Wall clock time and date at job start Mon Mar 30 2020 01:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47273 * 2 1 4 4 C 1.50700 * 109.46989 * 119.99484 * 2 1 3 5 5 H 1.08002 * 119.99774 * 120.00048 * 4 2 1 6 6 C 1.37875 * 120.00202 * 299.99648 * 4 2 1 7 7 N 1.31513 * 119.99859 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00146 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46981 * 60.00446 * 8 6 4 10 10 H 1.48496 * 109.47329 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47063 * 300.00756 * 8 6 4 12 12 C 1.50699 * 109.47538 * 239.99709 * 2 1 3 13 13 O 1.21287 * 119.99561 * 334.09518 * 12 2 1 14 14 N 1.34858 * 120.00489 * 154.09270 * 12 2 1 15 15 C 1.50183 * 125.88117 * 355.10511 * 14 12 2 16 16 C 1.50372 * 102.77790 * 165.22352 * 15 14 12 17 17 H 1.12916 * 107.03904 * 287.26717 * 16 15 14 18 18 C 1.49689 * 131.88696 * 153.66997 * 16 15 14 19 19 H 1.09671 * 115.26094 * 76.68356 * 18 16 15 20 20 C 1.53713 * 115.84448 * 300.37538 * 18 16 15 21 21 C 1.55127 * 105.33718 * 287.94437 * 20 18 16 22 22 C 1.57034 * 103.84870 * 9.56848 * 21 20 18 23 23 H 1.10078 * 117.73125 * 193.75592 * 22 21 20 24 24 C 1.59376 * 96.43239 * 197.19667 * 18 16 15 25 25 C 1.48172 * 107.72676 * 59.16614 * 22 21 20 26 26 C 1.50927 * 103.94807 * 32.72185 * 25 22 21 27 27 C 1.48241 * 140.06688 * 149.50312 * 25 22 21 28 28 H 1.08999 * 109.47164 * 295.93785 * 1 2 3 29 29 H 1.09000 * 109.47224 * 55.93545 * 1 2 3 30 30 H 1.08996 * 109.46805 * 175.93842 * 1 2 3 31 31 H 0.97004 * 119.99740 * 179.97438 * 7 6 4 32 32 H 1.11052 * 107.84464 * 49.89924 * 15 14 12 33 33 H 1.07683 * 114.12837 * 291.39157 * 15 14 12 34 34 H 1.08352 * 111.41116 * 49.38560 * 20 18 16 35 35 H 1.09560 * 109.49942 * 170.32797 * 20 18 16 36 36 H 1.12264 * 106.82576 * 255.95633 * 21 20 18 37 37 H 1.06968 * 115.38504 * 140.50865 * 21 20 18 38 38 H 1.08565 * 112.04478 * 176.47253 * 24 18 16 39 39 H 1.08556 * 112.08692 * 304.97887 * 24 18 16 40 40 H 1.08995 * 109.46870 * 291.74817 * 26 25 22 41 41 H 1.08998 * 109.46831 * 51.74993 * 26 25 22 42 42 H 1.09002 * 109.47101 * 171.74589 * 26 25 22 43 43 H 1.08371 * 110.08768 * 58.35458 * 27 25 22 44 44 H 1.08419 * 110.01252 * 293.92805 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6993 -0.2391 2.4828 7 7 0.9428 0.8299 2.6033 8 14 2.3213 -1.1200 4.0080 9 1 3.8063 -1.1206 4.0083 10 1 1.8260 -0.4202 5.2205 11 1 1.8258 -2.5199 4.0079 12 6 2.0324 -0.7104 -1.2304 13 8 1.3438 -1.5512 -1.7688 14 7 3.2476 -0.4114 -1.7328 15 6 4.1622 0.6724 -1.2384 16 6 5.4749 0.3187 -1.8808 17 1 5.8712 -0.5923 -1.3439 18 6 6.6563 1.1534 -2.2657 19 1 7.3068 1.4548 -1.4358 20 6 6.3811 2.2786 -3.2761 21 6 6.1454 1.5636 -4.6324 22 6 6.0570 0.0441 -4.2459 23 1 6.1222 -0.6957 -5.0584 24 6 7.3126 0.0891 -3.2539 25 6 4.9372 -0.1134 -3.2885 26 6 3.9394 0.9334 -3.7202 27 6 3.9240 -1.1152 -2.8792 28 1 -0.3633 0.4495 0.9241 29 1 -0.3634 0.5756 -0.8513 30 1 -0.3633 -1.0251 -0.0728 31 1 0.7082 1.1612 3.4843 32 1 4.2532 0.5646 -0.1369 33 1 3.8033 1.6704 -1.4252 34 1 5.5257 2.8747 -2.9810 35 1 7.2623 2.9251 -3.3526 36 1 7.0778 1.7060 -5.2412 37 1 5.3674 1.9765 -5.2394 38 1 8.1993 0.4801 -3.7434 39 1 7.4787 -0.8686 -2.7704 40 1 4.3441 1.9255 -3.5200 41 1 3.7428 0.8297 -4.7873 42 1 3.0107 0.8010 -3.1651 43 1 4.4122 -2.0238 -2.5466 44 1 3.2287 -1.2931 -3.6918 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597755258.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:38 Heat of formation + Delta-G solvation = 27.253167 kcal Electronic energy + Delta-G solvation = -23319.312313 eV Core-core repulsion = 20238.708852 eV Total energy + Delta-G solvation = -3080.603461 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.66491 -40.25586 -37.46908 -35.85046 -33.03265 -32.27035 -31.48326 -29.85302 -28.26664 -27.31755 -26.53579 -24.68234 -23.34994 -22.26713 -20.54397 -20.05507 -18.84309 -18.29093 -17.88660 -17.44991 -16.82968 -16.60476 -15.95069 -15.80492 -15.19199 -14.93169 -14.91552 -14.19986 -13.86169 -13.53392 -13.19524 -13.05579 -12.92160 -12.84347 -12.60929 -12.56695 -12.48977 -12.33034 -12.23814 -12.18079 -12.11962 -11.99906 -11.66944 -11.42585 -11.16814 -10.99905 -10.75081 -10.65222 -10.53859 -10.35784 -9.54152 -8.19338 -6.35350 1.39819 1.42763 1.49904 1.84580 1.99438 2.42205 2.91023 3.08886 3.27703 3.67273 3.81985 3.98212 4.05488 4.11646 4.17147 4.33599 4.43627 4.49038 4.54695 4.63811 4.68827 4.70556 4.73567 4.77932 4.86976 4.93128 4.97679 5.01512 5.05471 5.08845 5.13338 5.18076 5.26876 5.30854 5.36411 5.43246 5.46624 5.49438 5.56810 5.60803 5.65497 5.81861 6.11663 6.56983 6.66824 7.29431 7.39119 8.86081 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023617 B = 0.005495 C = 0.005002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.311095 B = 5094.176832 C = 5596.172046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.036 3.964 3 H 0.035 0.965 4 C -0.527 4.527 5 H 0.043 0.957 6 C 0.027 3.973 7 N -0.906 5.906 8 Si 0.961 3.039 9 H -0.266 1.266 10 H -0.275 1.275 11 H -0.278 1.278 12 C 0.537 3.463 13 O -0.602 6.602 14 N -0.624 5.624 15 C 0.130 3.870 16 C -0.096 4.096 17 H 0.068 0.932 18 C -0.075 4.075 19 H 0.102 0.898 20 C -0.115 4.115 21 C -0.113 4.113 22 C -0.052 4.052 23 H 0.116 0.884 24 C -0.124 4.124 25 C -0.094 4.094 26 C -0.183 4.183 27 C 0.142 3.858 28 H 0.075 0.925 29 H 0.022 0.978 30 H 0.022 0.978 31 H 0.268 0.732 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.060 0.940 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.056 0.944 42 H 0.035 0.965 43 H 0.056 0.944 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.030 4.243 -12.531 20.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.015 3.985 3 H 0.053 0.947 4 C -0.565 4.565 5 H 0.061 0.939 6 C -0.174 4.174 7 N -0.544 5.544 8 Si 0.785 3.215 9 H -0.191 1.191 10 H -0.200 1.200 11 H -0.204 1.204 12 C 0.329 3.671 13 O -0.485 6.485 14 N -0.359 5.359 15 C 0.009 3.991 16 C -0.115 4.115 17 H 0.086 0.914 18 C -0.094 4.094 19 H 0.120 0.880 20 C -0.152 4.152 21 C -0.150 4.150 22 C -0.071 4.071 23 H 0.134 0.866 24 C -0.161 4.161 25 C -0.095 4.095 26 C -0.240 4.240 27 C 0.021 3.979 28 H 0.094 0.906 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.113 0.887 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.075 0.925 42 H 0.054 0.946 43 H 0.074 0.926 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 15.509 3.935 -12.628 20.383 hybrid contribution -0.570 -0.575 1.099 1.365 sum 14.939 3.360 -11.528 19.167 Atomic orbital electron populations 1.21489 0.96702 0.98780 1.00466 1.18750 0.94272 0.95808 0.89657 0.94684 1.20795 1.32607 1.12579 0.90492 0.93913 1.25624 0.94749 0.95512 1.01494 1.69962 1.36299 1.23440 1.24730 0.85574 0.79067 0.78445 0.78385 1.19100 1.19974 1.20403 1.21382 0.79402 0.81838 0.84432 1.90498 1.57814 1.37162 1.62989 1.50432 1.16980 1.34673 1.33792 1.21344 0.88841 0.90538 0.98403 1.22100 0.93427 1.00575 0.95353 0.91408 1.22098 0.94107 0.95463 0.97734 0.87967 1.22217 1.02046 0.96821 0.94081 1.22995 1.02850 0.92809 0.96351 1.22426 0.91257 0.97279 0.96132 0.86602 1.24925 0.97191 0.98087 0.95907 1.20117 0.95542 0.97162 0.96656 1.23108 0.99039 1.01018 1.00867 1.20728 0.93909 0.94537 0.88715 0.90628 0.95927 0.95885 0.92254 0.93176 0.90414 0.92179 0.89742 0.91212 0.90927 0.88703 0.91706 0.90065 0.92499 0.94619 0.92582 0.91612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.28 8.65 71.98 0.62 -5.65 16 2 C 0.04 1.95 2.10 -12.29 -0.03 1.92 16 3 H 0.04 1.91 7.40 -2.39 -0.02 1.89 16 4 C -0.53 -29.83 8.55 25.60 0.22 -29.61 16 5 H 0.04 2.48 7.74 -2.91 -0.02 2.45 16 6 C 0.03 1.47 5.30 84.65 0.45 1.91 16 7 N -0.91 -50.95 11.30 21.45 0.24 -50.71 16 8 Si 0.96 43.30 29.54 68.60 2.03 45.33 16 9 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 10 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 12 C 0.54 27.23 6.86 87.64 0.60 27.83 16 13 O -0.60 -33.84 16.39 -3.05 -0.05 -33.89 16 14 N -0.62 -25.37 2.02 -815.03 -1.64 -27.02 16 15 C 0.13 4.44 4.89 84.81 0.41 4.86 16 16 C -0.10 -2.45 2.49 -11.39 -0.03 -2.47 16 17 H 0.07 1.87 7.89 -0.23 0.00 1.87 16 18 C -0.08 -1.35 4.72 -9.31 -0.04 -1.40 16 19 H 0.10 1.66 8.20 -2.03 -0.02 1.64 16 20 C -0.11 -1.76 5.63 31.56 0.18 -1.59 16 21 C -0.11 -1.61 4.82 32.74 0.16 -1.45 16 22 C -0.05 -0.88 4.92 -8.31 -0.04 -0.92 16 23 H 0.12 1.65 8.23 -1.81 -0.01 1.64 16 24 C -0.12 -1.85 6.47 35.49 0.23 -1.62 16 25 C -0.09 -2.29 2.19 -54.56 -0.12 -2.41 16 26 C -0.18 -4.82 5.17 71.31 0.37 -4.45 16 27 C 0.14 4.70 5.78 84.08 0.49 5.18 16 28 H 0.08 4.25 5.97 -2.39 -0.01 4.24 16 29 H 0.02 1.09 8.14 -2.39 -0.02 1.08 16 30 H 0.02 1.25 7.72 -2.39 -0.02 1.23 16 31 H 0.27 14.20 8.31 -92.70 -0.77 13.43 16 32 H 0.05 1.97 8.14 -1.28 -0.01 1.96 16 33 H 0.08 2.57 7.17 -3.07 -0.02 2.55 16 34 H 0.06 1.07 6.50 -2.73 -0.02 1.06 16 35 H 0.08 0.99 8.19 -2.09 -0.02 0.97 16 36 H 0.07 0.74 8.19 -0.60 0.00 0.73 16 37 H 0.07 1.08 6.74 -3.44 -0.02 1.05 16 38 H 0.09 1.04 7.78 -2.62 -0.02 1.02 16 39 H 0.06 1.06 7.71 -2.62 -0.02 1.04 16 40 H 0.08 1.90 3.63 -2.39 -0.01 1.89 16 41 H 0.06 1.36 7.39 -2.39 -0.02 1.34 16 42 H 0.04 1.22 5.09 -2.39 -0.01 1.21 16 43 H 0.06 1.84 8.09 -2.72 -0.02 1.82 16 44 H 0.07 2.28 7.69 -2.69 -0.02 2.26 16 Total: -1.00 -66.72 320.99 5.05 -61.68 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 1.01 Total: 14.49 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: 3.47 Total: -9.88 kcal Atomic # 7 Polarization: -76.32 SS G_CDS: -1.40 Total: -77.73 kcal Atomic # 8 Polarization: -33.84 SS G_CDS: -0.05 Total: -33.89 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -66.72 5.05 -61.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597755258.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.929 kcal (2) G-P(sol) polarization free energy of solvation -66.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds