Wall clock time and date at job start Mon Mar 30 2020 02:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31808 * 119.11915 * 2 1 4 4 C 1.32325 * 120.81946 * 180.02562 * 3 2 1 5 5 C 1.38609 * 119.09909 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.80123 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.47504 * 220.00296 * 6 5 4 8 8 C 1.52999 * 109.47314 * 99.99629 * 6 5 4 9 9 N 1.46907 * 109.46978 * 339.99698 * 6 5 4 10 10 C 1.46895 * 111.00234 * 179.97438 * 9 6 5 11 11 C 1.50699 * 109.47004 * 200.37023 * 10 9 6 12 12 H 1.08001 * 120.00361 * 5.30415 * 11 10 9 13 13 C 1.37880 * 119.99981 * 185.30323 * 11 10 9 14 14 N 1.31519 * 119.99565 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00056 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47463 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47303 * 120.00070 * 15 13 11 18 18 H 1.48503 * 109.46946 * 239.99848 * 15 13 11 19 19 C 1.46901 * 111.00138 * 303.95887 * 9 6 5 20 20 C 1.52996 * 109.47318 * 166.36082 * 19 9 6 21 21 C 1.52997 * 109.46692 * 286.36208 * 19 9 6 22 22 C 1.38577 * 118.40226 * 0.27416 * 5 4 3 23 23 C 1.50701 * 120.45057 * 179.72796 * 22 5 4 24 24 N 1.31776 * 119.12464 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.47094 * 90.00211 * 1 2 3 26 26 H 1.09004 * 109.47066 * 209.99772 * 1 2 3 27 27 H 1.08992 * 109.47445 * 329.99817 * 1 2 3 28 28 H 1.07992 * 120.44713 * 180.02562 * 4 3 2 29 29 H 1.08994 * 109.47145 * 300.00724 * 8 6 5 30 30 H 1.09004 * 109.46797 * 60.00199 * 8 6 5 31 31 H 1.08994 * 109.47119 * 180.02562 * 8 6 5 32 32 H 1.08996 * 109.47027 * 80.36751 * 10 9 6 33 33 H 1.09000 * 109.46869 * 320.36819 * 10 9 6 34 34 H 0.96999 * 119.99415 * 179.97438 * 14 13 11 35 35 H 1.09002 * 109.46979 * 46.35571 * 19 9 6 36 36 H 1.08999 * 109.47471 * 67.03799 * 20 19 9 37 37 H 1.08999 * 109.47215 * 187.03786 * 20 19 9 38 38 H 1.09002 * 109.47129 * 307.04370 * 20 19 9 39 39 H 1.08999 * 109.47687 * 60.00189 * 21 19 9 40 40 H 1.09003 * 109.47330 * 180.02562 * 21 19 9 41 41 H 1.09002 * 109.46888 * 299.99419 * 21 19 9 42 42 H 1.08997 * 109.47300 * 89.99278 * 23 22 5 43 43 H 1.08994 * 109.47403 * 210.00141 * 23 22 5 44 44 H 1.09008 * 109.46732 * 329.99618 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1484 1.1515 0.0000 4 6 3.4711 1.1908 -0.0005 5 6 4.1808 0.0001 -0.0016 6 6 5.6879 0.0001 -0.0016 7 1 6.0512 -0.7865 -0.6629 8 6 6.1979 -0.2516 1.4187 9 7 6.1775 1.3020 -0.4742 10 6 7.6460 1.3391 -0.4871 11 6 8.1123 2.7721 -0.4812 12 1 7.3947 3.5732 -0.3827 13 6 9.4552 3.0606 -0.6015 14 7 10.3291 2.0850 -0.7210 15 14 10.0333 4.8368 -0.5935 16 1 8.8621 5.7380 -0.4474 17 1 10.9662 5.0486 0.5423 18 1 10.7313 5.1359 -1.8697 19 6 5.6307 1.6205 -1.8000 20 6 5.8757 3.0983 -2.1112 21 6 6.3201 0.7555 -2.8571 22 6 3.4713 -1.1902 -0.0079 23 6 4.1962 -2.5114 -0.0155 24 7 2.1484 -1.1511 -0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 3.9905 2.1376 -0.0001 29 1 5.8346 0.5350 2.0800 30 1 5.8346 -1.2176 1.7694 31 1 7.2879 -0.2512 1.4187 32 1 8.0141 0.8409 -1.3839 33 1 8.0300 0.8284 0.3959 34 1 11.2738 2.2880 -0.8060 35 1 4.5594 1.4200 -1.8088 36 1 6.9455 3.2730 -2.2259 37 1 5.3629 3.3648 -3.0354 38 1 5.4933 3.7099 -1.2940 39 1 6.1456 -0.2973 -2.6355 40 1 5.9148 0.9921 -3.8409 41 1 7.3915 0.9560 -2.8482 42 1 4.3714 -2.8356 1.0103 43 1 3.5906 -3.2551 -0.5332 44 1 5.1510 -2.3989 -0.5292 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602450554.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:38 Heat of formation + Delta-G solvation = 38.039524 kcal Electronic energy + Delta-G solvation = -22838.517876 eV Core-core repulsion = 19790.674898 eV Total energy + Delta-G solvation = -3047.842978 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.35270 -39.76120 -36.03994 -35.03813 -34.39550 -33.20440 -30.71174 -29.97798 -28.78566 -28.52073 -27.75562 -24.89537 -24.45030 -23.01391 -22.03783 -20.11349 -18.90622 -18.48683 -17.03151 -16.92470 -16.51834 -16.44424 -15.82295 -15.39036 -15.07916 -14.41256 -14.30620 -14.23952 -14.01280 -13.89561 -13.73193 -13.56643 -13.27849 -13.17466 -13.08707 -12.96037 -12.74669 -12.61838 -12.57359 -12.41838 -12.20311 -12.06121 -11.86159 -11.53155 -11.36931 -11.13628 -10.98931 -10.42997 -10.19525 -9.94369 -8.90939 -8.08358 -6.09866 -0.07146 0.09172 1.42189 1.45807 1.56155 2.46128 2.71733 2.99747 3.09460 3.24416 3.26656 3.60179 3.70889 4.02758 4.14024 4.23637 4.25926 4.40500 4.47624 4.52246 4.62211 4.64228 4.68050 4.72487 4.75512 4.83634 4.88440 4.93833 5.04641 5.08682 5.10461 5.14211 5.18048 5.27393 5.31700 5.43856 5.56983 5.61428 5.76326 5.82526 6.04527 6.23053 6.47124 6.72091 7.02362 7.14437 7.53969 9.01689 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.025943 B = 0.005040 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.016940 B = 5554.240415 C = 5946.302843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.293 3.707 3 N -0.543 5.543 4 C 0.165 3.835 5 C -0.184 4.184 6 C 0.131 3.869 7 H 0.051 0.949 8 C -0.133 4.133 9 N -0.530 5.530 10 C 0.193 3.807 11 C -0.494 4.494 12 H 0.069 0.931 13 C 0.004 3.996 14 N -0.935 5.935 15 Si 0.948 3.052 16 H -0.264 1.264 17 H -0.286 1.286 18 H -0.285 1.285 19 C 0.085 3.915 20 C -0.138 4.138 21 C -0.176 4.176 22 C 0.172 3.828 23 C -0.107 4.107 24 N -0.532 5.532 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.170 0.830 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.055 0.945 32 H -0.007 1.007 33 H 0.015 0.985 34 H 0.258 0.742 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.049 0.951 39 H 0.047 0.953 40 H 0.064 0.936 41 H 0.049 0.951 42 H 0.101 0.899 43 H 0.091 0.909 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.930 -7.037 0.204 16.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.026 3.974 3 N -0.258 5.258 4 C 0.000 4.000 5 C -0.189 4.189 6 C 0.021 3.979 7 H 0.069 0.931 8 C -0.190 4.190 9 N -0.255 5.255 10 C 0.068 3.932 11 C -0.533 4.533 12 H 0.087 0.913 13 C -0.193 4.193 14 N -0.577 5.577 15 Si 0.775 3.225 16 H -0.188 1.188 17 H -0.212 1.212 18 H -0.212 1.212 19 C -0.024 4.024 20 C -0.196 4.196 21 C -0.234 4.234 22 C 0.026 3.974 23 C -0.164 4.164 24 N -0.248 5.248 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.110 0.890 28 H 0.187 0.813 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.011 0.989 33 H 0.033 0.967 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.119 0.881 43 H 0.109 0.891 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.925 -6.699 0.535 17.285 hybrid contribution 2.193 0.448 -0.593 2.316 sum -13.732 -6.251 -0.059 15.088 Atomic orbital electron populations 1.20627 0.83415 1.04846 1.04711 1.23953 0.99681 0.83298 0.90443 1.68382 1.10106 1.30992 1.16368 1.23315 0.88896 0.99408 0.88366 1.21431 0.97882 0.95068 1.04478 1.20308 0.88349 0.91846 0.97348 0.93148 1.21813 1.01096 1.01753 0.94384 1.62321 1.10806 1.27593 1.24747 1.19686 0.81789 0.96464 0.95276 1.21607 0.91706 0.93462 1.46543 0.91285 1.25656 0.97210 1.00381 0.96081 1.70069 1.02045 1.32928 1.52643 0.85637 0.78340 0.81325 0.77173 1.18849 1.21236 1.21169 1.21628 0.97312 0.96003 0.87440 1.21994 1.03084 0.94762 0.99723 1.22348 1.01641 0.99448 0.99987 1.21939 0.89445 0.96422 0.89555 1.20916 0.99782 0.90866 1.04791 1.68186 1.09368 1.30697 1.16540 0.88588 0.88630 0.89030 0.81272 0.92974 0.90362 0.92612 0.98905 0.96675 0.93270 0.91284 0.91723 0.92751 0.93171 0.93367 0.91721 0.93223 0.88073 0.89059 0.89695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.43 10.32 71.24 0.74 -0.70 16 2 C 0.29 8.09 7.64 138.75 1.06 9.15 16 3 N -0.54 -16.90 10.33 -187.85 -1.94 -18.84 16 4 C 0.16 5.32 8.59 84.71 0.73 6.04 16 5 C -0.18 -5.60 4.32 -19.69 -0.09 -5.69 16 6 C 0.13 4.30 1.55 44.17 0.07 4.36 16 7 H 0.05 1.64 5.31 -2.39 -0.01 1.63 16 8 C -0.13 -4.17 8.98 71.98 0.65 -3.52 16 9 N -0.53 -20.60 3.53 -854.78 -3.02 -23.62 16 10 C 0.19 9.23 4.35 85.56 0.37 9.60 16 11 C -0.49 -25.76 6.71 25.60 0.17 -25.59 16 12 H 0.07 3.56 6.07 -2.91 -0.02 3.55 16 13 C 0.00 0.21 5.46 84.65 0.46 0.67 16 14 N -0.93 -53.79 13.29 21.45 0.28 -53.51 16 15 Si 0.95 43.22 29.54 68.60 2.03 45.24 16 16 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 17 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 18 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 19 C 0.08 3.05 1.93 44.91 0.09 3.14 16 20 C -0.14 -5.13 7.85 71.98 0.57 -4.56 16 21 C -0.18 -6.22 8.44 71.98 0.61 -5.61 16 22 C 0.17 4.72 6.82 42.56 0.29 5.01 16 23 C -0.11 -2.17 9.23 71.24 0.66 -1.51 16 24 N -0.53 -14.95 10.27 -176.03 -1.81 -16.75 16 25 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 27 H 0.09 1.52 8.14 -2.39 -0.02 1.51 16 28 H 0.17 5.78 6.65 -2.91 -0.02 5.76 16 29 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.08 1.94 7.29 -2.38 -0.02 1.93 16 31 H 0.05 1.97 6.03 -2.39 -0.01 1.95 16 32 H -0.01 -0.34 5.27 -2.39 -0.01 -0.36 16 33 H 0.02 0.78 5.52 -2.39 -0.01 0.77 16 34 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 35 H 0.07 2.36 5.01 -2.39 -0.01 2.35 16 36 H 0.06 2.80 5.64 -2.39 -0.01 2.79 16 37 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 38 H 0.05 1.86 7.78 -2.39 -0.02 1.84 16 39 H 0.05 1.59 6.92 -2.39 -0.02 1.57 16 40 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.05 2.08 5.97 -2.39 -0.01 2.07 16 42 H 0.10 1.74 7.89 -2.39 -0.02 1.73 16 43 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.08 1.71 6.26 -2.38 -0.01 1.70 16 Total: -1.00 -60.76 333.41 2.91 -57.86 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 1.00 Total: 18.82 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: 6.37 Total: -9.20 kcal Atomic # 7 Polarization: -106.23 SS G_CDS: -6.48 Total: -112.72 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -60.76 2.91 -57.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602450554.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.895 kcal (2) G-P(sol) polarization free energy of solvation -60.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds