Wall clock time and date at job start Mon Mar 30 2020 01:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46946 * 2 1 4 4 C 1.53003 * 109.46896 * 240.00291 * 2 1 3 5 5 C 1.50699 * 109.47208 * 64.99744 * 4 2 1 6 6 H 1.08000 * 119.99915 * 0.02562 * 5 4 2 7 7 C 1.37871 * 119.99858 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00076 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99858 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46956 * 60.00200 * 9 7 5 11 11 H 1.48497 * 109.46839 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47106 * 300.00443 * 9 7 5 13 13 C 1.52998 * 109.47262 * 120.00010 * 2 1 3 14 14 N 1.46898 * 109.47213 * 296.89384 * 13 2 1 15 15 C 1.46898 * 110.99782 * 298.93893 * 14 13 2 16 16 C 1.53007 * 109.47038 * 290.81980 * 15 14 13 17 17 O 1.42898 * 109.46970 * 67.68937 * 16 15 14 18 18 C 1.46905 * 110.99922 * 174.99008 * 14 13 2 19 19 C 1.50703 * 109.46701 * 189.99834 * 18 14 13 20 20 C 1.38233 * 119.99955 * 89.99872 * 19 18 14 21 21 C 1.38240 * 119.99989 * 179.97438 * 20 19 18 22 22 C 1.38237 * 119.99583 * 0.07650 * 21 20 19 23 23 C 1.38230 * 120.00211 * 359.89927 * 22 21 20 24 24 C 1.38228 * 119.99758 * 269.97138 * 19 18 14 25 25 H 1.09002 * 109.46878 * 299.99485 * 1 2 3 26 26 H 1.09002 * 109.47326 * 59.99980 * 1 2 3 27 27 H 1.09002 * 109.46946 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46751 * 184.99654 * 4 2 1 29 29 H 1.09002 * 109.46793 * 304.99533 * 4 2 1 30 30 H 0.97004 * 120.00080 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47196 * 176.88473 * 13 2 1 32 32 H 1.09009 * 109.46591 * 56.88876 * 13 2 1 33 33 H 1.08995 * 109.47169 * 50.81712 * 15 14 13 34 34 H 1.08999 * 109.47402 * 170.82369 * 15 14 13 35 35 H 1.09003 * 109.47012 * 187.68978 * 16 15 14 36 36 H 1.08995 * 109.47124 * 307.68693 * 16 15 14 37 37 H 0.96703 * 113.99926 * 180.02562 * 17 16 15 38 38 H 1.08991 * 109.47531 * 69.99617 * 18 14 13 39 39 H 1.09005 * 109.46351 * 309.99114 * 18 14 13 40 40 H 1.08000 * 120.00162 * 359.69801 * 20 19 18 41 41 H 1.07992 * 120.00149 * 179.97438 * 21 20 19 42 42 H 1.07996 * 119.99683 * 179.97438 * 22 21 20 43 43 H 1.08002 * 120.00232 * 180.02562 * 23 22 21 44 44 H 1.08001 * 120.00014 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4766 6 1 1.0806 0.9746 -2.3756 7 6 1.9931 -0.4016 -3.7283 8 7 2.6763 -1.5186 -3.8512 9 14 1.4982 0.5628 -5.2496 10 1 2.0893 1.9237 -5.1870 11 1 1.9943 -0.1365 -6.4621 12 1 0.0182 0.6683 -5.3091 13 6 2.0400 -0.7212 1.2492 14 7 1.6126 0.0132 2.4475 15 6 2.1658 1.3740 2.4560 16 6 3.6789 1.3082 2.6733 17 8 4.2987 0.7143 1.5309 18 6 1.9824 -0.7130 3.6698 19 6 1.3211 -0.0646 4.8587 20 6 0.0681 -0.4829 5.2660 21 6 -0.5383 0.1115 6.3568 22 6 0.1077 1.1253 7.0393 23 6 1.3608 1.5432 6.6323 24 6 1.9677 0.9481 5.5421 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1263 -0.7994 -1.2057 29 1 1.6054 -1.7198 -1.2952 30 1 2.9235 -1.8415 -4.7318 31 1 3.1286 -0.7699 1.2217 32 1 1.6318 -1.7316 1.2775 33 1 1.9564 1.8573 1.5017 34 1 1.7077 1.9474 3.2619 35 1 4.0696 2.3157 2.8160 36 1 3.8933 0.7069 3.5567 37 1 5.2604 0.6399 1.5993 38 1 3.0646 -0.6848 3.7959 39 1 1.6525 -1.7489 3.5907 40 1 -0.4390 -1.2711 4.7292 41 1 -1.5174 -0.2151 6.6748 42 1 -0.3662 1.5899 7.8913 43 1 1.8657 2.3350 7.1658 44 1 2.9470 1.2743 5.2244 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602429266.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:18 Heat of formation + Delta-G solvation = -47.200562 kcal Electronic energy + Delta-G solvation = -22024.014855 eV Core-core repulsion = 18940.182838 eV Total energy + Delta-G solvation = -3083.832017 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.74806 -39.23961 -37.13793 -35.98260 -34.15666 -32.24287 -31.74132 -30.09616 -28.83038 -27.34236 -25.89982 -24.55802 -23.37012 -22.97253 -21.22907 -20.10434 -18.64258 -18.36434 -17.54481 -17.31294 -16.74490 -16.23071 -16.11252 -15.65714 -15.48919 -14.84657 -14.47263 -14.35064 -14.16824 -14.10093 -13.71399 -13.46792 -13.22099 -13.05282 -13.02600 -12.72790 -12.61495 -12.53467 -12.25361 -12.14784 -11.98236 -11.82286 -11.74596 -11.38852 -11.01222 -10.82463 -10.64356 -10.47926 -9.73432 -9.61389 -8.96954 -8.14090 -6.22865 0.49631 0.58179 1.39639 1.43102 1.50641 2.43721 2.82434 3.18595 3.27322 3.48869 3.88030 3.95040 4.09137 4.21044 4.25506 4.32020 4.35406 4.42802 4.50978 4.53972 4.60631 4.72041 4.73345 4.84352 4.87777 4.94871 5.03366 5.16916 5.18498 5.23751 5.25961 5.34135 5.51794 5.54857 5.61099 5.63984 5.69426 5.79593 5.89815 5.94974 6.16727 6.22444 6.29209 6.38103 6.92272 6.92805 7.44525 8.97903 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029953 B = 0.003754 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.575678 B = 7457.556092 C = 7816.683248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.063 4.063 3 H 0.050 0.950 4 C 0.040 3.960 5 C -0.527 4.527 6 H 0.056 0.944 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.960 3.040 10 H -0.268 1.268 11 H -0.283 1.283 12 H -0.268 1.268 13 C 0.065 3.935 14 N -0.525 5.525 15 C 0.047 3.953 16 C 0.036 3.964 17 O -0.579 6.579 18 C 0.087 3.913 19 C -0.082 4.082 20 C -0.116 4.116 21 C -0.128 4.128 22 C -0.128 4.128 23 C -0.126 4.126 24 C -0.125 4.125 25 H 0.061 0.939 26 H 0.034 0.966 27 H 0.033 0.967 28 H -0.015 1.015 29 H -0.016 1.016 30 H 0.261 0.739 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.384 0.616 38 H 0.051 0.949 39 H 0.075 0.925 40 H 0.119 0.881 41 H 0.136 0.864 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.859 6.107 23.437 24.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.081 4.081 3 H 0.068 0.932 4 C 0.003 3.997 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.785 3.215 10 H -0.193 1.193 11 H -0.209 1.209 12 H -0.193 1.193 13 C -0.062 4.062 14 N -0.247 5.247 15 C -0.081 4.081 16 C -0.042 4.042 17 O -0.387 6.387 18 C -0.040 4.040 19 C -0.082 4.082 20 C -0.135 4.135 21 C -0.146 4.146 22 C -0.147 4.147 23 C -0.144 4.144 24 C -0.143 4.143 25 H 0.080 0.920 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.003 0.997 29 H 0.002 0.998 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.116 0.884 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.233 0.767 38 H 0.069 0.931 39 H 0.094 0.906 40 H 0.137 0.863 41 H 0.154 0.846 42 H 0.159 0.841 43 H 0.159 0.841 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.921 5.990 23.086 23.928 hybrid contribution 1.380 -0.012 -1.032 1.723 sum -0.541 5.978 22.054 22.856 Atomic orbital electron populations 1.21504 0.95523 1.00082 0.99991 1.20916 0.95577 0.98353 0.93280 0.93213 1.18916 0.93969 0.94172 0.92656 1.21602 1.34259 1.08409 0.92254 0.92545 1.25938 0.95307 0.96133 1.02539 1.70103 1.40375 1.22958 1.24209 0.85584 0.78917 0.78789 0.78257 1.19327 1.20852 1.19270 1.22226 0.99376 0.95726 0.88832 1.62198 1.58925 1.02472 1.01133 1.22387 0.91345 0.91476 1.02918 1.23058 0.94885 0.97735 0.88546 1.86766 1.25814 1.83669 1.42483 1.21111 0.97903 0.97384 0.87606 1.19785 0.95390 0.97212 0.95818 1.21194 0.94725 1.00542 0.97030 1.21408 1.00624 0.96898 0.95682 1.21454 0.95466 0.97222 1.00511 1.21406 0.95835 1.00306 0.96841 1.21254 1.00476 0.96304 0.96313 0.91972 0.94735 0.94766 0.99682 0.99795 0.92999 0.92384 0.93191 0.91540 0.88399 0.92019 0.92021 0.76683 0.93119 0.90633 0.86274 0.84604 0.84106 0.84103 0.85527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.72 8.87 71.98 0.64 -4.08 16 2 C -0.06 -2.77 2.14 -10.79 -0.02 -2.79 16 3 H 0.05 2.28 6.09 -2.39 -0.01 2.27 16 4 C 0.04 2.25 4.45 29.85 0.13 2.39 16 5 C -0.53 -31.23 8.41 25.60 0.22 -31.01 16 6 H 0.06 3.24 7.06 -2.91 -0.02 3.22 16 7 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 8 N -0.94 -58.93 13.29 21.44 0.28 -58.65 16 9 Si 0.96 45.91 29.54 68.60 2.03 47.94 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 11 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 13 C 0.07 2.44 3.93 86.30 0.34 2.78 16 14 N -0.52 -15.69 4.11 -900.77 -3.70 -19.40 16 15 C 0.05 1.28 5.19 86.31 0.45 1.73 16 16 C 0.04 0.84 6.29 71.98 0.45 1.29 16 17 O -0.58 -16.81 10.53 -148.98 -1.57 -18.38 16 18 C 0.09 2.16 4.80 85.56 0.41 2.57 16 19 C -0.08 -1.81 4.88 -19.87 -0.10 -1.90 16 20 C -0.12 -2.52 9.70 22.27 0.22 -2.30 16 21 C -0.13 -2.31 10.05 22.27 0.22 -2.09 16 22 C -0.13 -2.04 10.05 22.27 0.22 -1.82 16 23 C -0.13 -2.03 10.05 22.27 0.22 -1.81 16 24 C -0.13 -2.34 8.04 22.27 0.18 -2.16 16 25 H 0.06 2.29 7.69 -2.39 -0.02 2.27 16 26 H 0.03 1.51 6.95 -2.39 -0.02 1.49 16 27 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 28 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 29 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 30 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 31 H 0.06 2.27 5.25 -2.39 -0.01 2.26 16 32 H 0.05 1.91 8.03 -2.38 -0.02 1.90 16 33 H 0.07 2.18 5.84 -2.39 -0.01 2.17 16 34 H 0.10 2.35 6.51 -2.39 -0.02 2.33 16 35 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.06 1.21 4.50 -2.39 -0.01 1.20 16 37 H 0.38 7.75 9.12 -74.06 -0.68 7.08 16 38 H 0.05 1.19 5.66 -2.39 -0.01 1.18 16 39 H 0.08 1.92 7.94 -2.38 -0.02 1.90 16 40 H 0.12 2.55 8.06 -2.91 -0.02 2.53 16 41 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 42 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 43 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 44 H 0.13 2.03 6.23 -2.91 -0.02 2.02 16 Total: -1.00 -70.44 341.07 1.40 -69.05 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.31 Total: 18.31 kcal Atomic # 6 Polarization: -42.92 SS G_CDS: 4.05 Total: -38.88 kcal Atomic # 7 Polarization: -74.63 SS G_CDS: -3.42 Total: -78.05 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -1.57 Total: -18.38 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -70.44 1.40 -69.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602429266.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.848 kcal (2) G-P(sol) polarization free energy of solvation -70.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds