Wall clock time and date at job start Mon Mar 30 2020 01:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09010 * 109.47210 * 2 1 4 4 C 1.50702 * 109.46974 * 119.99523 * 2 1 3 5 5 H 1.07997 * 119.99855 * 120.00561 * 4 2 1 6 6 C 1.37882 * 120.00151 * 300.00144 * 4 2 1 7 7 N 1.31513 * 119.99626 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 119.99995 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47298 * 90.00341 * 8 6 4 10 10 H 1.48508 * 109.46987 * 210.00181 * 8 6 4 11 11 H 1.48501 * 109.47312 * 330.00043 * 8 6 4 12 12 C 1.50696 * 109.47667 * 239.99780 * 2 1 3 13 13 O 1.21283 * 120.00099 * 273.43361 * 12 2 1 14 14 N 1.34780 * 120.00192 * 93.43252 * 12 2 1 15 15 C 1.48190 * 127.90121 * 184.67715 * 14 12 2 16 16 C 1.54263 * 104.84698 * 219.82914 * 15 14 12 17 17 H 1.09000 * 113.29388 * 99.50556 * 16 15 14 18 18 C 1.55828 * 108.02619 * 225.17309 * 16 15 14 19 19 H 1.09004 * 115.86305 * 311.05905 * 18 16 15 20 20 C 1.55916 * 104.56045 * 181.43674 * 18 16 15 21 21 C 1.54576 * 104.63446 * 289.55181 * 20 18 16 22 22 C 1.55922 * 104.64134 * 359.97438 * 21 20 18 23 23 H 1.08997 * 116.46996 * 199.73260 * 22 21 20 24 24 C 1.56909 * 100.69182 * 326.26581 * 22 21 20 25 25 C 1.55560 * 104.71029 * 336.08676 * 16 15 14 26 26 C 1.53001 * 113.45268 * 123.31648 * 25 16 15 27 27 C 1.48089 * 127.84507 * 4.78689 * 14 12 2 28 28 H 1.08998 * 109.47296 * 185.08506 * 1 2 3 29 29 H 1.08996 * 109.47786 * 305.08874 * 1 2 3 30 30 H 1.09009 * 109.46792 * 65.09351 * 1 2 3 31 31 H 0.97001 * 120.00250 * 179.97438 * 7 6 4 32 32 H 1.09000 * 110.27604 * 101.01396 * 15 14 12 33 33 H 1.09002 * 110.49903 * 338.75997 * 15 14 12 34 34 H 1.09004 * 110.40696 * 48.33887 * 20 18 16 35 35 H 1.09000 * 110.40488 * 170.64806 * 20 18 16 36 36 H 1.09002 * 110.40897 * 241.19426 * 21 20 18 37 37 H 1.09002 * 110.40609 * 118.77384 * 21 20 18 38 38 H 1.09001 * 112.02398 * 170.24467 * 24 22 21 39 39 H 1.09002 * 112.02503 * 296.75623 * 24 22 21 40 40 H 1.09004 * 109.47084 * 294.04287 * 26 25 16 41 41 H 1.08999 * 109.47391 * 54.04916 * 26 25 16 42 42 H 1.09004 * 109.46687 * 174.04929 * 26 25 16 43 43 H 1.08992 * 110.37944 * 21.26853 * 27 14 12 44 44 H 1.09002 * 110.37768 * 259.01924 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2305 5 1 2.6532 -1.5883 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9426 0.8298 2.6033 8 14 2.3211 -1.1201 4.0080 9 1 3.6294 -0.5456 4.4125 10 1 1.3428 -0.9489 5.1121 11 1 2.4856 -2.5660 3.7122 12 6 2.0324 -0.7104 -1.2304 13 8 2.1753 -1.9147 -1.2194 14 7 2.3230 -0.0075 -2.3430 15 6 2.7331 -0.5290 -3.6681 16 6 3.8248 0.4457 -4.1559 17 1 4.8370 0.0732 -3.9982 18 6 3.5339 0.7880 -5.6480 19 1 3.3432 -0.0626 -6.3025 20 6 4.6964 1.7393 -6.0658 21 6 4.4159 3.0558 -5.3058 22 6 3.1100 2.7758 -4.5011 23 1 2.5521 3.6484 -4.1615 24 6 2.3591 1.8162 -5.4896 25 6 3.5418 1.7705 -3.3912 26 6 4.7351 2.2683 -2.5732 27 6 2.3071 1.4629 -2.5188 28 1 -0.3634 -1.0236 0.0911 29 1 -0.3634 0.5907 0.8408 30 1 -0.3633 0.4328 -0.9322 31 1 0.7079 1.1611 3.4843 32 1 1.8863 -0.5247 -4.3543 33 1 3.1386 -1.5363 -3.5730 34 1 5.6566 1.3224 -5.7620 35 1 4.6802 1.9092 -7.1423 36 1 4.2608 3.8747 -6.0083 37 1 5.2380 3.2860 -4.6281 38 1 1.4794 1.3642 -5.0314 39 1 2.1163 2.3081 -6.4316 40 1 4.9410 1.5651 -1.7661 41 1 5.6102 2.3474 -3.2182 42 1 4.5042 3.2469 -2.1523 43 1 2.3908 1.9615 -1.5533 44 1 1.3953 1.7744 -3.0284 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597755259.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:40 Heat of formation + Delta-G solvation = -52.633714 kcal Electronic energy + Delta-G solvation = -23035.247139 eV Core-core repulsion = 19951.179522 eV Total energy + Delta-G solvation = -3084.067616 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.43592 -40.11996 -36.71384 -35.81310 -32.98314 -32.76489 -31.21616 -29.58785 -27.64782 -27.32154 -26.97610 -25.04984 -23.36428 -21.57304 -20.73299 -20.06499 -19.03519 -18.32906 -17.83594 -17.20508 -16.78978 -16.25610 -15.84665 -15.62912 -15.41923 -14.64201 -14.48349 -14.24762 -13.95470 -13.70470 -13.45232 -13.10412 -13.07698 -12.91289 -12.68758 -12.66716 -12.60502 -12.28989 -12.15448 -12.09777 -12.04519 -11.90112 -11.76146 -11.46843 -11.30199 -11.14474 -11.07977 -10.72465 -10.63187 -10.30794 -9.57995 -8.19288 -6.30475 1.37848 1.39134 1.50911 1.86256 2.14748 2.43625 3.09906 3.40702 3.43279 3.60642 3.87585 3.98972 4.15961 4.21223 4.27156 4.29711 4.36104 4.52620 4.56706 4.63790 4.66750 4.72362 4.73236 4.77754 4.87187 4.90081 4.97526 5.01370 5.04420 5.09710 5.13831 5.25172 5.26195 5.30559 5.32624 5.41087 5.42534 5.50225 5.58111 5.63751 5.66157 5.86650 6.14847 6.66533 6.76171 7.33837 7.44825 8.87099 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029988 B = 0.004749 C = 0.004619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.468186 B = 5894.170148 C = 6061.047563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.035 3.965 3 H 0.039 0.961 4 C -0.531 4.531 5 H 0.039 0.961 6 C 0.024 3.976 7 N -0.908 5.908 8 Si 0.957 3.043 9 H -0.270 1.270 10 H -0.271 1.271 11 H -0.281 1.281 12 C 0.539 3.461 13 O -0.597 6.597 14 N -0.631 5.631 15 C 0.101 3.899 16 C -0.088 4.088 17 H 0.081 0.919 18 C -0.091 4.091 19 H 0.108 0.892 20 C -0.115 4.115 21 C -0.121 4.121 22 C -0.086 4.086 23 H 0.109 0.891 24 C -0.126 4.126 25 C -0.067 4.067 26 C -0.130 4.130 27 C 0.105 3.895 28 H 0.019 0.981 29 H 0.076 0.924 30 H 0.038 0.962 31 H 0.267 0.733 32 H 0.082 0.918 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.089 0.911 40 H 0.028 0.972 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.515 8.881 -18.898 21.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.014 3.986 3 H 0.057 0.943 4 C -0.569 4.569 5 H 0.057 0.943 6 C -0.176 4.176 7 N -0.547 5.547 8 Si 0.782 3.218 9 H -0.195 1.195 10 H -0.196 1.196 11 H -0.206 1.206 12 C 0.331 3.669 13 O -0.478 6.478 14 N -0.364 5.364 15 C -0.021 4.021 16 C -0.107 4.107 17 H 0.099 0.901 18 C -0.109 4.109 19 H 0.126 0.874 20 C -0.152 4.152 21 C -0.158 4.158 22 C -0.104 4.104 23 H 0.127 0.873 24 C -0.163 4.163 25 C -0.068 4.068 26 C -0.187 4.187 27 C -0.017 4.017 28 H 0.038 0.962 29 H 0.094 0.906 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.107 0.893 40 H 0.047 0.953 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.476 8.304 -18.645 21.132 hybrid contribution 0.153 -0.875 1.334 1.603 sum 5.629 7.429 -17.311 19.660 Atomic orbital electron populations 1.21464 0.95401 0.99614 1.00533 1.18747 0.94817 0.95879 0.89163 0.94338 1.21130 1.32212 1.12320 0.91227 0.94301 1.25586 0.94996 0.95686 1.01336 1.69947 1.36761 1.23438 1.24515 0.85574 0.78634 0.78631 0.78946 1.19499 1.19629 1.20625 1.21375 0.74844 0.86816 0.83880 1.90495 1.55928 1.17102 1.84269 1.49211 1.67989 1.08790 1.10422 1.22530 0.97971 0.98041 0.83607 1.23198 0.97464 0.93745 0.96332 0.90085 1.23603 0.96184 0.97872 0.93253 0.87371 1.22545 0.97383 0.94913 1.00397 1.22674 0.96844 0.97622 0.98673 1.23607 0.96775 0.96663 0.93360 0.87270 1.23670 0.96729 0.96383 0.99549 1.22500 0.93990 0.95518 0.94795 1.21694 0.97387 1.00728 0.98885 1.22709 0.99192 0.79460 1.00349 0.96223 0.90573 0.94322 0.92371 0.89973 0.92982 0.92094 0.90468 0.90548 0.91127 0.92094 0.89294 0.95317 0.90215 0.91409 0.91666 0.89734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.65 8.87 71.98 0.64 -5.01 16 2 C 0.04 1.88 2.37 -12.29 -0.03 1.85 16 3 H 0.04 2.08 6.35 -2.38 -0.02 2.06 16 4 C -0.53 -31.90 8.32 25.60 0.21 -31.69 16 5 H 0.04 2.49 7.22 -2.91 -0.02 2.47 16 6 C 0.02 1.35 5.30 84.66 0.45 1.80 16 7 N -0.91 -51.70 11.37 21.45 0.24 -51.45 16 8 Si 0.96 45.57 29.54 68.60 2.03 47.59 16 9 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 12 C 0.54 27.26 6.92 87.66 0.61 27.87 16 13 O -0.60 -34.66 16.32 -3.04 -0.05 -34.71 16 14 N -0.63 -24.55 3.32 -808.46 -2.68 -27.23 16 15 C 0.10 3.13 6.23 86.48 0.54 3.67 16 16 C -0.09 -2.08 3.11 -8.51 -0.03 -2.10 16 17 H 0.08 2.00 7.88 -2.39 -0.02 1.98 16 18 C -0.09 -1.50 4.34 -7.43 -0.03 -1.53 16 19 H 0.11 1.60 8.14 -2.38 -0.02 1.58 16 20 C -0.11 -1.57 6.21 32.14 0.20 -1.37 16 21 C -0.12 -1.65 6.02 32.14 0.19 -1.45 16 22 C -0.09 -1.43 4.09 -7.43 -0.03 -1.46 16 23 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 24 C -0.13 -2.01 6.03 33.34 0.20 -1.81 16 25 C -0.07 -1.57 0.77 -49.88 -0.04 -1.60 16 26 C -0.13 -3.07 8.18 71.98 0.59 -2.49 16 27 C 0.11 3.22 5.70 86.51 0.49 3.71 16 28 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.08 4.05 6.22 -2.39 -0.01 4.04 16 30 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 32 H 0.08 2.24 6.69 -2.39 -0.02 2.23 16 33 H 0.05 1.84 7.85 -2.39 -0.02 1.82 16 34 H 0.06 0.88 7.96 -2.38 -0.02 0.86 16 35 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.08 0.84 8.14 -2.39 -0.02 0.83 16 37 H 0.07 1.00 5.68 -2.39 -0.01 0.99 16 38 H 0.06 1.14 5.80 -2.39 -0.01 1.13 16 39 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.08 1.54 6.33 -2.39 -0.02 1.52 16 42 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 43 H 0.06 2.25 6.24 -2.39 -0.01 2.24 16 44 H 0.08 2.27 6.69 -2.39 -0.02 2.25 16 Total: -1.00 -70.03 326.85 4.48 -65.55 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 0.98 Total: 11.87 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: 3.97 Total: -11.62 kcal Atomic # 7 Polarization: -76.24 SS G_CDS: -2.44 Total: -78.68 kcal Atomic # 8 Polarization: -34.66 SS G_CDS: -0.05 Total: -34.71 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.59 kcal Total: -70.03 4.48 -65.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597755259.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.918 kcal (2) G-P(sol) polarization free energy of solvation -70.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds