Wall clock time and date at job start Mon Mar 30 2020 01:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47316 * 2 1 4 4 C 1.53000 * 109.46928 * 119.99560 * 2 1 3 5 5 C 1.50700 * 109.47407 * 295.00392 * 4 2 1 6 6 H 1.07996 * 120.00305 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99952 * 180.02562 * 5 4 2 8 8 N 1.31510 * 119.99801 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00093 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47229 * 89.99832 * 9 7 5 11 11 H 1.48501 * 109.47082 * 209.99947 * 9 7 5 12 12 H 1.48507 * 109.47272 * 329.99874 * 9 7 5 13 13 C 1.52997 * 109.47500 * 239.99707 * 2 1 3 14 14 N 1.46904 * 109.46847 * 63.28173 * 13 2 1 15 15 C 1.46899 * 110.99795 * 200.12172 * 14 13 2 16 16 H 1.09004 * 109.47308 * 299.99929 * 15 14 13 17 17 C 1.52996 * 109.47227 * 60.00241 * 15 14 13 18 18 C 1.50708 * 109.46979 * 180.02562 * 15 14 13 19 19 C 1.34511 * 125.79104 * 139.99757 * 18 15 14 20 20 C 1.41382 * 106.84124 * 179.97438 * 19 18 15 21 21 C 1.34516 * 106.83917 * 0.02562 * 20 19 18 22 22 O 1.34302 * 108.42379 * 359.73950 * 21 20 19 23 23 C 1.46906 * 111.00062 * 76.16906 * 14 13 2 24 24 C 1.52998 * 117.49632 * 359.92194 * 23 14 13 25 25 C 1.52998 * 117.49446 * 291.26404 * 23 14 13 26 26 H 1.08997 * 109.46932 * 300.00102 * 1 2 3 27 27 H 1.08998 * 109.46795 * 60.00192 * 1 2 3 28 28 H 1.08998 * 109.46730 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47337 * 55.00367 * 4 2 1 30 30 H 1.09002 * 109.47007 * 175.00198 * 4 2 1 31 31 H 0.97003 * 119.99661 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.46838 * 303.28723 * 13 2 1 33 33 H 1.08998 * 109.47543 * 183.27874 * 13 2 1 34 34 H 1.09002 * 109.47090 * 299.99596 * 17 15 14 35 35 H 1.08997 * 109.47395 * 60.00018 * 17 15 14 36 36 H 1.09003 * 109.47088 * 180.02562 * 17 15 14 37 37 H 1.07995 * 126.57710 * 0.04186 * 19 18 15 38 38 H 1.07998 * 126.58112 * 179.97438 * 20 19 18 39 39 H 1.08002 * 125.79003 * 180.02562 * 21 20 19 40 40 H 1.08992 * 115.54954 * 145.59711 * 23 14 13 41 41 H 1.09005 * 117.50412 * 0.02562 * 24 23 14 42 42 H 1.09004 * 117.50091 * 145.01931 * 24 23 14 43 43 H 1.08997 * 117.49990 * 214.97567 * 25 23 14 44 44 H 1.09006 * 117.50430 * 0.02562 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0571 2.4766 6 1 1.0805 0.9746 2.3757 7 6 1.9931 -0.4016 3.7284 8 7 1.6456 0.2779 4.7993 9 14 2.9635 -1.9882 3.9029 10 1 4.4170 -1.6847 3.8781 11 1 2.6162 -2.6417 5.1904 12 1 2.6288 -2.8994 2.7791 13 6 2.0401 -0.7213 -1.2491 14 7 1.6162 0.0155 -2.4473 15 6 1.6537 -0.8467 -3.6361 16 1 2.6701 -1.2093 -3.7901 17 6 0.7131 -2.0362 -3.4334 18 6 1.2141 -0.0580 -4.8427 19 6 1.7581 -0.1304 -6.0708 20 6 1.0422 0.7727 -6.8898 21 6 0.1039 1.3434 -6.1130 22 8 0.2092 0.8325 -4.8755 23 6 2.4364 1.2184 -2.6433 24 6 3.5399 1.4953 -1.6203 25 6 2.2742 2.3561 -1.6333 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6054 -1.7197 1.2953 30 1 3.1263 -0.7994 1.2057 31 1 1.8928 -0.0451 5.6800 32 1 1.6295 -1.7305 -1.2790 33 1 3.1285 -0.7725 -1.2203 34 1 1.0315 -2.6066 -2.5608 35 1 -0.3032 -1.6736 -3.2794 36 1 0.7413 -2.6761 -4.3153 37 1 2.5827 -0.7587 -6.3734 38 1 1.2159 0.9677 -7.9378 39 1 -0.6155 2.0832 -6.4318 40 1 2.6319 1.4902 -3.6805 41 1 3.6577 0.7848 -0.8021 42 1 4.4614 1.9497 -1.9845 43 1 2.3635 3.3765 -2.0060 44 1 1.5593 2.2120 -0.8232 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602455819.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:52 Heat of formation + Delta-G solvation = 37.752618 kcal Electronic energy + Delta-G solvation = -22476.717268 eV Core-core repulsion = 19396.569098 eV Total energy + Delta-G solvation = -3080.148171 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.43383 -40.61666 -36.49805 -36.09024 -34.24360 -33.75259 -31.39961 -29.35786 -29.32872 -27.36268 -24.70866 -23.53325 -23.16202 -22.53709 -21.78604 -20.77320 -20.55632 -18.84435 -18.25487 -17.57640 -16.96545 -16.37279 -16.03032 -15.85104 -15.34227 -15.09238 -14.86901 -14.39632 -14.22671 -13.81858 -13.61377 -13.47668 -13.44597 -13.18212 -12.95964 -12.83577 -12.74505 -12.44373 -12.31382 -12.10229 -11.97926 -11.85078 -11.60881 -11.29080 -11.22217 -10.99108 -10.77712 -10.73226 -10.68166 -9.31072 -9.04946 -8.23428 -6.25212 0.89147 1.36570 1.38592 1.50139 1.76743 2.20889 2.39440 2.67368 3.08943 3.12054 3.64272 3.99615 4.01445 4.07583 4.14141 4.17103 4.22041 4.31242 4.35279 4.41914 4.52457 4.63131 4.71720 4.77313 4.88225 4.91698 4.94122 4.97309 5.05209 5.08006 5.13005 5.17594 5.25071 5.31975 5.33400 5.43799 5.45951 5.59940 5.66783 5.75431 5.80332 6.09522 6.13267 6.39064 6.41968 6.82522 7.38016 8.93538 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030360 B = 0.004272 C = 0.004131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.056947 B = 6553.288849 C = 6777.097557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.083 4.083 3 H 0.074 0.926 4 C -0.004 4.004 5 C -0.513 4.513 6 H 0.032 0.968 7 C 0.001 3.999 8 N -0.955 5.955 9 Si 0.947 3.053 10 H -0.268 1.268 11 H -0.288 1.288 12 H -0.245 1.245 13 C 0.055 3.945 14 N -0.502 5.502 15 C 0.160 3.840 16 H 0.082 0.918 17 C -0.144 4.144 18 C -0.008 4.008 19 C -0.220 4.220 20 C -0.224 4.224 21 C -0.052 4.052 22 O -0.180 6.180 23 C 0.032 3.968 24 C -0.216 4.216 25 C -0.185 4.185 26 H 0.023 0.977 27 H 0.058 0.942 28 H 0.042 0.958 29 H 0.016 0.984 30 H 0.014 0.986 31 H 0.263 0.737 32 H 0.086 0.914 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.055 0.945 36 H 0.080 0.920 37 H 0.160 0.840 38 H 0.167 0.833 39 H 0.227 0.773 40 H 0.116 0.884 41 H 0.095 0.905 42 H 0.106 0.894 43 H 0.103 0.897 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.609 -2.370 -25.048 25.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.102 4.102 3 H 0.092 0.908 4 C -0.042 4.042 5 C -0.552 4.552 6 H 0.050 0.950 7 C -0.195 4.195 8 N -0.597 5.597 9 Si 0.770 3.230 10 H -0.194 1.194 11 H -0.214 1.214 12 H -0.169 1.169 13 C -0.072 4.072 14 N -0.225 5.225 15 C 0.052 3.948 16 H 0.099 0.901 17 C -0.201 4.201 18 C -0.059 4.059 19 C -0.239 4.239 20 C -0.243 4.243 21 C -0.119 4.119 22 O -0.075 6.075 23 C -0.077 4.077 24 C -0.254 4.254 25 C -0.223 4.223 26 H 0.043 0.957 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.035 0.965 30 H 0.032 0.968 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.177 0.823 38 H 0.184 0.816 39 H 0.243 0.757 40 H 0.133 0.867 41 H 0.113 0.887 42 H 0.124 0.876 43 H 0.121 0.879 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.928 -2.186 -24.571 24.685 hybrid contribution 1.053 -0.402 0.607 1.280 sum 1.981 -2.588 -23.964 24.185 Atomic orbital electron populations 1.21454 0.95592 1.00412 0.99580 1.21311 0.96189 1.00184 0.92489 0.90812 1.19549 0.95573 0.95814 0.93296 1.21422 1.34062 1.08464 0.91214 0.94972 1.25989 0.97114 1.00854 0.95533 1.70081 1.49285 1.41621 0.98687 0.85712 0.79171 0.80079 0.77996 1.19355 1.21387 1.16864 1.22417 0.98321 0.97671 0.88757 1.61876 1.52219 1.06004 1.02369 1.20249 0.98979 0.91033 0.84517 0.90061 1.21948 0.99320 0.95872 1.02997 1.22368 0.91238 0.95274 0.96989 1.21834 1.04678 1.04750 0.92661 1.22094 0.99122 1.00946 1.02109 1.24742 1.03373 1.02316 0.81518 1.84127 1.44978 1.45710 1.32703 1.22519 0.96870 0.93105 0.95205 1.23630 0.93904 1.04510 1.03369 1.23350 1.00438 0.96127 1.02385 0.95740 0.92308 0.93851 0.96531 0.96812 0.92791 0.89629 0.93505 0.90926 0.92593 0.90107 0.82281 0.81572 0.75682 0.86655 0.88670 0.87607 0.87879 0.89193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.44 8.84 71.98 0.64 -3.80 16 2 C -0.08 -3.23 1.38 -10.79 -0.01 -3.24 16 3 H 0.07 3.02 3.54 -2.38 -0.01 3.02 16 4 C 0.00 -0.21 3.52 29.85 0.10 -0.10 16 5 C -0.51 -29.67 8.96 25.60 0.23 -29.44 16 6 H 0.03 2.06 7.30 -2.91 -0.02 2.04 16 7 C 0.00 0.05 5.47 84.66 0.46 0.52 16 8 N -0.96 -60.89 13.96 21.45 0.30 -60.59 16 9 Si 0.95 44.68 27.47 68.60 1.88 46.56 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 11 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 12 H -0.25 -10.65 6.54 99.48 0.65 -10.00 16 13 C 0.06 1.68 3.81 86.30 0.33 2.01 16 14 N -0.50 -13.75 3.89 -850.26 -3.30 -17.06 16 15 C 0.16 3.60 2.53 44.17 0.11 3.71 16 16 H 0.08 1.62 8.13 -2.39 -0.02 1.60 16 17 C -0.14 -2.98 9.02 71.98 0.65 -2.33 16 18 C -0.01 -0.18 4.37 24.83 0.11 -0.07 16 19 C -0.22 -4.22 10.80 22.19 0.24 -3.98 16 20 C -0.22 -3.84 10.91 22.19 0.24 -3.60 16 21 C -0.05 -0.95 12.09 66.97 0.81 -0.14 16 22 O -0.18 -4.48 10.65 -2.54 -0.03 -4.51 16 23 C 0.03 0.87 5.72 44.91 0.26 1.12 16 24 C -0.22 -6.01 8.99 30.62 0.28 -5.74 16 25 C -0.19 -5.49 9.60 30.62 0.29 -5.19 16 26 H 0.02 1.08 6.95 -2.39 -0.02 1.07 16 27 H 0.06 2.14 7.70 -2.39 -0.02 2.12 16 28 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.02 0.76 7.20 -2.39 -0.02 0.74 16 30 H 0.01 0.62 7.57 -2.39 -0.02 0.60 16 31 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 32 H 0.09 2.43 5.53 -2.39 -0.01 2.42 16 33 H 0.05 1.39 6.17 -2.39 -0.01 1.38 16 34 H 0.07 1.47 6.04 -2.39 -0.01 1.46 16 35 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 38 H 0.17 1.99 8.06 -2.91 -0.02 1.96 16 39 H 0.23 2.42 8.06 -2.91 -0.02 2.40 16 40 H 0.12 2.91 6.84 -2.39 -0.02 2.89 16 41 H 0.10 3.05 4.92 -2.38 -0.01 3.04 16 42 H 0.11 2.51 8.14 -2.38 -0.02 2.50 16 43 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 44 H 0.09 3.18 5.56 -2.38 -0.01 3.17 16 Total: -1.00 -68.00 339.36 4.51 -63.49 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: 0.92 Total: 22.40 kcal Atomic # 6 Polarization: -55.02 SS G_CDS: 4.73 Total: -50.29 kcal Atomic # 7 Polarization: -74.64 SS G_CDS: -3.01 Total: -77.65 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: -0.03 Total: -4.51 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.88 Total: 46.56 kcal Total: -68.00 4.51 -63.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602455819.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.245 kcal (2) G-P(sol) polarization free energy of solvation -68.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds