Wall clock time and date at job start Mon Mar 30 2020 02:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46893 * 109.47197 * 2 1 4 4 C 1.46905 * 110.99790 * 199.27255 * 3 2 1 5 5 C 1.50695 * 109.47271 * 72.26623 * 4 3 2 6 6 H 1.07994 * 120.00109 * 359.97438 * 5 4 3 7 7 C 1.37882 * 120.00011 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99866 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00271 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46985 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47381 * 119.99577 * 9 7 5 12 12 H 1.48493 * 109.47114 * 239.99905 * 9 7 5 13 13 C 1.46897 * 111.00247 * 75.31533 * 3 2 1 14 14 C 1.53008 * 109.46953 * 209.23929 * 13 3 2 15 15 C 1.53000 * 109.47134 * 306.29543 * 14 13 3 16 16 C 1.53003 * 109.46842 * 186.29651 * 14 13 3 17 17 O 1.42893 * 109.46945 * 66.29931 * 14 13 3 18 18 C 1.35899 * 117.00276 * 64.58626 * 17 14 13 19 19 C 1.38738 * 120.05675 * 175.14521 * 18 17 14 20 20 C 1.38142 * 119.94467 * 179.97438 * 19 18 17 21 21 C 1.38270 * 120.05685 * 359.97438 * 20 19 18 22 22 C 1.38262 * 120.10705 * 0.05089 * 21 20 19 23 23 C 1.38147 * 120.06302 * 359.94910 * 22 21 20 24 24 H 1.09002 * 109.46741 * 304.40662 * 1 2 3 25 25 H 1.08996 * 109.47483 * 64.40491 * 1 2 3 26 26 H 1.09006 * 109.47252 * 184.40793 * 1 2 3 27 27 H 1.09003 * 109.46710 * 239.99799 * 2 1 3 28 28 H 1.08998 * 109.46884 * 120.00099 * 2 1 3 29 29 H 1.09004 * 109.46836 * 192.26617 * 4 3 2 30 30 H 1.08993 * 109.47029 * 312.25851 * 4 3 2 31 31 H 0.96998 * 119.99980 * 180.02562 * 8 7 5 32 32 H 1.08995 * 109.46949 * 89.24214 * 13 3 2 33 33 H 1.08997 * 109.47288 * 329.23799 * 13 3 2 34 34 H 1.08999 * 109.46692 * 184.39690 * 15 14 13 35 35 H 1.09004 * 109.46856 * 304.39544 * 15 14 13 36 36 H 1.08995 * 109.47056 * 64.40121 * 15 14 13 37 37 H 1.09000 * 109.46961 * 286.52895 * 16 14 13 38 38 H 1.09001 * 109.47331 * 46.52464 * 16 14 13 39 39 H 1.08993 * 109.47199 * 166.52513 * 16 14 13 40 40 H 1.08001 * 120.02620 * 359.70373 * 19 18 17 41 41 H 1.07999 * 119.97289 * 180.02562 * 20 19 18 42 42 H 1.08000 * 119.94318 * 180.02562 * 21 20 19 43 43 H 1.08007 * 119.97116 * 179.97438 * 22 21 20 44 44 H 1.07999 * 120.02745 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4157 1.4497 -0.4527 5 6 3.4753 1.1910 -1.9361 6 1 2.5671 0.9974 -2.4874 7 6 4.6896 1.2004 -2.5893 8 7 5.7957 1.4357 -1.9178 9 14 4.7636 0.8791 -4.4279 10 1 3.3916 0.6432 -4.9448 11 1 5.3555 2.0563 -5.1128 12 1 5.6026 -0.3183 -4.6877 13 6 1.8674 1.9972 1.3266 14 6 1.6715 3.5068 1.1721 15 6 2.8120 4.0858 0.3325 16 6 1.6700 4.1648 2.5534 17 8 0.4247 3.7611 0.5220 18 6 -0.7033 3.3945 1.1855 19 6 -1.9498 3.7023 0.6599 20 6 -3.0948 3.3280 1.3360 21 6 -2.9994 2.6468 2.5355 22 6 -1.7583 2.3394 3.0617 23 6 -0.6102 2.7114 2.3894 24 1 -0.3633 0.5807 0.8479 25 1 -0.3634 0.4439 -0.9268 26 1 -0.3634 -1.0247 0.0790 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8212 2.4388 -0.2397 30 1 4.0030 0.6958 0.0716 31 1 6.6499 1.4427 -2.3773 32 1 2.7615 1.8057 1.9198 33 1 1.0000 1.5676 1.8276 34 1 2.7156 5.1706 0.2877 35 1 3.7672 3.8244 0.7878 36 1 2.7655 3.6750 -0.6760 37 1 0.7332 3.9387 3.0626 38 1 2.5043 3.7802 3.1400 39 1 1.7715 5.2442 2.4417 40 1 -2.0248 4.2378 -0.2750 41 1 -4.0654 3.5670 0.9270 42 1 -3.8957 2.3548 3.0624 43 1 -1.6863 1.8076 3.9990 44 1 0.3590 2.4714 2.8012 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602437076.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:31 Heat of formation + Delta-G solvation = 19.283839 kcal Electronic energy + Delta-G solvation = -23003.872493 eV Core-core repulsion = 19922.923456 eV Total energy + Delta-G solvation = -3080.949037 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.63172 -37.87074 -36.37808 -33.24319 -32.62060 -31.01087 -29.73486 -29.67739 -27.54894 -26.77692 -24.66995 -22.63664 -22.33489 -22.06586 -20.20282 -19.85655 -17.14139 -16.53127 -16.25910 -15.46483 -15.22313 -14.78597 -14.64793 -14.23099 -13.94740 -13.76967 -13.37317 -13.14248 -12.68136 -12.39622 -12.32251 -12.10608 -11.88896 -11.78655 -11.70095 -11.44978 -11.27980 -11.05851 -11.02899 -10.74434 -10.63812 -10.48936 -10.13858 -10.04385 -9.90153 -9.55893 -9.03830 -8.78274 -8.35591 -7.85198 -7.16687 -6.00600 -4.00173 1.46770 1.65664 3.32287 3.40123 3.45740 3.59305 3.94612 4.44555 4.74630 4.97817 5.02352 5.15247 5.17877 5.29633 5.34441 5.42063 5.50164 5.60003 5.65971 5.75265 5.80834 5.83193 5.99839 6.07316 6.10341 6.13587 6.17348 6.23748 6.34080 6.41690 6.44038 6.51784 6.59374 6.65301 6.75978 6.84801 6.98767 7.05283 7.30461 7.38762 7.84056 7.90039 8.14367 8.25451 8.59022 9.08731 9.63677 11.09975 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023649 B = 0.005172 C = 0.004870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.703397 B = 5412.529952 C = 5747.937818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.059 3.941 3 N -0.523 5.523 4 C 0.169 3.831 5 C -0.499 4.499 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.900 5.900 9 Si 0.894 3.106 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.010 3.990 14 C 0.126 3.874 15 C -0.141 4.141 16 C -0.204 4.204 17 O -0.285 6.285 18 C 0.158 3.842 19 C -0.163 4.163 20 C -0.083 4.083 21 C -0.173 4.173 22 C -0.086 4.086 23 C -0.227 4.227 24 H 0.048 0.952 25 H 0.057 0.943 26 H 0.043 0.957 27 H 0.082 0.918 28 H 0.014 0.986 29 H 0.055 0.945 30 H -0.014 1.014 31 H 0.259 0.741 32 H 0.040 0.960 33 H 0.083 0.917 34 H 0.048 0.952 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.126 0.874 41 H 0.122 0.878 42 H 0.115 0.885 43 H 0.118 0.882 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.939 3.455 10.314 16.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.069 4.069 3 N -0.247 5.247 4 C 0.045 3.955 5 C -0.538 4.538 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.541 5.541 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.213 1.213 13 C -0.118 4.118 14 C 0.088 3.912 15 C -0.197 4.197 16 C -0.262 4.262 17 O -0.198 6.198 18 C 0.111 3.889 19 C -0.181 4.181 20 C -0.101 4.101 21 C -0.191 4.191 22 C -0.105 4.105 23 C -0.245 4.245 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.062 0.938 27 H 0.100 0.900 28 H 0.032 0.968 29 H 0.073 0.927 30 H 0.003 0.997 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.101 0.899 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.121 0.879 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.144 0.856 41 H 0.140 0.860 42 H 0.134 0.866 43 H 0.136 0.864 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -12.976 3.823 9.748 16.674 hybrid contribution 0.827 -0.820 -0.211 1.184 sum -12.149 3.002 9.537 15.734 Atomic orbital electron populations 1.21809 0.96513 0.99726 1.02048 1.21948 0.94327 0.90270 1.00403 1.62017 1.24984 1.16365 1.21341 1.20318 0.81516 0.97967 0.95713 1.21201 0.92764 1.46915 0.92930 0.91913 1.24960 0.95652 0.95700 0.98282 1.69960 0.97916 1.50467 1.35723 0.86498 0.78048 0.77685 0.85558 1.19684 1.21073 1.21264 1.23125 1.01004 0.94410 0.93303 1.21814 0.82659 0.94910 0.91801 1.22084 0.94767 0.99520 1.03358 1.22982 1.03849 1.01884 0.97456 1.86227 1.12151 1.76794 1.44639 1.19003 0.87340 0.92046 0.90470 1.20440 0.89842 1.05769 1.02072 1.20872 0.97486 0.97042 0.94685 1.20918 0.97303 1.03349 0.97569 1.20926 0.92212 0.98212 0.99101 1.21909 1.00273 1.04858 0.97426 0.93339 0.92402 0.93795 0.89961 0.96781 0.92737 0.99655 0.93106 0.94142 0.89944 0.93331 0.90645 0.87851 0.90007 0.91117 0.91659 0.85561 0.86036 0.86644 0.86443 0.83523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 10.05 37.16 0.37 -2.08 16 2 C 0.06 1.17 5.46 -3.83 -0.02 1.15 16 3 N -0.52 -11.10 3.98 -236.08 -0.94 -12.03 16 4 C 0.17 4.25 3.58 -4.98 -0.02 4.23 16 5 C -0.50 -13.80 8.36 -34.44 -0.29 -14.09 16 6 H 0.06 1.77 7.71 -52.49 -0.40 1.36 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.25 13.29 55.43 0.74 -25.52 16 9 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 C 0.01 0.18 3.60 -3.82 -0.01 0.17 16 14 C 0.13 2.11 0.88 -90.61 -0.08 2.03 16 15 C -0.14 -2.57 7.09 37.16 0.26 -2.30 16 16 C -0.20 -2.74 8.06 37.16 0.30 -2.44 16 17 O -0.29 -5.08 9.75 -19.42 -0.19 -5.27 16 18 C 0.16 2.46 5.99 -39.21 -0.23 2.23 16 19 C -0.16 -2.30 9.99 -39.43 -0.39 -2.69 16 20 C -0.08 -0.98 10.04 -39.60 -0.40 -1.38 16 21 C -0.17 -1.97 10.04 -39.56 -0.40 -2.37 16 22 C -0.09 -1.03 10.04 -39.61 -0.40 -1.43 16 23 C -0.23 -3.12 4.90 -39.43 -0.19 -3.31 16 24 H 0.05 0.80 5.65 -51.93 -0.29 0.51 16 25 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 1.79 7.07 -51.93 -0.37 1.43 16 28 H 0.01 0.27 8.01 -51.93 -0.42 -0.15 16 29 H 0.05 1.38 3.96 -51.93 -0.21 1.18 16 30 H -0.01 -0.39 8.05 -51.93 -0.42 -0.81 16 31 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.04 0.72 7.77 -51.93 -0.40 0.32 16 33 H 0.08 1.35 3.00 -51.93 -0.16 1.19 16 34 H 0.05 0.79 8.09 -51.93 -0.42 0.37 16 35 H 0.07 1.37 7.15 -51.93 -0.37 1.00 16 36 H 0.10 2.27 6.18 -51.93 -0.32 1.95 16 37 H 0.08 1.03 4.35 -51.93 -0.23 0.81 16 38 H 0.07 0.86 8.01 -51.93 -0.42 0.44 16 39 H 0.06 0.83 8.04 -51.93 -0.42 0.41 16 40 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 41 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 42 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 43 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 44 H 0.15 1.97 3.44 -52.49 -0.18 1.79 16 LS Contribution 334.71 15.07 5.04 5.04 Total: -1.00 -29.58 334.71 -8.65 -38.23 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -6.69 Total: 3.74 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: -1.60 Total: -20.85 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: -0.20 Total: -37.55 kcal Atomic # 8 Polarization: -5.08 SS G_CDS: -0.19 Total: -5.27 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.58 -8.65 -38.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602437076.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.513 kcal (2) G-P(sol) polarization free energy of solvation -29.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds