Wall clock time and date at job start Mon Mar 30 2020 01:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35898 * 117.00289 * 2 1 4 4 C 1.38757 * 120.05153 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.94228 * 179.97438 * 4 3 2 6 6 C 1.38285 * 120.05743 * 359.74797 * 5 4 3 7 7 C 1.38245 * 120.10788 * 0.51078 * 6 5 4 8 8 C 1.50705 * 119.97132 * 179.76844 * 7 6 5 9 9 N 1.46894 * 109.47098 * 269.71994 * 8 7 6 10 10 C 1.46904 * 110.99947 * 66.04386 * 9 8 7 11 11 C 1.46896 * 111.00407 * 189.99798 * 9 8 7 12 12 C 1.52993 * 109.47431 * 163.72189 * 11 9 8 13 13 H 1.08999 * 109.47549 * 54.73112 * 12 11 9 14 14 C 1.53003 * 109.47317 * 174.73244 * 12 11 9 15 15 C 1.53003 * 109.46932 * 294.72965 * 12 11 9 16 16 C 1.50707 * 109.47187 * 175.00201 * 15 12 11 17 17 H 1.08004 * 119.99696 * 0.02562 * 16 15 12 18 18 C 1.37869 * 120.00289 * 180.02562 * 16 15 12 19 19 N 1.31520 * 120.00126 * 359.72371 * 18 16 15 20 20 Si 1.86797 * 120.00121 * 179.97438 * 18 16 15 21 21 H 1.48510 * 109.47189 * 179.72694 * 20 18 16 22 22 H 1.48503 * 109.47227 * 299.72343 * 20 18 16 23 23 H 1.48499 * 109.47301 * 59.72579 * 20 18 16 24 24 C 1.38164 * 120.05850 * 359.48577 * 7 6 5 25 25 H 1.09007 * 109.46806 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47238 * 299.99684 * 1 2 3 27 27 H 1.08994 * 109.47099 * 60.00408 * 1 2 3 28 28 H 1.08005 * 120.02824 * 359.95455 * 4 3 2 29 29 H 1.08005 * 119.97071 * 180.02562 * 5 4 3 30 30 H 1.07994 * 119.94480 * 180.27349 * 6 5 4 31 31 H 1.09001 * 109.47070 * 149.72009 * 8 7 6 32 32 H 1.09001 * 109.47033 * 29.72105 * 8 7 6 33 33 H 1.08999 * 109.47246 * 178.24274 * 10 9 8 34 34 H 1.08998 * 109.47186 * 298.24081 * 10 9 8 35 35 H 1.09002 * 109.47160 * 58.24281 * 10 9 8 36 36 H 1.09005 * 109.47034 * 43.72012 * 11 9 8 37 37 H 1.08999 * 109.47005 * 283.72712 * 11 9 8 38 38 H 1.09000 * 109.46959 * 56.68489 * 14 12 11 39 39 H 1.09001 * 109.47213 * 176.68512 * 14 12 11 40 40 H 1.09000 * 109.47178 * 296.68511 * 14 12 11 41 41 H 1.08998 * 109.47330 * 55.00180 * 15 12 11 42 42 H 1.08999 * 109.47389 * 294.99656 * 15 12 11 43 43 H 0.97006 * 119.99536 * 0.27421 * 19 18 16 44 44 H 1.08000 * 120.03267 * 180.24029 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3019 3.6758 0.0063 7 6 4.0559 2.5171 0.0004 8 6 5.5608 2.5981 0.0009 9 7 6.0502 2.6248 -1.3839 10 6 5.6339 3.8577 -2.0656 11 6 7.5097 2.4650 -1.4297 12 6 7.9377 2.0932 -2.8507 13 1 7.5559 2.8358 -3.5513 14 6 9.4652 2.0553 -2.9298 15 6 7.3742 0.7166 -3.2093 16 6 7.6913 0.4035 -4.6489 17 1 8.2402 1.1150 -5.2481 18 6 7.2806 -0.7912 -5.2012 19 7 6.6169 -1.6599 -4.4701 20 14 7.6730 -1.1790 -6.9858 21 1 7.1314 -2.5177 -7.3322 22 1 7.0544 -0.1527 -7.8630 23 1 9.1451 -1.1749 -7.1812 24 6 3.4311 1.2848 0.0000 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 0.2128 2.3203 0.0002 29 1 1.3340 4.5114 0.0019 30 1 3.7922 4.6380 0.0112 31 1 5.9713 1.7288 0.5146 32 1 5.8756 3.5062 0.5151 33 1 6.0357 3.8660 -3.0789 34 1 4.5456 3.9009 -2.1060 35 1 6.0118 4.7211 -1.5179 36 1 7.8105 1.6753 -0.7412 37 1 7.9870 3.4011 -1.1396 38 1 9.8502 1.3555 -2.1882 39 1 9.7696 1.7333 -3.9257 40 1 9.8641 3.0502 -2.7320 41 1 6.2935 0.7182 -3.0673 42 1 7.8242 -0.0391 -2.5655 43 1 6.4129 -1.4584 -3.5434 44 1 4.0206 0.3799 -0.0008 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602431335.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:00 Heat of formation + Delta-G solvation = -24.378398 kcal Electronic energy + Delta-G solvation = -21647.366468 eV Core-core repulsion = 18564.524094 eV Total energy + Delta-G solvation = -3082.842374 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.15087 -38.31970 -36.94380 -34.47116 -32.23152 -31.19922 -30.21407 -27.57762 -26.92083 -26.48554 -26.06126 -23.17755 -22.49265 -21.95048 -20.63676 -19.01100 -17.69971 -16.62085 -16.27357 -15.96822 -15.77558 -15.37720 -14.91269 -14.47324 -13.89767 -13.63323 -13.60971 -13.37273 -13.08489 -12.71335 -12.55499 -12.10154 -12.03942 -11.70704 -11.57032 -11.38373 -11.31186 -11.20801 -11.01850 -10.89686 -10.78378 -10.61772 -10.18753 -9.99438 -9.70823 -9.25889 -8.80483 -8.31653 -8.17215 -8.13130 -7.83971 -6.16385 -3.83035 1.34501 1.50336 3.26775 3.52034 3.54629 3.72947 3.73395 4.43594 4.68335 4.76013 4.81818 4.99678 5.05337 5.09651 5.19519 5.34445 5.37249 5.46647 5.52757 5.60497 5.62289 5.66721 5.77679 5.85342 5.96289 6.03867 6.09449 6.21989 6.25296 6.33457 6.34620 6.43122 6.48883 6.65428 6.80294 6.92891 7.01380 7.23448 7.41445 7.43421 7.48498 7.72568 7.91963 8.44751 8.68086 9.10251 9.88090 11.24403 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014665 B = 0.004696 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.873533 B = 5961.431796 C = 7327.711653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.316 6.316 3 C 0.126 3.874 4 C -0.213 4.213 5 C -0.085 4.085 6 C -0.152 4.152 7 C -0.031 4.031 8 C 0.092 3.908 9 N -0.524 5.524 10 C 0.024 3.976 11 C 0.063 3.937 12 C -0.076 4.076 13 H 0.057 0.943 14 C -0.133 4.133 15 C 0.023 3.977 16 C -0.595 4.595 17 H 0.044 0.956 18 C 0.013 3.987 19 N -0.917 5.917 20 Si 1.064 2.936 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.290 1.290 24 C -0.125 4.125 25 H 0.098 0.902 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.124 0.876 29 H 0.121 0.879 30 H 0.118 0.882 31 H 0.083 0.917 32 H 0.039 0.961 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.016 0.984 36 H 0.067 0.933 37 H 0.021 0.979 38 H 0.042 0.958 39 H 0.066 0.934 40 H 0.029 0.971 41 H 0.024 0.976 42 H -0.002 1.002 43 H 0.270 0.730 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.341 10.618 11.842 18.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.229 6.229 3 C 0.081 3.919 4 C -0.232 4.232 5 C -0.103 4.103 6 C -0.171 4.171 7 C -0.032 4.032 8 C -0.035 4.035 9 N -0.248 5.248 10 C -0.124 4.124 11 C -0.064 4.064 12 C -0.095 4.095 13 H 0.075 0.925 14 C -0.191 4.191 15 C -0.014 4.014 16 C -0.633 4.633 17 H 0.063 0.937 18 C -0.191 4.191 19 N -0.554 5.554 20 Si 0.893 3.107 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.217 1.217 24 C -0.144 4.144 25 H 0.117 0.883 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.142 0.858 29 H 0.139 0.861 30 H 0.136 0.864 31 H 0.101 0.899 32 H 0.057 0.943 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.035 0.965 36 H 0.085 0.915 37 H 0.039 0.961 38 H 0.061 0.939 39 H 0.085 0.915 40 H 0.048 0.952 41 H 0.043 0.957 42 H 0.017 0.983 43 H 0.080 0.920 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.630 8.869 10.411 16.727 hybrid contribution 0.222 2.040 1.522 2.555 sum -9.408 10.909 11.933 18.706 Atomic orbital electron populations 1.23024 0.78711 1.03836 1.01062 1.86114 1.21111 1.26980 1.88682 1.19024 0.92347 0.84089 0.96427 1.21166 0.99722 0.92491 1.09811 1.20818 0.94451 0.96778 0.98260 1.20925 0.93726 0.97825 1.04614 1.19544 0.95268 0.92120 0.96275 1.21082 0.90581 1.01204 0.90642 1.61868 1.12749 1.36774 1.13373 1.22461 1.01264 0.89082 0.99581 1.22313 0.85600 0.98665 0.99852 1.21086 0.94552 1.00961 0.92888 0.92455 1.21711 0.96152 0.98641 1.02591 1.19154 0.96475 0.89831 0.95967 1.22099 1.38960 1.05214 0.97045 0.93739 1.25714 0.94596 0.93194 1.05549 1.70745 1.37680 1.36925 1.10049 0.83624 0.75923 0.76064 0.75065 1.20956 1.21696 1.21693 1.20348 0.91147 0.98621 1.04289 0.88325 0.92947 0.92706 0.85836 0.86106 0.86354 0.89880 0.94287 0.90827 0.91477 0.96514 0.91483 0.96086 0.93851 0.91503 0.95217 0.95734 0.98329 0.91971 0.84874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.32 -4.52 10.50 -19.42 -0.20 -4.72 16 3 C 0.13 1.85 6.69 -39.22 -0.26 1.58 16 4 C -0.21 -2.62 9.04 -39.43 -0.36 -2.97 16 5 C -0.08 -0.99 10.04 -39.61 -0.40 -1.38 16 6 C -0.15 -1.91 8.02 -39.56 -0.32 -2.23 16 7 C -0.03 -0.45 4.87 -104.64 -0.51 -0.96 16 8 C 0.09 1.33 5.11 -4.98 -0.03 1.30 16 9 N -0.52 -8.98 4.09 -244.38 -1.00 -9.98 16 10 C 0.02 0.38 8.95 60.07 0.54 0.91 16 11 C 0.06 1.10 4.36 -3.83 -0.02 1.09 16 12 C -0.08 -1.60 2.36 -90.62 -0.21 -1.81 16 13 H 0.06 1.24 6.51 -51.93 -0.34 0.90 16 14 C -0.13 -2.58 9.05 37.16 0.34 -2.24 16 15 C 0.02 0.60 3.71 -27.88 -0.10 0.49 16 16 C -0.59 -17.30 8.36 -34.44 -0.29 -17.59 16 17 H 0.04 1.27 7.07 -52.48 -0.37 0.90 16 18 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 19 N -0.92 -29.20 13.65 55.43 0.76 -28.44 16 20 Si 1.06 26.25 29.90 -169.99 -5.08 21.17 16 21 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 C -0.12 -1.96 9.64 -39.43 -0.38 -2.34 16 25 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.40 7.66 -51.93 -0.40 0.01 16 27 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 28 H 0.12 1.21 6.30 -52.48 -0.33 0.88 16 29 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 30 H 0.12 1.29 8.04 -52.49 -0.42 0.86 16 31 H 0.08 1.17 7.80 -51.93 -0.41 0.77 16 32 H 0.04 0.50 8.05 -51.93 -0.42 0.08 16 33 H 0.07 1.24 6.45 -51.93 -0.33 0.90 16 34 H 0.07 1.01 6.29 -51.93 -0.33 0.69 16 35 H 0.02 0.22 8.13 -51.93 -0.42 -0.20 16 36 H 0.07 1.17 7.80 -51.93 -0.41 0.77 16 37 H 0.02 0.33 8.05 -51.93 -0.42 -0.09 16 38 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 1.41 6.86 -51.93 -0.36 1.06 16 40 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.02 0.69 7.50 -51.93 -0.39 0.31 16 42 H 0.00 -0.04 8.00 -51.93 -0.42 -0.46 16 43 H 0.27 8.63 7.22 -40.82 -0.29 8.34 16 44 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 350.88 15.07 5.29 5.29 Total: -1.00 -33.11 350.88 -8.70 -41.81 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -7.35 Total: -0.53 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: -1.10 Total: -24.59 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: -0.24 Total: -38.42 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: -0.20 Total: -4.72 kcal Atomic # 14 Polarization: 26.25 SS G_CDS: -5.08 Total: 21.17 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.11 -8.70 -41.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602431335.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.432 kcal (2) G-P(sol) polarization free energy of solvation -33.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds