Wall clock time and date at job start Mon Mar 30 2020 01:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47338 * 2 1 4 4 O 1.42904 * 109.47291 * 119.99455 * 2 1 3 5 5 C 1.36007 * 117.00312 * 154.98928 * 4 2 1 6 6 C 1.38512 * 120.07826 * 5.49848 * 5 4 2 7 7 C 1.38285 * 120.01904 * 180.02562 * 6 5 4 8 8 C 1.38262 * 120.17917 * 0.02562 * 7 6 5 9 9 C 1.38223 * 120.15676 * 359.97438 * 8 7 6 10 10 C 1.38718 * 119.98555 * 359.97438 * 9 8 7 11 11 N 1.39969 * 120.09205 * 179.97438 * 10 9 8 12 12 C 1.46497 * 119.99644 * 0.02562 * 11 10 9 13 13 C 1.53007 * 109.46760 * 179.97438 * 12 11 10 14 14 H 1.09004 * 109.46687 * 55.00509 * 13 12 11 15 15 C 1.52991 * 109.47169 * 295.00357 * 13 12 11 16 16 C 1.52998 * 109.46979 * 175.00086 * 13 12 11 17 17 C 1.50703 * 109.47044 * 185.00218 * 16 13 12 18 18 H 1.07990 * 120.00176 * 0.02562 * 17 16 13 19 19 C 1.37877 * 119.99748 * 180.02562 * 17 16 13 20 20 N 1.31514 * 120.00209 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99713 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47495 * 89.99828 * 21 19 17 23 23 H 1.48505 * 109.46611 * 209.99960 * 21 19 17 24 24 H 1.48497 * 109.47052 * 329.99293 * 21 19 17 25 25 H 1.08999 * 109.47113 * 300.00092 * 1 2 3 26 26 H 1.09000 * 109.46975 * 60.00028 * 1 2 3 27 27 H 1.09000 * 109.46823 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47522 * 239.99718 * 2 1 3 29 29 H 1.09000 * 109.47175 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.46541 * 299.99896 * 3 2 1 31 31 H 1.09004 * 109.47044 * 59.99426 * 3 2 1 32 32 H 1.08001 * 119.98869 * 359.97438 * 6 5 4 33 33 H 1.07993 * 119.91262 * 179.71812 * 7 6 5 34 34 H 1.08000 * 119.91723 * 180.02562 * 8 7 6 35 35 H 1.08005 * 120.00462 * 180.02562 * 9 8 7 36 36 H 0.96997 * 119.99948 * 180.02562 * 11 10 9 37 37 H 1.08998 * 109.47638 * 300.00120 * 12 11 10 38 38 H 1.09002 * 109.47118 * 60.00589 * 12 11 10 39 39 H 1.09004 * 109.47441 * 299.99691 * 15 13 12 40 40 H 1.08998 * 109.47615 * 60.00373 * 15 13 12 41 41 H 1.09009 * 109.47076 * 179.97438 * 15 13 12 42 42 H 1.09000 * 109.47525 * 305.00498 * 16 13 12 43 43 H 1.09003 * 109.46992 * 64.99917 * 16 13 12 44 44 H 0.96999 * 120.00348 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 3.2476 -1.2253 1.0979 6 6 4.0353 -1.0242 -0.0235 7 6 5.2969 -1.5862 -0.0925 8 6 5.7758 -2.3502 0.9556 9 6 4.9959 -2.5556 2.0782 10 6 3.7298 -1.9941 2.1549 11 7 2.9379 -2.2011 3.2904 12 6 3.4462 -3.0113 4.4001 13 6 2.3921 -3.0786 5.5070 14 1 1.4538 -3.4481 5.0932 15 6 2.1765 -1.6812 6.0915 16 6 2.8707 -4.0246 6.6101 17 6 1.7824 -4.1868 7.6399 18 1 0.8432 -3.6675 7.5194 19 6 1.9858 -4.9982 8.7359 20 7 3.1294 -5.6311 8.8824 21 14 0.6366 -5.1999 10.0119 22 1 -0.2322 -6.3444 9.6372 23 1 1.2469 -5.4562 11.3413 24 1 -0.1774 -3.9593 10.0719 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.6638 -0.4290 -0.8445 33 1 5.9079 -1.4321 -0.9696 34 1 6.7619 -2.7868 0.8974 35 1 5.3726 -3.1525 2.8957 36 1 2.0526 -1.8081 3.3425 37 1 3.6651 -4.0181 4.0445 38 1 4.3568 -2.5588 4.7930 39 1 3.1147 -1.3116 6.5053 40 1 1.8354 -1.0073 5.3057 41 1 1.4251 -1.7291 6.8799 42 1 3.1093 -4.9962 6.1775 43 1 3.7604 -3.6096 7.0839 44 1 3.2726 -6.2016 9.6536 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602486758.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:00 Heat of formation + Delta-G solvation = -52.217239 kcal Electronic energy + Delta-G solvation = -21352.763440 eV Core-core repulsion = 18268.713883 eV Total energy + Delta-G solvation = -3084.049556 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.24327 -39.00465 -37.84386 -35.53295 -34.18856 -33.66895 -30.92330 -29.98324 -28.62842 -28.13199 -27.09815 -25.00844 -23.91332 -22.62677 -21.58324 -20.82877 -19.19304 -18.54820 -17.75103 -16.94681 -16.48314 -16.39073 -16.01552 -15.87977 -15.37044 -15.18980 -14.63853 -14.44136 -14.31748 -14.14988 -13.84465 -13.52919 -13.38134 -13.17646 -13.10053 -12.81617 -12.74791 -12.63446 -12.50310 -12.28215 -12.08572 -11.95712 -11.71384 -11.64477 -11.50780 -11.16960 -11.03539 -10.88301 -10.54235 -9.38058 -8.18258 -8.03985 -6.27448 0.53592 0.74217 1.40487 1.41170 1.52065 2.30038 2.41221 2.64722 2.99378 3.15563 3.88639 3.95743 4.03742 4.05912 4.16830 4.19368 4.26386 4.31704 4.39764 4.59094 4.67637 4.71838 4.74734 4.77743 4.85808 4.87880 4.90116 4.92970 5.03859 5.19505 5.21409 5.29331 5.29955 5.35000 5.41686 5.50783 5.52886 5.75080 5.75459 5.85361 5.97047 6.20826 6.30694 6.69359 6.87241 6.94345 7.40809 8.93837 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022295 B = 0.003516 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.579063 B = 7961.063824 C = 8957.056536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.072 3.928 3 C -0.175 4.175 4 O -0.333 6.333 5 C 0.041 3.959 6 C -0.165 4.165 7 C -0.148 4.148 8 C -0.110 4.110 9 C -0.188 4.188 10 C 0.174 3.826 11 N -0.739 5.739 12 C 0.145 3.855 13 C -0.084 4.084 14 H 0.059 0.941 15 C -0.122 4.122 16 C 0.036 3.964 17 C -0.531 4.531 18 H 0.061 0.939 19 C -0.001 4.001 20 N -0.934 5.934 21 Si 0.961 3.039 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.263 1.263 25 H 0.059 0.941 26 H 0.100 0.900 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.056 0.944 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.140 0.860 35 H 0.121 0.879 36 H 0.402 0.598 37 H 0.047 0.953 38 H 0.051 0.949 39 H 0.042 0.958 40 H 0.057 0.943 41 H 0.049 0.951 42 H -0.009 1.009 43 H -0.005 1.005 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.320 12.778 -21.554 25.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.016 3.984 3 C -0.232 4.232 4 O -0.249 6.249 5 C -0.007 4.007 6 C -0.185 4.185 7 C -0.168 4.168 8 C -0.129 4.129 9 C -0.211 4.211 10 C 0.071 3.929 11 N -0.370 5.370 12 C 0.021 3.979 13 C -0.103 4.103 14 H 0.077 0.923 15 C -0.180 4.180 16 C -0.002 4.002 17 C -0.569 4.569 18 H 0.080 0.920 19 C -0.198 4.198 20 N -0.574 5.574 21 Si 0.786 3.214 22 H -0.200 1.200 23 H -0.209 1.209 24 H -0.188 1.188 25 H 0.078 0.922 26 H 0.118 0.882 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.111 0.889 31 H 0.075 0.925 32 H 0.165 0.835 33 H 0.163 0.837 34 H 0.158 0.842 35 H 0.139 0.861 36 H 0.237 0.763 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.010 0.990 43 H 0.014 0.986 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.291 12.562 -21.134 24.587 hybrid contribution -0.608 -0.386 1.021 1.249 sum -0.899 12.176 -20.114 23.529 Atomic orbital electron populations 1.21878 0.91800 1.02909 1.03802 1.22621 0.95915 0.92902 0.86932 1.22350 1.01751 0.95480 1.03614 1.86027 1.29281 1.69318 1.40234 1.18564 0.86962 0.99657 0.95521 1.21275 0.95746 1.03995 0.97446 1.21008 0.95899 0.99994 0.99930 1.21088 1.00077 0.98871 0.92842 1.20716 0.93511 1.05703 1.01210 1.17583 0.92146 0.96170 0.86986 1.44624 1.18949 1.57498 1.15916 1.21215 0.96740 0.93816 0.86142 1.21196 0.97504 0.96943 0.94694 0.92282 1.21604 1.01134 0.95165 1.00070 1.18944 0.95474 0.93094 0.92644 1.21608 1.01180 1.27181 1.06912 0.92048 1.25928 0.97915 0.95486 1.00483 1.70092 1.25660 1.31199 1.30476 0.85511 0.79068 0.78835 0.78033 1.19969 1.20914 1.18757 0.92158 0.88183 0.92505 0.90271 0.92445 0.88856 0.92467 0.83528 0.83657 0.84210 0.86134 0.76286 0.93519 0.93084 0.93881 0.92404 0.93222 0.99043 0.98646 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.56 71.98 0.69 -1.47 16 2 C 0.07 1.26 2.85 30.60 0.09 1.35 16 3 C -0.17 -2.56 9.17 71.98 0.66 -1.90 16 4 O -0.33 -8.59 9.05 -93.63 -0.85 -9.44 16 5 C 0.04 1.12 6.62 22.59 0.15 1.27 16 6 C -0.17 -3.62 8.25 22.35 0.18 -3.44 16 7 C -0.15 -3.05 10.04 22.29 0.22 -2.82 16 8 C -0.11 -2.56 10.04 22.27 0.22 -2.34 16 9 C -0.19 -5.41 9.31 22.38 0.21 -5.20 16 10 C 0.17 5.37 6.67 38.22 0.25 5.62 16 11 N -0.74 -24.07 5.46 -338.97 -1.85 -25.92 16 12 C 0.15 5.25 4.31 86.38 0.37 5.62 16 13 C -0.08 -3.47 2.37 -10.79 -0.03 -3.50 16 14 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 15 C -0.12 -4.62 8.87 71.98 0.64 -3.98 16 16 C 0.04 1.89 4.45 29.85 0.13 2.02 16 17 C -0.53 -29.89 8.41 25.60 0.22 -29.68 16 18 H 0.06 3.32 7.06 -2.92 -0.02 3.30 16 19 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 20 N -0.93 -56.94 13.29 21.45 0.28 -56.66 16 21 Si 0.96 44.45 29.54 68.60 2.03 46.47 16 22 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 23 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 24 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 25 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.08 1.22 6.31 -2.38 -0.02 1.20 16 29 H 0.06 0.91 6.92 -2.39 -0.02 0.89 16 30 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.15 2.41 5.43 -2.91 -0.02 2.40 16 33 H 0.15 2.09 8.06 -2.91 -0.02 2.06 16 34 H 0.14 2.56 8.06 -2.91 -0.02 2.53 16 35 H 0.12 3.54 6.74 -2.91 -0.02 3.52 16 36 H 0.40 12.87 7.02 -92.71 -0.65 12.22 16 37 H 0.05 1.74 7.95 -2.39 -0.02 1.72 16 38 H 0.05 1.86 7.95 -2.39 -0.02 1.84 16 39 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 40 H 0.06 1.87 7.18 -2.39 -0.02 1.85 16 41 H 0.05 1.99 6.95 -2.38 -0.02 1.97 16 42 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 43 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 44 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -65.10 352.24 4.41 -60.69 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: 0.32 Total: 22.87 kcal Atomic # 6 Polarization: -42.49 SS G_CDS: 4.48 Total: -38.02 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -1.57 Total: -82.58 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -0.85 Total: -9.44 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -65.10 4.41 -60.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602486758.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.476 kcal (2) G-P(sol) polarization free energy of solvation -65.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds