Wall clock time and date at job start Mon Mar 30 2020 02:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46893 * 109.47197 * 2 1 4 4 C 1.46905 * 110.99790 * 199.27255 * 3 2 1 5 5 C 1.50695 * 109.47271 * 72.26623 * 4 3 2 6 6 H 1.07994 * 120.00109 * 359.97438 * 5 4 3 7 7 C 1.37882 * 120.00011 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99866 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00271 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46985 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47381 * 119.99577 * 9 7 5 12 12 H 1.48493 * 109.47114 * 239.99905 * 9 7 5 13 13 C 1.46897 * 111.00247 * 75.31533 * 3 2 1 14 14 C 1.53008 * 109.46953 * 209.23929 * 13 3 2 15 15 C 1.53000 * 109.47134 * 306.29543 * 14 13 3 16 16 C 1.53003 * 109.46842 * 186.29651 * 14 13 3 17 17 O 1.42893 * 109.46945 * 66.29931 * 14 13 3 18 18 C 1.35899 * 117.00276 * 64.58626 * 17 14 13 19 19 C 1.38738 * 120.05675 * 175.14521 * 18 17 14 20 20 C 1.38142 * 119.94467 * 179.97438 * 19 18 17 21 21 C 1.38270 * 120.05685 * 359.97438 * 20 19 18 22 22 C 1.38262 * 120.10705 * 0.05089 * 21 20 19 23 23 C 1.38147 * 120.06302 * 359.94910 * 22 21 20 24 24 H 1.09002 * 109.46741 * 304.40662 * 1 2 3 25 25 H 1.08996 * 109.47483 * 64.40491 * 1 2 3 26 26 H 1.09006 * 109.47252 * 184.40793 * 1 2 3 27 27 H 1.09003 * 109.46710 * 239.99799 * 2 1 3 28 28 H 1.08998 * 109.46884 * 120.00099 * 2 1 3 29 29 H 1.09004 * 109.46836 * 192.26617 * 4 3 2 30 30 H 1.08993 * 109.47029 * 312.25851 * 4 3 2 31 31 H 0.96998 * 119.99980 * 180.02562 * 8 7 5 32 32 H 1.08995 * 109.46949 * 89.24214 * 13 3 2 33 33 H 1.08997 * 109.47288 * 329.23799 * 13 3 2 34 34 H 1.08999 * 109.46692 * 184.39690 * 15 14 13 35 35 H 1.09004 * 109.46856 * 304.39544 * 15 14 13 36 36 H 1.08995 * 109.47056 * 64.40121 * 15 14 13 37 37 H 1.09000 * 109.46961 * 286.52895 * 16 14 13 38 38 H 1.09001 * 109.47331 * 46.52464 * 16 14 13 39 39 H 1.08993 * 109.47199 * 166.52513 * 16 14 13 40 40 H 1.08001 * 120.02620 * 359.70373 * 19 18 17 41 41 H 1.07999 * 119.97289 * 180.02562 * 20 19 18 42 42 H 1.08000 * 119.94318 * 180.02562 * 21 20 19 43 43 H 1.08007 * 119.97116 * 179.97438 * 22 21 20 44 44 H 1.07999 * 120.02745 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4157 1.4497 -0.4527 5 6 3.4753 1.1910 -1.9361 6 1 2.5671 0.9974 -2.4874 7 6 4.6896 1.2004 -2.5893 8 7 5.7957 1.4357 -1.9178 9 14 4.7636 0.8791 -4.4279 10 1 3.3916 0.6432 -4.9448 11 1 5.3555 2.0563 -5.1128 12 1 5.6026 -0.3183 -4.6877 13 6 1.8674 1.9972 1.3266 14 6 1.6715 3.5068 1.1721 15 6 2.8120 4.0858 0.3325 16 6 1.6700 4.1648 2.5534 17 8 0.4247 3.7611 0.5220 18 6 -0.7033 3.3945 1.1855 19 6 -1.9498 3.7023 0.6599 20 6 -3.0948 3.3280 1.3360 21 6 -2.9994 2.6468 2.5355 22 6 -1.7583 2.3394 3.0617 23 6 -0.6102 2.7114 2.3894 24 1 -0.3633 0.5807 0.8479 25 1 -0.3634 0.4439 -0.9268 26 1 -0.3634 -1.0247 0.0790 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8212 2.4388 -0.2397 30 1 4.0030 0.6958 0.0716 31 1 6.6499 1.4427 -2.3773 32 1 2.7615 1.8057 1.9198 33 1 1.0000 1.5676 1.8276 34 1 2.7156 5.1706 0.2877 35 1 3.7672 3.8244 0.7878 36 1 2.7655 3.6750 -0.6760 37 1 0.7332 3.9387 3.0626 38 1 2.5043 3.7802 3.1400 39 1 1.7715 5.2442 2.4417 40 1 -2.0248 4.2378 -0.2750 41 1 -4.0654 3.5670 0.9270 42 1 -3.8957 2.3548 3.0624 43 1 -1.6863 1.8076 3.9990 44 1 0.3590 2.4714 2.8012 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602437076.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:30 Heat of formation + Delta-G solvation = 2.407066 kcal Electronic energy + Delta-G solvation = -23004.604325 eV Core-core repulsion = 19922.923456 eV Total energy + Delta-G solvation = -3081.680869 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.82720 -39.09860 -37.82173 -34.81400 -34.46022 -32.14708 -31.24327 -30.72076 -29.28350 -28.12714 -26.35597 -24.09810 -23.67303 -23.19147 -21.78848 -21.15797 -18.60223 -18.09092 -17.67373 -16.77622 -16.60195 -16.46461 -16.03857 -15.67671 -15.29468 -14.97564 -14.71460 -14.36558 -14.26159 -13.96905 -13.84010 -13.47147 -13.25926 -13.04737 -12.93038 -12.86448 -12.79610 -12.55081 -12.52129 -12.41492 -12.23550 -12.04774 -11.59586 -11.58122 -11.51113 -11.09564 -10.95437 -10.47804 -9.75683 -9.00866 -8.81547 -8.16876 -6.23897 0.49995 0.66332 1.38489 1.40065 1.52810 2.38656 2.42663 2.96556 3.15118 3.26716 3.77884 3.93259 4.03002 4.04910 4.10485 4.24681 4.35372 4.45168 4.46691 4.55014 4.61485 4.63750 4.67078 4.72119 4.77716 4.85131 4.93142 4.96932 5.02854 5.15831 5.18590 5.19737 5.22309 5.38115 5.43342 5.45948 5.57696 5.62295 5.70436 5.71483 6.04068 6.14798 6.42910 6.66843 6.76646 6.91850 7.44271 8.93282 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023649 B = 0.005172 C = 0.004870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.703397 B = 5412.529952 C = 5747.937818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.056 3.944 3 N -0.531 5.531 4 C 0.185 3.815 5 C -0.512 4.512 6 H 0.051 0.949 7 C 0.006 3.994 8 N -0.931 5.931 9 Si 0.959 3.041 10 H -0.270 1.270 11 H -0.278 1.278 12 H -0.279 1.279 13 C 0.011 3.989 14 C 0.128 3.872 15 C -0.135 4.135 16 C -0.196 4.196 17 O -0.312 6.312 18 C 0.130 3.870 19 C -0.181 4.181 20 C -0.081 4.081 21 C -0.168 4.168 22 C -0.086 4.086 23 C -0.234 4.234 24 H 0.056 0.944 25 H 0.042 0.958 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.022 0.978 29 H 0.049 0.951 30 H -0.048 1.048 31 H 0.263 0.737 32 H 0.038 0.962 33 H 0.102 0.898 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.121 0.879 41 H 0.148 0.852 42 H 0.146 0.854 43 H 0.145 0.855 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.163 3.247 11.553 19.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.072 4.072 3 N -0.254 5.254 4 C 0.059 3.941 5 C -0.551 4.551 6 H 0.069 0.931 7 C -0.192 4.192 8 N -0.572 5.572 9 Si 0.784 3.216 10 H -0.194 1.194 11 H -0.204 1.204 12 H -0.205 1.205 13 C -0.117 4.117 14 C 0.090 3.910 15 C -0.192 4.192 16 C -0.253 4.253 17 O -0.226 6.226 18 C 0.084 3.916 19 C -0.200 4.200 20 C -0.099 4.099 21 C -0.186 4.186 22 C -0.104 4.104 23 C -0.252 4.252 24 H 0.075 0.925 25 H 0.061 0.939 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.040 0.960 29 H 0.067 0.933 30 H -0.030 1.030 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.120 0.880 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.112 0.888 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.139 0.861 41 H 0.166 0.834 42 H 0.164 0.836 43 H 0.162 0.838 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -15.225 3.613 10.998 19.126 hybrid contribution 1.408 -0.756 -0.545 1.688 sum -13.817 2.857 10.453 17.560 Atomic orbital electron populations 1.21675 0.93928 1.01425 1.01566 1.21977 0.96337 0.89419 0.99445 1.61969 1.22222 1.17404 1.23847 1.20024 0.83446 0.96325 0.94298 1.21430 0.92481 1.46849 0.94329 0.93063 1.25743 0.95267 0.95423 1.02719 1.70062 0.98418 1.51272 1.37492 0.85489 0.78079 0.77790 0.80204 1.19405 1.20385 1.20512 1.23249 1.01614 0.95384 0.91452 1.21731 0.82131 0.94003 0.93113 1.21921 0.95605 1.00453 1.01175 1.22905 1.05016 1.01995 0.95349 1.86169 1.12894 1.77639 1.45917 1.19271 0.86893 0.93828 0.91613 1.20642 0.90350 1.06531 1.02487 1.21216 0.97774 0.96180 0.94704 1.21334 0.98288 1.01861 0.97100 1.21290 0.91750 0.97573 0.99808 1.21930 1.01120 1.05114 0.97036 0.92513 0.93896 0.91119 0.92703 0.95957 0.93287 1.03022 0.92856 0.94414 0.87992 0.91670 0.91250 0.92105 0.88820 0.89893 0.90968 0.86085 0.83422 0.83608 0.83751 0.83542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.25 10.05 71.98 0.72 -3.53 16 2 C 0.06 2.27 5.46 86.30 0.47 2.74 16 3 N -0.53 -23.21 3.98 -900.82 -3.58 -26.79 16 4 C 0.18 9.72 3.58 85.55 0.31 10.03 16 5 C -0.51 -29.43 8.36 25.60 0.21 -29.22 16 6 H 0.05 3.00 7.71 -2.91 -0.02 2.97 16 7 C 0.01 0.36 5.46 84.66 0.46 0.82 16 8 N -0.93 -55.72 13.29 21.45 0.28 -55.43 16 9 Si 0.96 45.28 29.54 68.60 2.03 47.30 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 13 C 0.01 0.40 3.60 86.31 0.31 0.71 16 14 C 0.13 4.30 0.88 -10.79 -0.01 4.29 16 15 C -0.13 -5.10 7.09 71.98 0.51 -4.59 16 16 C -0.20 -4.98 8.06 71.98 0.58 -4.40 16 17 O -0.31 -11.21 9.75 -92.42 -0.90 -12.11 16 18 C 0.13 3.92 5.99 22.51 0.13 4.05 16 19 C -0.18 -4.93 9.99 22.37 0.22 -4.71 16 20 C -0.08 -1.69 10.04 22.25 0.22 -1.47 16 21 C -0.17 -3.14 10.04 22.28 0.22 -2.92 16 22 C -0.09 -1.75 10.04 22.25 0.22 -1.53 16 23 C -0.23 -5.93 4.90 22.37 0.11 -5.82 16 24 H 0.06 1.78 5.65 -2.39 -0.01 1.76 16 25 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 27 H 0.05 2.48 7.07 -2.39 -0.02 2.46 16 28 H 0.02 0.85 8.01 -2.39 -0.02 0.83 16 29 H 0.05 2.63 3.96 -2.39 -0.01 2.62 16 30 H -0.05 -2.78 8.05 -2.39 -0.02 -2.80 16 31 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 32 H 0.04 1.36 7.77 -2.39 -0.02 1.34 16 33 H 0.10 3.23 3.00 -2.39 -0.01 3.23 16 34 H 0.06 2.17 8.09 -2.39 -0.02 2.15 16 35 H 0.07 2.64 7.15 -2.38 -0.02 2.62 16 36 H 0.06 2.82 6.18 -2.39 -0.01 2.81 16 37 H 0.09 2.18 4.35 -2.39 -0.01 2.17 16 38 H 0.08 1.89 8.01 -2.39 -0.02 1.87 16 39 H 0.07 1.74 8.04 -2.39 -0.02 1.72 16 40 H 0.12 3.27 8.06 -2.91 -0.02 3.25 16 41 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 42 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 43 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 44 H 0.15 3.62 3.44 -2.91 -0.01 3.61 16 Total: -1.00 -65.81 334.71 3.52 -62.30 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 0.98 Total: 20.25 kcal Atomic # 6 Polarization: -40.23 SS G_CDS: 4.71 Total: -35.52 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: -3.30 Total: -82.22 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: -0.90 Total: -12.11 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -65.81 3.52 -62.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602437076.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.705 kcal (2) G-P(sol) polarization free energy of solvation -65.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds