Wall clock time and date at job start Mon Mar 30 2020 02:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47293 * 2 1 4 4 C 1.36942 * 119.99763 * 97.36964 * 3 2 1 5 5 H 1.08006 * 119.99608 * 160.92823 * 4 3 2 6 6 C 1.38810 * 120.00163 * 340.93109 * 4 3 2 7 7 N 1.31615 * 119.99716 * 356.11838 * 6 4 3 8 8 Si 1.86795 * 119.99979 * 176.11800 * 6 4 3 9 9 H 1.48505 * 109.47361 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47234 * 119.99762 * 8 6 4 11 11 H 1.48501 * 109.47298 * 240.00024 * 8 6 4 12 12 C 1.46495 * 120.00411 * 277.37863 * 3 2 1 13 13 H 1.09002 * 109.46822 * 353.31418 * 12 3 2 14 14 C 1.53000 * 109.47146 * 233.31883 * 12 3 2 15 15 C 1.50698 * 109.47490 * 113.31848 * 12 3 2 16 16 C 1.38282 * 119.94305 * 29.06729 * 15 12 3 17 17 C 1.38126 * 120.05371 * 179.97438 * 16 15 12 18 18 C 1.50700 * 120.02745 * 180.02562 * 17 16 15 19 19 C 1.38757 * 119.94536 * 0.02562 * 17 16 15 20 20 O 1.35899 * 120.05577 * 180.02562 * 19 17 16 21 21 C 1.42899 * 116.99979 * 179.97438 * 20 19 17 22 22 C 1.38709 * 119.88602 * 359.97438 * 19 17 16 23 23 C 1.38167 * 119.94556 * 359.70567 * 22 19 17 24 24 C 1.50706 * 119.97256 * 180.31460 * 23 22 19 25 25 H 1.09001 * 109.46681 * 298.71782 * 1 2 3 26 26 H 1.08998 * 109.47511 * 58.71564 * 1 2 3 27 27 H 1.08998 * 109.47332 * 178.72003 * 1 2 3 28 28 H 1.08998 * 109.47487 * 120.00308 * 2 1 3 29 29 H 1.09000 * 109.47261 * 240.00674 * 2 1 3 30 30 H 0.97006 * 119.99956 * 179.97438 * 7 6 4 31 31 H 1.09006 * 109.47062 * 60.00070 * 14 12 3 32 32 H 1.09001 * 109.47136 * 179.97438 * 14 12 3 33 33 H 1.08998 * 109.47306 * 299.99763 * 14 12 3 34 34 H 1.07998 * 119.97726 * 0.02562 * 16 15 12 35 35 H 1.09001 * 109.47269 * 89.99908 * 18 17 16 36 36 H 1.09002 * 109.47029 * 209.99871 * 18 17 16 37 37 H 1.08999 * 109.47133 * 330.00363 * 18 17 16 38 38 H 1.08996 * 109.47586 * 300.00110 * 21 20 19 39 39 H 1.09003 * 109.46710 * 60.00199 * 21 20 19 40 40 H 1.09000 * 109.47305 * 179.97438 * 21 20 19 41 41 H 1.08002 * 120.02322 * 179.97438 * 22 19 17 42 42 H 1.09002 * 109.46966 * 270.25655 * 24 23 22 43 43 H 1.08998 * 109.46632 * 30.25321 * 24 23 22 44 44 H 1.09002 * 109.46812 * 150.25575 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3900 1.9760 1.1762 5 1 3.0241 2.8502 1.1624 6 6 1.9519 1.4553 2.3860 7 7 1.1180 0.4371 2.4008 8 14 2.5456 2.1998 3.9930 9 1 3.4698 3.3261 3.7053 10 1 1.3813 2.7010 4.7665 11 1 3.2575 1.1648 4.7850 12 6 2.1090 2.1262 -1.2581 13 1 1.8868 1.4599 -2.0917 14 6 3.5231 2.6882 -1.4174 15 6 1.1165 3.2602 -1.2431 16 6 0.7516 3.8422 -0.0430 17 6 -0.1575 4.8820 -0.0267 18 6 -0.5544 5.5162 1.2815 19 6 -0.7049 5.3422 -1.2158 20 8 -1.5991 6.3655 -1.2024 21 6 -2.1211 6.7874 -2.4639 22 6 -0.3371 4.7567 -2.4182 23 6 0.5776 3.7212 -2.4298 24 6 0.9830 3.0893 -3.7366 25 1 -0.3633 0.4938 0.9013 26 1 -0.3634 0.5336 -0.8782 27 1 -0.3634 -1.0274 -0.0230 28 1 1.8934 -0.5139 0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 0.8121 0.0730 3.2463 31 1 4.2409 1.8680 -1.4283 32 1 3.5906 3.2421 -2.3537 33 1 3.7453 3.3545 -0.5838 34 1 1.1782 3.4840 0.8822 35 1 0.1197 6.3435 1.5035 36 1 -1.5760 5.8893 1.2092 37 1 -0.4939 4.7746 2.0779 38 1 -1.3032 7.1216 -3.1022 39 1 -2.6369 5.9540 -2.9407 40 1 -2.8217 7.6083 -2.3110 41 1 -0.7621 5.1128 -3.3450 42 1 0.3112 2.2615 -3.9637 43 1 0.9263 3.8321 -4.5323 44 1 2.0046 2.7173 -3.6587 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602449427.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:41 Heat of formation + Delta-G solvation = -2.697466 kcal Electronic energy + Delta-G solvation = -23116.132546 eV Core-core repulsion = 20034.230328 eV Total energy + Delta-G solvation = -3081.902218 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.23437 -39.33203 -37.41260 -34.98498 -33.72353 -32.32882 -30.21933 -30.05890 -29.37671 -28.21072 -26.29631 -25.44990 -23.82411 -22.95185 -21.70462 -20.79977 -18.31336 -18.20629 -17.42629 -16.92071 -16.59415 -15.92927 -15.51862 -15.30850 -15.01572 -14.63690 -14.52775 -14.08459 -13.98885 -13.66730 -13.65581 -13.39337 -13.26008 -13.16231 -12.90135 -12.75855 -12.65050 -12.56449 -12.52308 -12.33169 -12.18362 -11.91022 -11.84917 -11.50578 -11.39624 -11.25500 -11.07019 -10.25105 -9.37588 -8.67997 -8.60193 -7.65346 -5.10791 0.57850 0.72911 1.47315 1.51825 1.57824 2.51613 2.55877 2.95734 3.41229 3.69187 3.98271 4.06584 4.20005 4.35365 4.43140 4.44341 4.47556 4.59930 4.70754 4.74763 4.75359 4.80577 4.83987 4.87612 4.90350 4.95661 4.98072 5.11439 5.14766 5.22120 5.26537 5.29219 5.37111 5.48737 5.55442 5.60701 5.70779 5.80603 5.93087 6.09686 6.18652 6.25792 6.53423 6.64623 7.32903 8.02877 8.44125 9.30914 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016523 B = 0.007268 C = 0.005944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.214865 B = 3851.673196 C = 4709.766617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.170 3.830 3 N -0.603 5.603 4 C -0.220 4.220 5 H 0.071 0.929 6 C -0.051 4.051 7 N -0.920 5.920 8 Si 0.946 3.054 9 H -0.272 1.272 10 H -0.298 1.298 11 H -0.296 1.296 12 C 0.207 3.793 13 H 0.070 0.930 14 C -0.140 4.140 15 C -0.126 4.126 16 C -0.084 4.084 17 C -0.157 4.157 18 C -0.093 4.093 19 C 0.106 3.894 20 O -0.335 6.335 21 C 0.021 3.979 22 C -0.214 4.214 23 C -0.067 4.067 24 C -0.110 4.110 25 H 0.054 0.946 26 H 0.009 0.991 27 H 0.028 0.972 28 H 0.073 0.927 29 H 0.013 0.987 30 H 0.242 0.758 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.038 0.962 34 H 0.144 0.856 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.048 0.952 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.118 0.882 41 H 0.148 0.852 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.829 8.721 -12.070 15.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.045 3.955 3 N -0.324 5.324 4 C -0.350 4.350 5 H 0.088 0.912 6 C -0.245 4.245 7 N -0.568 5.568 8 Si 0.776 3.224 9 H -0.196 1.196 10 H -0.225 1.225 11 H -0.223 1.223 12 C 0.100 3.900 13 H 0.088 0.912 14 C -0.199 4.199 15 C -0.128 4.128 16 C -0.102 4.102 17 C -0.157 4.157 18 C -0.150 4.150 19 C 0.062 3.938 20 O -0.249 6.249 21 C -0.074 4.074 22 C -0.232 4.232 23 C -0.067 4.067 24 C -0.166 4.166 25 H 0.073 0.927 26 H 0.028 0.972 27 H 0.047 0.953 28 H 0.091 0.909 29 H 0.031 0.969 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.057 0.943 34 H 0.161 0.839 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.136 0.864 41 H 0.165 0.835 42 H 0.090 0.910 43 H 0.102 0.898 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.935 8.743 -11.776 14.957 hybrid contribution -0.045 0.108 1.173 1.179 sum -2.980 8.851 -10.602 14.129 Atomic orbital electron populations 1.22142 0.99361 0.97883 0.99208 1.20743 0.92294 0.84708 0.97736 1.44343 1.75327 1.10240 1.02525 1.19234 1.21785 1.09565 0.84412 0.91163 1.25439 0.99364 0.99942 0.99804 1.70235 1.35976 1.26966 1.23666 0.85492 0.77229 0.77905 0.81729 1.19629 1.22544 1.22292 1.19378 0.92214 0.89903 0.88473 0.91164 1.22026 0.96626 1.00467 1.00746 1.20650 1.00773 0.99007 0.92381 1.21915 0.94743 0.92498 1.01001 1.19563 1.01559 1.00263 0.94343 1.20472 1.01506 0.99732 0.93264 1.18860 0.91538 0.89578 0.93854 1.86001 1.56449 1.48293 1.34202 1.23269 0.99270 1.00857 0.83971 1.21146 1.03838 1.01280 0.96937 1.19885 0.95705 0.95440 0.95702 1.20842 1.02153 1.00836 0.92764 0.92689 0.97229 0.95272 0.90866 0.96895 0.94784 0.92942 0.91353 0.94328 0.83928 0.91257 0.91303 0.93285 0.91876 0.92349 0.86371 0.83468 0.90963 0.89760 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.00 9.69 71.98 0.70 -5.30 16 2 C 0.17 8.17 5.53 86.38 0.48 8.64 16 3 N -0.60 -28.58 2.33 -682.21 -1.59 -30.18 16 4 C -0.22 -11.26 5.79 84.03 0.49 -10.78 16 5 H 0.07 3.61 6.26 -2.91 -0.02 3.59 16 6 C -0.05 -2.73 5.26 84.86 0.45 -2.28 16 7 N -0.92 -51.05 7.91 21.65 0.17 -50.88 16 8 Si 0.95 44.31 29.55 68.60 2.03 46.34 16 9 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 10 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 11 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 12 C 0.21 8.21 2.33 44.25 0.10 8.32 16 13 H 0.07 2.61 6.48 -2.39 -0.02 2.59 16 14 C -0.14 -4.94 8.88 71.98 0.64 -4.30 16 15 C -0.13 -4.99 5.03 -19.85 -0.10 -5.09 16 16 C -0.08 -3.69 8.76 22.25 0.19 -3.49 16 17 C -0.16 -6.24 5.89 -19.77 -0.12 -6.36 16 18 C -0.09 -3.36 9.79 71.24 0.70 -2.67 16 19 C 0.11 3.71 6.66 22.51 0.15 3.86 16 20 O -0.34 -10.12 9.54 -92.41 -0.88 -11.00 16 21 C 0.02 0.40 9.81 113.37 1.11 1.51 16 22 C -0.21 -6.60 8.69 22.37 0.19 -6.41 16 23 C -0.07 -2.19 5.88 -19.88 -0.12 -2.31 16 24 C -0.11 -2.69 9.19 71.24 0.65 -2.03 16 25 H 0.05 2.98 6.24 -2.39 -0.01 2.97 16 26 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.07 3.95 5.83 -2.39 -0.01 3.94 16 29 H 0.01 0.56 8.03 -2.39 -0.02 0.55 16 30 H 0.24 13.34 8.31 -92.70 -0.77 12.57 16 31 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.07 2.00 7.28 -2.39 -0.02 1.98 16 33 H 0.04 1.49 6.73 -2.39 -0.02 1.47 16 34 H 0.14 7.15 4.37 -2.91 -0.01 7.13 16 35 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.07 2.29 7.53 -2.39 -0.02 2.27 16 37 H 0.05 1.88 8.09 -2.39 -0.02 1.86 16 38 H 0.06 1.05 7.66 -2.39 -0.02 1.04 16 39 H 0.06 1.03 7.66 -2.39 -0.02 1.01 16 40 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.15 3.48 6.30 -2.91 -0.02 3.46 16 42 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.08 1.61 8.09 -2.39 -0.02 1.59 16 44 H 0.07 1.76 5.74 -2.39 -0.01 1.74 16 Total: -1.00 -60.25 337.31 6.23 -54.03 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 0.98 Total: 20.38 kcal Atomic # 6 Polarization: -34.21 SS G_CDS: 5.52 Total: -28.68 kcal Atomic # 7 Polarization: -79.64 SS G_CDS: -1.42 Total: -81.06 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: -0.88 Total: -11.00 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -60.25 6.23 -54.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602449427.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.329 kcal (2) G-P(sol) polarization free energy of solvation -60.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds