Wall clock time and date at job start Mon Mar 30 2020 02:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31808 * 119.11915 * 2 1 4 4 C 1.32325 * 120.81946 * 180.02562 * 3 2 1 5 5 C 1.38609 * 119.09909 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.80123 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.47504 * 220.00296 * 6 5 4 8 8 C 1.52999 * 109.47314 * 99.99629 * 6 5 4 9 9 N 1.46907 * 109.46978 * 339.99698 * 6 5 4 10 10 C 1.46895 * 111.00234 * 179.97438 * 9 6 5 11 11 C 1.50699 * 109.47004 * 200.37023 * 10 9 6 12 12 H 1.08001 * 120.00361 * 5.30415 * 11 10 9 13 13 C 1.37880 * 119.99981 * 185.30323 * 11 10 9 14 14 N 1.31519 * 119.99565 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00056 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47463 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47303 * 120.00070 * 15 13 11 18 18 H 1.48503 * 109.46946 * 239.99848 * 15 13 11 19 19 C 1.46901 * 111.00138 * 303.95887 * 9 6 5 20 20 C 1.52996 * 109.47318 * 166.36082 * 19 9 6 21 21 C 1.52997 * 109.46692 * 286.36208 * 19 9 6 22 22 C 1.38577 * 118.40226 * 0.27416 * 5 4 3 23 23 C 1.50701 * 120.45057 * 179.72796 * 22 5 4 24 24 N 1.31776 * 119.12464 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.47094 * 90.00211 * 1 2 3 26 26 H 1.09004 * 109.47066 * 209.99772 * 1 2 3 27 27 H 1.08992 * 109.47445 * 329.99817 * 1 2 3 28 28 H 1.07992 * 120.44713 * 180.02562 * 4 3 2 29 29 H 1.08994 * 109.47145 * 300.00724 * 8 6 5 30 30 H 1.09004 * 109.46797 * 60.00199 * 8 6 5 31 31 H 1.08994 * 109.47119 * 180.02562 * 8 6 5 32 32 H 1.08996 * 109.47027 * 80.36751 * 10 9 6 33 33 H 1.09000 * 109.46869 * 320.36819 * 10 9 6 34 34 H 0.96999 * 119.99415 * 179.97438 * 14 13 11 35 35 H 1.09002 * 109.46979 * 46.35571 * 19 9 6 36 36 H 1.08999 * 109.47471 * 67.03799 * 20 19 9 37 37 H 1.08999 * 109.47215 * 187.03786 * 20 19 9 38 38 H 1.09002 * 109.47129 * 307.04370 * 20 19 9 39 39 H 1.08999 * 109.47687 * 60.00189 * 21 19 9 40 40 H 1.09003 * 109.47330 * 180.02562 * 21 19 9 41 41 H 1.09002 * 109.46888 * 299.99419 * 21 19 9 42 42 H 1.08997 * 109.47300 * 89.99278 * 23 22 5 43 43 H 1.08994 * 109.47403 * 210.00141 * 23 22 5 44 44 H 1.09008 * 109.46732 * 329.99618 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1484 1.1515 0.0000 4 6 3.4711 1.1908 -0.0005 5 6 4.1808 0.0001 -0.0016 6 6 5.6879 0.0001 -0.0016 7 1 6.0512 -0.7865 -0.6629 8 6 6.1979 -0.2516 1.4187 9 7 6.1775 1.3020 -0.4742 10 6 7.6460 1.3391 -0.4871 11 6 8.1123 2.7721 -0.4812 12 1 7.3947 3.5732 -0.3827 13 6 9.4552 3.0606 -0.6015 14 7 10.3291 2.0850 -0.7210 15 14 10.0333 4.8368 -0.5935 16 1 8.8621 5.7380 -0.4474 17 1 10.9662 5.0486 0.5423 18 1 10.7313 5.1359 -1.8697 19 6 5.6307 1.6205 -1.8000 20 6 5.8757 3.0983 -2.1112 21 6 6.3201 0.7555 -2.8571 22 6 3.4713 -1.1902 -0.0079 23 6 4.1962 -2.5114 -0.0155 24 7 2.1484 -1.1511 -0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 3.9905 2.1376 -0.0001 29 1 5.8346 0.5350 2.0800 30 1 5.8346 -1.2176 1.7694 31 1 7.2879 -0.2512 1.4187 32 1 8.0141 0.8409 -1.3839 33 1 8.0300 0.8284 0.3959 34 1 11.2738 2.2880 -0.8060 35 1 4.5594 1.4200 -1.8088 36 1 6.9455 3.2730 -2.2259 37 1 5.3629 3.3648 -3.0354 38 1 5.4933 3.7099 -1.2940 39 1 6.1456 -0.2973 -2.6355 40 1 5.9148 0.9921 -3.8409 41 1 7.3915 0.9560 -2.8482 42 1 4.3714 -2.8356 1.0103 43 1 3.5906 -3.2551 -0.5332 44 1 5.1510 -2.3989 -0.5292 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602450554.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:39 Heat of formation + Delta-G solvation = 54.301675 kcal Electronic energy + Delta-G solvation = -22837.812697 eV Core-core repulsion = 19790.674898 eV Total energy + Delta-G solvation = -3047.137799 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.15426 -38.27919 -34.80744 -33.67740 -32.54851 -31.92169 -29.38561 -28.76131 -27.53121 -26.92230 -26.17307 -23.60623 -22.88552 -21.66730 -20.70650 -18.58212 -17.67643 -16.57864 -15.82911 -15.46437 -15.21138 -14.69118 -14.44232 -13.90772 -13.66750 -13.40665 -13.07703 -12.90825 -12.67368 -12.41820 -12.34055 -12.28376 -12.25409 -12.07625 -11.99665 -11.32983 -11.17151 -11.10103 -10.89107 -10.78015 -10.63680 -10.47101 -10.36380 -10.18312 -9.91960 -9.46359 -9.17793 -8.99893 -8.70243 -8.38401 -7.30154 -6.04219 -4.01125 1.09978 1.29530 3.29015 3.37827 3.41806 3.88271 4.03020 4.27804 4.38929 4.67427 4.74212 4.98613 5.28648 5.30878 5.32879 5.46428 5.51120 5.51943 5.56147 5.63422 5.69713 5.72659 5.83200 5.88709 5.95834 5.98611 6.07835 6.24206 6.27279 6.35456 6.50909 6.55748 6.63304 6.69196 6.71961 6.88582 7.18223 7.22270 7.37180 7.46098 7.82206 8.09411 8.13935 8.31123 8.51333 9.04314 9.59408 11.06141 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.025943 B = 0.005040 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.016940 B = 5554.240415 C = 5946.302843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.300 3.700 3 N -0.528 5.528 4 C 0.174 3.826 5 C -0.175 4.175 6 C 0.127 3.873 7 H 0.048 0.952 8 C -0.139 4.139 9 N -0.526 5.526 10 C 0.178 3.822 11 C -0.496 4.496 12 H 0.071 0.929 13 C 0.053 3.947 14 N -0.900 5.900 15 Si 0.890 3.110 16 H -0.271 1.271 17 H -0.286 1.286 18 H -0.286 1.286 19 C 0.083 3.917 20 C -0.144 4.144 21 C -0.184 4.184 22 C 0.170 3.830 23 C -0.107 4.107 24 N -0.525 5.525 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.182 0.818 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.013 0.987 33 H 0.032 0.968 34 H 0.259 0.741 35 H 0.056 0.944 36 H 0.094 0.906 37 H 0.030 0.970 38 H 0.053 0.947 39 H 0.039 0.961 40 H 0.045 0.955 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.975 -6.464 0.296 14.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.032 3.968 3 N -0.243 5.243 4 C 0.009 3.991 5 C -0.179 4.179 6 C 0.016 3.984 7 H 0.066 0.934 8 C -0.197 4.197 9 N -0.251 5.251 10 C 0.054 3.946 11 C -0.535 4.535 12 H 0.089 0.911 13 C -0.148 4.148 14 N -0.540 5.540 15 Si 0.719 3.281 16 H -0.196 1.196 17 H -0.212 1.212 18 H -0.213 1.213 19 C -0.026 4.026 20 C -0.201 4.201 21 C -0.243 4.243 22 C 0.024 3.976 23 C -0.164 4.164 24 N -0.241 5.241 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.101 0.899 28 H 0.199 0.801 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.031 0.969 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.113 0.887 37 H 0.049 0.951 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.945 -6.135 0.625 15.248 hybrid contribution 1.702 0.317 -0.624 1.840 sum -12.244 -5.818 0.001 13.556 Atomic orbital electron populations 1.20475 0.86277 1.03667 1.03415 1.23127 0.97906 0.83772 0.91967 1.68336 1.10367 1.30120 1.15454 1.23438 0.88386 0.99554 0.87752 1.21598 0.98833 0.94613 1.02863 1.20336 0.87552 0.93313 0.97159 0.93427 1.21874 1.02485 1.00465 0.94827 1.62450 1.13305 1.25528 1.23850 1.20031 0.79377 0.98082 0.97093 1.21326 0.91737 0.92376 1.48078 0.91077 1.24962 0.96860 0.97023 0.95907 1.69959 1.01913 1.31159 1.50955 0.86550 0.78821 0.85308 0.77442 1.19591 1.21186 1.21264 1.21614 0.96766 0.96284 0.87941 1.22105 1.05010 0.94316 0.98659 1.22461 1.03794 0.98999 0.99022 1.21473 0.89334 0.95644 0.91156 1.20809 0.99901 0.92237 1.03496 1.68034 1.09330 1.30657 1.16046 0.90118 0.90105 0.89920 0.80087 0.91994 0.93309 0.90618 0.96935 0.94986 0.93112 0.92587 0.88706 0.95077 0.92804 0.94214 0.93594 0.90080 0.89793 0.90393 0.89909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 10.32 36.01 0.37 -0.47 16 2 C 0.30 4.46 7.64 -157.20 -1.20 3.26 16 3 N -0.53 -8.59 10.33 -10.73 -0.11 -8.70 16 4 C 0.17 2.88 8.59 -17.20 -0.15 2.73 16 5 C -0.17 -2.78 4.32 -104.36 -0.45 -3.23 16 6 C 0.13 2.11 1.55 -68.86 -0.11 2.00 16 7 H 0.05 0.80 5.31 -51.93 -0.28 0.52 16 8 C -0.14 -2.21 8.98 37.16 0.33 -1.88 16 9 N -0.53 -10.17 3.53 -221.53 -0.78 -10.95 16 10 C 0.18 4.15 4.35 -4.98 -0.02 4.13 16 11 C -0.50 -12.68 6.71 -34.44 -0.23 -12.91 16 12 H 0.07 1.81 6.07 -52.49 -0.32 1.49 16 13 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 14 N -0.90 -25.28 13.29 55.43 0.74 -24.54 16 15 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 16 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 C 0.08 1.51 1.93 -67.72 -0.13 1.38 16 20 C -0.14 -2.69 7.85 37.16 0.29 -2.40 16 21 C -0.18 -3.30 8.44 37.16 0.31 -2.99 16 22 C 0.17 2.51 6.82 -82.24 -0.56 1.95 16 23 C -0.11 -1.24 9.23 36.01 0.33 -0.91 16 24 N -0.53 -8.03 10.27 -6.99 -0.07 -8.10 16 25 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.18 3.10 6.65 -52.49 -0.35 2.75 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.05 0.65 7.29 -51.93 -0.38 0.27 16 31 H 0.08 1.32 6.03 -51.93 -0.31 1.00 16 32 H 0.01 0.32 5.27 -51.93 -0.27 0.05 16 33 H 0.03 0.79 5.52 -51.93 -0.29 0.51 16 34 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 35 H 0.06 0.99 5.01 -51.93 -0.26 0.73 16 36 H 0.09 2.04 5.64 -51.93 -0.29 1.75 16 37 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.05 1.00 7.78 -51.93 -0.40 0.60 16 39 H 0.04 0.67 6.92 -51.93 -0.36 0.31 16 40 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 1.67 5.97 -51.93 -0.31 1.36 16 42 H 0.08 0.86 7.89 -51.93 -0.41 0.45 16 43 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.08 0.94 6.26 -51.92 -0.33 0.61 16 LS Contribution 333.41 15.07 5.02 5.02 Total: -1.00 -28.26 333.41 -8.18 -36.44 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -6.65 Total: 3.07 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: -1.31 Total: -8.01 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: -0.23 Total: -52.29 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.26 -8.18 -36.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602450554.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.746 kcal (2) G-P(sol) polarization free energy of solvation -28.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds