Wall clock time and date at job start Mon Mar 30 2020 01:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46946 * 2 1 4 4 C 1.53003 * 109.46896 * 240.00291 * 2 1 3 5 5 C 1.50699 * 109.47208 * 64.99744 * 4 2 1 6 6 H 1.08000 * 119.99915 * 0.02562 * 5 4 2 7 7 C 1.37871 * 119.99858 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00076 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99858 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46956 * 60.00200 * 9 7 5 11 11 H 1.48497 * 109.46839 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47106 * 300.00443 * 9 7 5 13 13 C 1.52998 * 109.47262 * 120.00010 * 2 1 3 14 14 N 1.46898 * 109.47213 * 296.89384 * 13 2 1 15 15 C 1.46898 * 110.99782 * 298.93893 * 14 13 2 16 16 C 1.53007 * 109.47038 * 290.81980 * 15 14 13 17 17 O 1.42898 * 109.46970 * 67.68937 * 16 15 14 18 18 C 1.46905 * 110.99922 * 174.99008 * 14 13 2 19 19 C 1.50703 * 109.46701 * 189.99834 * 18 14 13 20 20 C 1.38233 * 119.99955 * 89.99872 * 19 18 14 21 21 C 1.38240 * 119.99989 * 179.97438 * 20 19 18 22 22 C 1.38237 * 119.99583 * 0.07650 * 21 20 19 23 23 C 1.38230 * 120.00211 * 359.89927 * 22 21 20 24 24 C 1.38228 * 119.99758 * 269.97138 * 19 18 14 25 25 H 1.09002 * 109.46878 * 299.99485 * 1 2 3 26 26 H 1.09002 * 109.47326 * 59.99980 * 1 2 3 27 27 H 1.09002 * 109.46946 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46751 * 184.99654 * 4 2 1 29 29 H 1.09002 * 109.46793 * 304.99533 * 4 2 1 30 30 H 0.97004 * 120.00080 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47196 * 176.88473 * 13 2 1 32 32 H 1.09009 * 109.46591 * 56.88876 * 13 2 1 33 33 H 1.08995 * 109.47169 * 50.81712 * 15 14 13 34 34 H 1.08999 * 109.47402 * 170.82369 * 15 14 13 35 35 H 1.09003 * 109.47012 * 187.68978 * 16 15 14 36 36 H 1.08995 * 109.47124 * 307.68693 * 16 15 14 37 37 H 0.96703 * 113.99926 * 180.02562 * 17 16 15 38 38 H 1.08991 * 109.47531 * 69.99617 * 18 14 13 39 39 H 1.09005 * 109.46351 * 309.99114 * 18 14 13 40 40 H 1.08000 * 120.00162 * 359.69801 * 20 19 18 41 41 H 1.07992 * 120.00149 * 179.97438 * 21 20 19 42 42 H 1.07996 * 119.99683 * 179.97438 * 22 21 20 43 43 H 1.08002 * 120.00232 * 180.02562 * 23 22 21 44 44 H 1.08001 * 120.00014 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4766 6 1 1.0806 0.9746 -2.3756 7 6 1.9931 -0.4016 -3.7283 8 7 2.6763 -1.5186 -3.8512 9 14 1.4982 0.5628 -5.2496 10 1 2.0893 1.9237 -5.1870 11 1 1.9943 -0.1365 -6.4621 12 1 0.0182 0.6683 -5.3091 13 6 2.0400 -0.7212 1.2492 14 7 1.6126 0.0132 2.4475 15 6 2.1658 1.3740 2.4560 16 6 3.6789 1.3082 2.6733 17 8 4.2987 0.7143 1.5309 18 6 1.9824 -0.7130 3.6698 19 6 1.3211 -0.0646 4.8587 20 6 0.0681 -0.4829 5.2660 21 6 -0.5383 0.1115 6.3568 22 6 0.1077 1.1253 7.0393 23 6 1.3608 1.5432 6.6323 24 6 1.9677 0.9481 5.5421 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1263 -0.7994 -1.2057 29 1 1.6054 -1.7198 -1.2952 30 1 2.9235 -1.8415 -4.7318 31 1 3.1286 -0.7699 1.2217 32 1 1.6318 -1.7316 1.2775 33 1 1.9564 1.8573 1.5017 34 1 1.7077 1.9474 3.2619 35 1 4.0696 2.3157 2.8160 36 1 3.8933 0.7069 3.5567 37 1 5.2604 0.6399 1.5993 38 1 3.0646 -0.6848 3.7959 39 1 1.6525 -1.7489 3.5907 40 1 -0.4390 -1.2711 4.7292 41 1 -1.5174 -0.2151 6.6748 42 1 -0.3662 1.5899 7.8913 43 1 1.8657 2.3350 7.1658 44 1 2.9470 1.2743 5.2244 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602429266.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:19 Heat of formation + Delta-G solvation = -26.359339 kcal Electronic energy + Delta-G solvation = -22023.111112 eV Core-core repulsion = 18940.182838 eV Total energy + Delta-G solvation = -3082.928274 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.78174 -38.19560 -35.80037 -34.39972 -32.20563 -31.20154 -30.91275 -28.90821 -26.88993 -25.99531 -24.46914 -22.90170 -22.60971 -21.78055 -20.08894 -18.46482 -17.49167 -16.77279 -16.31304 -16.17860 -15.26361 -15.22599 -14.80483 -14.32011 -14.16776 -13.48160 -13.40123 -13.23766 -12.94677 -12.61660 -12.43909 -12.15273 -11.92647 -11.72250 -11.31905 -11.26995 -11.14182 -11.03482 -10.81796 -10.75883 -10.66377 -10.20975 -10.07234 -9.79687 -9.31544 -9.02022 -8.97026 -8.85527 -8.71482 -8.21476 -7.76109 -5.87327 -3.87240 1.28429 1.34654 3.40384 3.44123 3.47120 3.67846 4.30419 4.50749 4.57952 4.75176 4.80266 4.92718 5.00423 5.17775 5.21414 5.37074 5.42187 5.47474 5.48390 5.60940 5.63716 5.78283 5.96436 5.98162 6.02324 6.19905 6.28221 6.39352 6.43705 6.44955 6.56827 6.61954 6.82281 6.87325 6.94145 7.17836 7.25791 7.38801 7.52194 7.60391 7.78031 7.85103 8.04755 8.15447 8.60135 9.19249 9.74990 11.24319 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029953 B = 0.003754 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.575678 B = 7457.556092 C = 7816.683248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.074 4.074 3 H 0.057 0.943 4 C 0.031 3.969 5 C -0.507 4.507 6 H 0.053 0.947 7 C 0.054 3.946 8 N -0.899 5.899 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.051 3.949 14 N -0.521 5.521 15 C 0.047 3.953 16 C 0.033 3.967 17 O -0.548 6.548 18 C 0.082 3.918 19 C -0.067 4.067 20 C -0.099 4.099 21 C -0.121 4.121 22 C -0.127 4.127 23 C -0.123 4.123 24 C -0.119 4.119 25 H 0.039 0.961 26 H 0.050 0.950 27 H 0.037 0.963 28 H 0.015 0.985 29 H 0.011 0.989 30 H 0.258 0.742 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.041 0.959 36 H 0.045 0.955 37 H 0.367 0.633 38 H 0.044 0.956 39 H 0.080 0.920 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.385 4.415 21.857 22.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.093 4.093 3 H 0.075 0.925 4 C -0.006 4.006 5 C -0.546 4.546 6 H 0.072 0.928 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.716 3.284 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.203 1.203 13 C -0.075 4.075 14 N -0.244 5.244 15 C -0.081 4.081 16 C -0.046 4.046 17 O -0.352 6.352 18 C -0.045 4.045 19 C -0.067 4.067 20 C -0.118 4.118 21 C -0.140 4.140 22 C -0.145 4.145 23 C -0.141 4.141 24 C -0.138 4.138 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.033 0.967 29 H 0.030 0.970 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.111 0.889 34 H 0.100 0.900 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.214 0.786 38 H 0.062 0.938 39 H 0.098 0.902 40 H 0.141 0.859 41 H 0.137 0.863 42 H 0.135 0.865 43 H 0.136 0.864 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.453 4.288 21.482 21.954 hybrid contribution 1.221 0.516 -0.629 1.468 sum -0.232 4.804 20.853 21.400 Atomic orbital electron populations 1.21628 0.96492 1.00301 0.99813 1.21145 0.94974 0.99234 0.93941 0.92498 1.19063 0.96062 0.95154 0.90339 1.21227 1.34157 1.08095 0.91118 0.92837 1.25002 0.95496 0.95118 0.98945 1.69961 1.39365 1.21305 1.23237 0.86732 0.78854 0.80138 0.82690 1.20403 1.21459 1.20347 1.22570 1.00029 0.96284 0.88588 1.62290 1.58562 1.02079 1.01465 1.22398 0.89605 0.92325 1.03791 1.23052 0.96388 0.96374 0.88791 1.86835 1.24069 1.83243 1.41102 1.21142 0.97365 0.97716 0.88272 1.19866 0.94907 0.96155 0.95782 1.21072 0.94500 1.00047 0.96157 1.21151 0.99823 0.96842 0.96136 1.21096 0.95494 0.97780 1.00165 1.21079 0.95710 1.00082 0.97240 1.21094 0.99997 0.96661 0.96031 0.94163 0.93104 0.94395 0.96699 0.97039 0.93208 0.91666 0.92415 0.88892 0.90031 0.94054 0.93733 0.78644 0.93765 0.90185 0.85903 0.86280 0.86488 0.86430 0.86566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.57 8.87 37.16 0.33 -2.24 16 2 C -0.07 -1.60 2.14 -90.62 -0.19 -1.79 16 3 H 0.06 1.27 6.09 -51.93 -0.32 0.96 16 4 C 0.03 0.84 4.45 -27.88 -0.12 0.71 16 5 C -0.51 -14.70 8.41 -34.44 -0.29 -14.99 16 6 H 0.05 1.52 7.06 -52.49 -0.37 1.15 16 7 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.69 13.29 55.43 0.74 -26.95 16 9 Si 0.89 22.27 29.54 -169.99 -5.02 17.25 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 C 0.05 0.94 3.93 -3.83 -0.02 0.93 16 14 N -0.52 -7.91 4.11 -236.06 -0.97 -8.89 16 15 C 0.05 0.67 5.19 -3.82 -0.02 0.65 16 16 C 0.03 0.41 6.29 37.16 0.23 0.64 16 17 O -0.55 -8.01 10.53 -35.23 -0.37 -8.38 16 18 C 0.08 1.06 4.80 -4.97 -0.02 1.03 16 19 C -0.07 -0.79 4.88 -104.63 -0.51 -1.30 16 20 C -0.10 -1.13 9.70 -39.58 -0.38 -1.51 16 21 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 22 C -0.13 -1.20 10.05 -39.58 -0.40 -1.60 16 23 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 24 C -0.12 -1.26 8.04 -39.58 -0.32 -1.58 16 25 H 0.04 0.75 7.69 -51.93 -0.40 0.35 16 26 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.07 1.24 5.25 -51.93 -0.27 0.97 16 32 H 0.06 1.07 8.03 -51.92 -0.42 0.66 16 33 H 0.09 1.54 5.84 -51.93 -0.30 1.23 16 34 H 0.08 1.06 6.51 -51.93 -0.34 0.72 16 35 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.04 0.49 4.50 -51.93 -0.23 0.26 16 37 H 0.37 3.79 9.12 45.56 0.42 4.21 16 38 H 0.04 0.55 5.66 -51.93 -0.29 0.25 16 39 H 0.08 1.02 7.94 -51.93 -0.41 0.61 16 40 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 41 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 42 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 44 H 0.12 1.10 6.23 -52.49 -0.33 0.77 16 LS Contribution 341.07 15.07 5.14 5.14 Total: -1.00 -32.33 341.07 -9.24 -41.57 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -6.15 Total: 3.01 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: -2.61 Total: -22.75 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: -0.23 Total: -35.84 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: -0.37 Total: -8.38 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.33 -9.24 -41.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602429266.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.211 kcal (2) G-P(sol) polarization free energy of solvation -32.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds