Wall clock time and date at job start Mon Mar 30 2020 01:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47273 * 2 1 4 4 C 1.50700 * 109.46989 * 119.99484 * 2 1 3 5 5 H 1.08002 * 119.99774 * 120.00048 * 4 2 1 6 6 C 1.37875 * 120.00202 * 299.99648 * 4 2 1 7 7 N 1.31513 * 119.99859 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00146 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46981 * 60.00446 * 8 6 4 10 10 H 1.48496 * 109.47329 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47063 * 300.00756 * 8 6 4 12 12 C 1.50699 * 109.47538 * 239.99709 * 2 1 3 13 13 O 1.21287 * 119.99561 * 334.09518 * 12 2 1 14 14 N 1.34858 * 120.00489 * 154.09270 * 12 2 1 15 15 C 1.50183 * 125.88117 * 355.10511 * 14 12 2 16 16 C 1.50372 * 102.77790 * 165.22352 * 15 14 12 17 17 H 1.12916 * 107.03904 * 287.26717 * 16 15 14 18 18 C 1.49689 * 131.88696 * 153.66997 * 16 15 14 19 19 H 1.09671 * 115.26094 * 76.68356 * 18 16 15 20 20 C 1.53713 * 115.84448 * 300.37538 * 18 16 15 21 21 C 1.55127 * 105.33718 * 287.94437 * 20 18 16 22 22 C 1.57034 * 103.84870 * 9.56848 * 21 20 18 23 23 H 1.10078 * 117.73125 * 193.75592 * 22 21 20 24 24 C 1.59376 * 96.43239 * 197.19667 * 18 16 15 25 25 C 1.48172 * 107.72676 * 59.16614 * 22 21 20 26 26 C 1.50927 * 103.94807 * 32.72185 * 25 22 21 27 27 C 1.48241 * 140.06688 * 149.50312 * 25 22 21 28 28 H 1.08999 * 109.47164 * 295.93785 * 1 2 3 29 29 H 1.09000 * 109.47224 * 55.93545 * 1 2 3 30 30 H 1.08996 * 109.46805 * 175.93842 * 1 2 3 31 31 H 0.97004 * 119.99740 * 179.97438 * 7 6 4 32 32 H 1.11052 * 107.84464 * 49.89924 * 15 14 12 33 33 H 1.07683 * 114.12837 * 291.39157 * 15 14 12 34 34 H 1.08352 * 111.41116 * 49.38560 * 20 18 16 35 35 H 1.09560 * 109.49942 * 170.32797 * 20 18 16 36 36 H 1.12264 * 106.82576 * 255.95633 * 21 20 18 37 37 H 1.06968 * 115.38504 * 140.50865 * 21 20 18 38 38 H 1.08565 * 112.04478 * 176.47253 * 24 18 16 39 39 H 1.08556 * 112.08692 * 304.97887 * 24 18 16 40 40 H 1.08995 * 109.46870 * 291.74817 * 26 25 22 41 41 H 1.08998 * 109.46831 * 51.74993 * 26 25 22 42 42 H 1.09002 * 109.47101 * 171.74589 * 26 25 22 43 43 H 1.08371 * 110.08768 * 58.35458 * 27 25 22 44 44 H 1.08419 * 110.01252 * 293.92805 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6993 -0.2391 2.4828 7 7 0.9428 0.8299 2.6033 8 14 2.3213 -1.1200 4.0080 9 1 3.8063 -1.1206 4.0083 10 1 1.8260 -0.4202 5.2205 11 1 1.8258 -2.5199 4.0079 12 6 2.0324 -0.7104 -1.2304 13 8 1.3438 -1.5512 -1.7688 14 7 3.2476 -0.4114 -1.7328 15 6 4.1622 0.6724 -1.2384 16 6 5.4749 0.3187 -1.8808 17 1 5.8712 -0.5923 -1.3439 18 6 6.6563 1.1534 -2.2657 19 1 7.3068 1.4548 -1.4358 20 6 6.3811 2.2786 -3.2761 21 6 6.1454 1.5636 -4.6324 22 6 6.0570 0.0441 -4.2459 23 1 6.1222 -0.6957 -5.0584 24 6 7.3126 0.0891 -3.2539 25 6 4.9372 -0.1134 -3.2885 26 6 3.9394 0.9334 -3.7202 27 6 3.9240 -1.1152 -2.8792 28 1 -0.3633 0.4495 0.9241 29 1 -0.3634 0.5756 -0.8513 30 1 -0.3633 -1.0251 -0.0728 31 1 0.7082 1.1612 3.4843 32 1 4.2532 0.5646 -0.1369 33 1 3.8033 1.6704 -1.4252 34 1 5.5257 2.8747 -2.9810 35 1 7.2623 2.9251 -3.3526 36 1 7.0778 1.7060 -5.2412 37 1 5.3674 1.9765 -5.2394 38 1 8.1993 0.4801 -3.7434 39 1 7.4787 -0.8686 -2.7704 40 1 4.3441 1.9255 -3.5200 41 1 3.7428 0.8297 -4.7873 42 1 3.0107 0.8010 -3.1651 43 1 4.4122 -2.0238 -2.5466 44 1 3.2287 -1.2931 -3.6918 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597755258.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:38 Heat of formation + Delta-G solvation = 42.792503 kcal Electronic energy + Delta-G solvation = -23318.638477 eV Core-core repulsion = 20238.708852 eV Total energy + Delta-G solvation = -3079.929625 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.57520 -38.52889 -36.09329 -33.75726 -31.67786 -30.66412 -29.97041 -28.85330 -27.10617 -25.38876 -25.09782 -23.33717 -21.68604 -21.34510 -19.56926 -18.34107 -17.55313 -16.46830 -16.30445 -16.18136 -15.49704 -14.90401 -14.79299 -14.26346 -13.81576 -13.53165 -13.19730 -12.64596 -12.28387 -12.08077 -11.75172 -11.57750 -11.55013 -11.49242 -11.44243 -11.25482 -11.14634 -10.96261 -10.82669 -10.65988 -10.47397 -10.38032 -10.23389 -10.17357 -10.09396 -9.70904 -9.52188 -9.03351 -8.60298 -8.34304 -7.89991 -6.09079 -4.17080 3.28345 3.32997 3.35463 3.51752 3.78748 3.97371 4.21892 4.40579 4.56408 4.65381 4.95771 5.07443 5.13811 5.21613 5.23872 5.38062 5.43075 5.54733 5.60942 5.72003 5.76214 5.83432 5.85207 5.89436 5.93988 6.01893 6.10886 6.14594 6.17456 6.24435 6.34526 6.36749 6.46930 6.58056 6.67536 6.80568 6.89743 7.05302 7.17666 7.59208 7.77628 7.97884 8.21841 8.36584 8.82676 9.24866 9.48071 10.96671 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023617 B = 0.005495 C = 0.005002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.311095 B = 5094.176832 C = 5596.172046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.037 3.963 3 H 0.043 0.957 4 C -0.507 4.507 5 H 0.056 0.944 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.542 3.458 13 O -0.565 6.565 14 N -0.627 5.627 15 C 0.127 3.873 16 C -0.101 4.101 17 H 0.077 0.923 18 C -0.073 4.073 19 H 0.091 0.909 20 C -0.114 4.114 21 C -0.111 4.111 22 C -0.051 4.051 23 H 0.099 0.901 24 C -0.135 4.135 25 C -0.111 4.111 26 C -0.189 4.189 27 C 0.147 3.853 28 H 0.089 0.911 29 H 0.009 0.991 30 H 0.038 0.962 31 H 0.264 0.736 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.044 0.956 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.045 0.955 42 H 0.075 0.925 43 H 0.055 0.945 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.157 3.582 -11.613 17.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.016 3.984 3 H 0.061 0.939 4 C -0.545 4.545 5 H 0.074 0.926 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.335 3.665 13 O -0.444 6.444 14 N -0.365 5.365 15 C 0.006 3.994 16 C -0.120 4.120 17 H 0.095 0.905 18 C -0.092 4.092 19 H 0.109 0.891 20 C -0.151 4.151 21 C -0.149 4.149 22 C -0.070 4.070 23 H 0.117 0.883 24 C -0.173 4.173 25 C -0.112 4.112 26 C -0.246 4.246 27 C 0.026 3.974 28 H 0.107 0.893 29 H 0.028 0.972 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.093 0.907 43 H 0.073 0.927 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.588 3.246 -11.694 17.486 hybrid contribution 0.339 -0.409 0.832 0.987 sum 12.927 2.838 -10.863 17.122 Atomic orbital electron populations 1.21631 0.96233 0.99837 1.00704 1.18848 0.94508 0.96204 0.88849 0.93862 1.20694 1.31982 1.12570 0.89278 0.92577 1.24896 0.94828 0.94916 0.98906 1.69874 1.36011 1.22655 1.23812 0.86549 0.79135 0.79890 0.81844 1.20176 1.21112 1.20124 1.21773 0.77951 0.82109 0.84638 1.90538 1.56278 1.35586 1.61965 1.50473 1.18001 1.34433 1.33545 1.21230 0.87275 0.91136 0.99800 1.22112 0.94152 1.00010 0.95748 0.90452 1.22025 0.95706 0.94707 0.96767 0.89098 1.22189 1.01464 0.97079 0.94371 1.23013 1.01469 0.94114 0.96299 1.22296 0.92659 0.95876 0.96156 0.88290 1.24964 0.96876 0.98655 0.96772 1.20098 0.95324 0.99754 0.96001 1.23178 1.00696 0.99887 1.00812 1.20599 0.93139 0.93637 0.90043 0.89278 0.97228 0.94327 0.92650 0.90465 0.90856 0.91045 0.91972 0.93686 0.90908 0.91165 0.91289 0.91543 0.93626 0.90684 0.92699 0.90857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 8.65 37.16 0.32 -2.95 16 2 C 0.04 0.95 2.10 -92.92 -0.19 0.75 16 3 H 0.04 1.12 7.40 -51.93 -0.38 0.74 16 4 C -0.51 -13.90 8.55 -34.44 -0.29 -14.20 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 7 N -0.89 -24.57 11.30 55.43 0.63 -23.94 16 8 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 C 0.54 13.13 6.86 -10.95 -0.08 13.05 16 13 O -0.57 -15.19 16.39 5.55 0.09 -15.10 16 14 N -0.63 -12.28 2.02 -171.56 -0.35 -12.63 16 15 C 0.13 2.13 4.89 -3.29 -0.02 2.11 16 16 C -0.10 -1.35 2.49 -91.54 -0.23 -1.58 16 17 H 0.08 1.09 7.89 -49.63 -0.39 0.70 16 18 C -0.07 -0.77 4.72 -88.32 -0.42 -1.18 16 19 H 0.09 0.88 8.20 -51.55 -0.42 0.46 16 20 C -0.11 -1.08 5.63 -25.24 -0.14 -1.23 16 21 C -0.11 -1.03 4.82 -23.42 -0.11 -1.14 16 22 C -0.05 -0.52 4.92 -86.78 -0.43 -0.95 16 23 H 0.10 0.91 8.23 -51.32 -0.42 0.49 16 24 C -0.14 -1.28 6.47 -19.17 -0.12 -1.41 16 25 C -0.11 -1.43 2.19 -158.18 -0.35 -1.78 16 26 C -0.19 -2.57 5.17 36.12 0.19 -2.39 16 27 C 0.15 2.42 5.78 -4.08 -0.02 2.40 16 28 H 0.09 2.42 5.97 -51.93 -0.31 2.11 16 29 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.04 1.02 7.72 -51.93 -0.40 0.62 16 31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.08 1.45 8.14 -50.75 -0.41 1.04 16 33 H 0.07 1.18 7.17 -52.66 -0.38 0.80 16 34 H 0.07 0.73 6.50 -52.29 -0.34 0.39 16 35 H 0.06 0.51 8.19 -51.61 -0.42 0.09 16 36 H 0.04 0.36 8.19 -50.03 -0.41 -0.05 16 37 H 0.07 0.68 6.74 -53.05 -0.36 0.32 16 38 H 0.07 0.58 7.78 -52.17 -0.41 0.17 16 39 H 0.07 0.68 7.71 -52.18 -0.40 0.28 16 40 H 0.07 0.83 3.63 -51.93 -0.19 0.64 16 41 H 0.04 0.58 7.39 -51.93 -0.38 0.20 16 42 H 0.07 1.27 5.09 -51.93 -0.26 1.01 16 43 H 0.05 0.89 8.09 -52.28 -0.42 0.47 16 44 H 0.07 1.24 7.69 -52.25 -0.40 0.84 16 LS Contribution 320.99 15.07 4.84 4.84 Total: -1.00 -30.03 320.99 -8.88 -38.91 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -7.09 Total: 0.68 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -1.99 Total: -8.77 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.28 Total: -36.57 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: 0.09 Total: -15.10 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.03 -8.88 -38.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597755258.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.705 kcal (2) G-P(sol) polarization free energy of solvation -30.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds