Wall clock time and date at job start Mon Mar 30 2020 02:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42896 * 109.47540 * 2 1 4 4 C 1.35897 * 117.00515 * 179.97438 * 3 2 1 5 5 C 1.38617 * 120.01378 * 0.23350 * 4 3 2 6 6 C 1.38790 * 119.87382 * 180.25079 * 5 4 3 7 7 N 1.39665 * 120.05228 * 179.78803 * 6 5 4 8 8 C 1.46496 * 120.00512 * 179.72057 * 7 6 5 9 9 C 1.52997 * 109.47484 * 180.02562 * 8 7 6 10 10 H 1.09002 * 109.47153 * 55.00066 * 9 8 7 11 11 C 1.53002 * 109.46817 * 295.00296 * 9 8 7 12 12 C 1.53000 * 109.47060 * 175.00385 * 9 8 7 13 13 C 1.50703 * 109.46801 * 184.99876 * 12 9 8 14 14 H 1.07998 * 120.00413 * 0.02562 * 13 12 9 15 15 C 1.37878 * 119.99680 * 179.97438 * 13 12 9 16 16 N 1.31512 * 120.00285 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99651 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47144 * 90.00302 * 17 15 13 19 19 H 1.48507 * 109.46867 * 209.99975 * 17 15 13 20 20 H 1.48496 * 109.47175 * 330.00050 * 17 15 13 21 21 C 1.38980 * 119.90443 * 359.51561 * 6 5 4 22 22 C 1.38113 * 120.03441 * 0.24896 * 21 6 5 23 23 C 1.38218 * 120.12986 * 359.97438 * 22 21 6 24 24 C 1.50697 * 119.95551 * 180.02562 * 23 22 21 25 25 H 1.09005 * 109.46867 * 60.00018 * 1 2 3 26 26 H 1.08993 * 109.47165 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47171 * 300.00551 * 1 2 3 28 28 H 1.09001 * 109.47171 * 239.99449 * 2 1 3 29 29 H 1.09005 * 109.46867 * 119.99982 * 2 1 3 30 30 H 1.08004 * 120.06681 * 0.02562 * 5 4 3 31 31 H 0.97005 * 119.99904 * 359.72679 * 7 6 5 32 32 H 1.09000 * 109.46667 * 60.00131 * 8 7 6 33 33 H 1.09008 * 109.47241 * 300.00488 * 8 7 6 34 34 H 1.08996 * 109.47407 * 60.00219 * 11 9 8 35 35 H 1.09000 * 109.46986 * 179.97438 * 11 9 8 36 36 H 1.09002 * 109.47075 * 299.99262 * 11 9 8 37 37 H 1.09002 * 109.47069 * 304.99600 * 12 9 8 38 38 H 1.08991 * 109.47625 * 64.99919 * 12 9 8 39 39 H 0.96998 * 119.99928 * 179.97438 * 16 15 13 40 40 H 1.07994 * 119.98138 * 180.27946 * 21 6 5 41 41 H 1.07996 * 119.93958 * 179.97438 * 22 21 6 42 42 H 1.09003 * 109.47003 * 89.99659 * 24 23 22 43 43 H 1.09002 * 109.47196 * 209.99488 * 24 23 22 44 44 H 1.08995 * 109.47231 * 329.99904 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5253 0.0005 5 6 4.1984 0.4262 -0.0038 6 6 5.5738 0.6114 0.0020 7 7 6.4283 -0.4933 0.0021 8 6 7.8800 -0.2966 0.0021 9 6 8.5791 -1.6575 0.0015 10 1 8.2208 -2.2498 -0.8405 11 6 8.2699 -2.3902 1.3087 12 6 10.0904 -1.4545 -0.1241 13 6 10.7687 -2.7945 -0.2481 14 1 10.1807 -3.7003 -0.2387 15 6 12.1399 -2.8640 -0.3746 16 7 12.8558 -1.7609 -0.3876 17 14 12.9805 -4.5250 -0.5291 18 1 13.0782 -4.8990 -1.9629 19 1 14.3433 -4.4463 0.0559 20 1 12.1885 -5.5500 0.1970 21 6 6.0998 1.8979 0.0020 22 6 5.2546 2.9902 0.0014 23 6 3.8846 2.8074 0.0003 24 6 2.9660 4.0021 -0.0009 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.7870 -0.5724 -0.0081 31 1 6.0605 -1.3910 0.0021 32 1 8.1710 0.2614 0.8920 33 1 8.1711 0.2614 -0.8880 34 1 7.1933 -2.5349 1.3982 35 1 8.7676 -3.3599 1.3081 36 1 8.6283 -1.7980 2.1507 37 1 10.3042 -0.8557 -1.0095 38 1 10.4627 -0.9394 0.7613 39 1 13.8205 -1.8099 -0.4763 40 1 7.1698 2.0434 0.0020 41 1 5.6649 3.9892 0.0019 42 1 2.7455 4.2898 -1.0289 43 1 2.0385 3.7478 0.5121 44 1 3.4496 4.8327 0.5130 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602493587.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:12 Heat of formation + Delta-G solvation = -58.596577 kcal Electronic energy + Delta-G solvation = -20910.636371 eV Core-core repulsion = 17826.310185 eV Total energy + Delta-G solvation = -3084.326185 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.20157 -39.24221 -37.78801 -35.72966 -34.19392 -32.59293 -31.89295 -30.64741 -28.96181 -27.65481 -26.21731 -24.94897 -24.65175 -22.50700 -21.87531 -20.84985 -19.01997 -18.56129 -17.52167 -17.02233 -16.73748 -16.47390 -16.08092 -15.91196 -15.57019 -14.79919 -14.59410 -14.40197 -14.36461 -14.17896 -13.94237 -13.52911 -13.40317 -13.34002 -12.96382 -12.92018 -12.81488 -12.62580 -12.55707 -12.29656 -12.15575 -11.97393 -11.80889 -11.76839 -11.56078 -11.18290 -11.04328 -10.56858 -10.54537 -9.30647 -8.19926 -8.18748 -6.27917 0.54469 0.70832 1.40443 1.40823 1.51602 2.29414 2.40186 2.55276 2.92593 3.15346 3.93411 4.03991 4.07686 4.12446 4.16346 4.19966 4.31221 4.36540 4.39747 4.46647 4.62151 4.68915 4.74588 4.85130 4.88639 4.91803 4.92973 4.95645 4.97054 5.14809 5.21095 5.25997 5.31059 5.37111 5.43449 5.50866 5.52783 5.70964 5.75161 5.85325 5.86406 6.23513 6.35439 6.54063 6.86027 6.89125 7.40550 8.93316 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029781 B = 0.002933 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.966371 B = 9545.713016 C =10323.999915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.045 3.955 3 O -0.323 6.323 4 C 0.163 3.837 5 C -0.291 4.291 6 C 0.240 3.760 7 N -0.735 5.735 8 C 0.142 3.858 9 C -0.085 4.085 10 H 0.063 0.937 11 C -0.124 4.124 12 C 0.034 3.966 13 C -0.530 4.530 14 H 0.063 0.937 15 C -0.001 4.001 16 N -0.934 5.934 17 Si 0.960 3.040 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.263 1.263 21 C -0.247 4.247 22 C -0.037 4.037 23 C -0.197 4.197 24 C -0.088 4.088 25 H 0.064 0.936 26 H 0.097 0.903 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.136 0.864 31 H 0.403 0.597 32 H 0.053 0.947 33 H 0.048 0.952 34 H 0.062 0.938 35 H 0.048 0.952 36 H 0.041 0.959 37 H -0.009 1.009 38 H -0.006 1.006 39 H 0.262 0.738 40 H 0.118 0.882 41 H 0.146 0.854 42 H 0.063 0.937 43 H 0.060 0.940 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.375 5.809 1.469 24.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.029 4.029 3 O -0.237 6.237 4 C 0.116 3.884 5 C -0.314 4.314 6 C 0.134 3.866 7 N -0.364 5.364 8 C 0.018 3.982 9 C -0.103 4.103 10 H 0.081 0.919 11 C -0.182 4.182 12 C -0.004 4.004 13 C -0.568 4.568 14 H 0.081 0.919 15 C -0.199 4.199 16 N -0.575 5.575 17 Si 0.785 3.215 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.187 1.187 21 C -0.270 4.270 22 C -0.056 4.056 23 C -0.200 4.200 24 C -0.145 4.145 25 H 0.083 0.917 26 H 0.115 0.885 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.154 0.846 31 H 0.239 0.761 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.009 0.991 38 H 0.013 0.987 39 H 0.071 0.929 40 H 0.136 0.864 41 H 0.164 0.836 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -23.161 6.037 1.465 23.979 hybrid contribution 1.141 -1.296 -0.167 1.735 sum -22.020 4.741 1.298 22.562 Atomic orbital electron populations 1.21785 0.91219 1.04046 1.03291 1.23002 0.96959 0.81168 1.01818 1.86031 1.18625 1.30667 1.88349 1.18618 0.82140 0.93379 0.94215 1.20646 0.91844 0.98990 1.19970 1.17748 0.89410 0.87989 0.91417 1.44775 1.04319 1.06248 1.81015 1.21260 0.79280 0.97517 1.00147 1.21204 0.95996 0.94582 0.98556 0.91888 1.21632 1.00234 1.00204 0.96108 1.18959 0.90715 0.95793 0.94894 1.21614 0.92213 0.93778 1.49160 0.91898 1.25932 0.98622 1.00179 0.95163 1.70092 1.06440 1.29215 1.51748 0.85521 0.77690 0.79834 0.78458 1.20015 1.21046 1.18673 1.20755 1.00217 0.91416 1.14642 1.20833 0.91439 0.98934 0.94358 1.19290 0.94506 0.93005 1.13162 1.20435 0.97793 0.94300 1.01970 0.91691 0.88483 0.91660 0.91784 0.91728 0.84617 0.76090 0.92902 0.93374 0.91866 0.93256 0.93985 0.99089 0.98714 0.92909 0.86404 0.83635 0.91803 0.92140 0.90870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 10.28 71.98 0.74 -0.95 16 2 C 0.05 0.75 5.46 71.98 0.39 1.14 16 3 O -0.32 -7.38 9.17 -92.39 -0.85 -8.23 16 4 C 0.16 4.18 6.66 22.49 0.15 4.33 16 5 C -0.29 -7.51 8.88 22.49 0.20 -7.31 16 6 C 0.24 6.86 6.65 38.20 0.25 7.12 16 7 N -0.73 -21.05 5.46 -339.47 -1.85 -22.91 16 8 C 0.14 4.78 4.30 86.38 0.37 5.16 16 9 C -0.08 -3.25 2.37 -10.79 -0.03 -3.28 16 10 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 11 C -0.12 -4.34 8.88 71.98 0.64 -3.70 16 12 C 0.03 1.73 4.45 29.85 0.13 1.86 16 13 C -0.53 -29.10 8.41 25.60 0.22 -28.89 16 14 H 0.06 3.30 7.06 -2.91 -0.02 3.28 16 15 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 16 N -0.93 -56.38 13.29 21.45 0.28 -56.10 16 17 Si 0.96 43.75 29.54 68.60 2.03 45.77 16 18 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 20 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 21 C -0.25 -7.04 9.31 22.42 0.21 -6.83 16 22 C -0.04 -0.92 9.69 22.24 0.22 -0.70 16 23 C -0.20 -4.86 5.90 -19.74 -0.12 -4.98 16 24 C -0.09 -1.71 9.79 71.23 0.70 -1.01 16 25 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 26 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 1.01 7.65 -2.39 -0.02 0.99 16 29 H 0.06 1.01 7.67 -2.38 -0.02 0.99 16 30 H 0.14 2.97 6.30 -2.91 -0.02 2.96 16 31 H 0.40 10.28 7.66 -92.70 -0.71 9.57 16 32 H 0.05 1.82 7.95 -2.39 -0.02 1.80 16 33 H 0.05 1.70 7.95 -2.38 -0.02 1.68 16 34 H 0.06 1.78 7.18 -2.39 -0.02 1.76 16 35 H 0.05 1.86 6.95 -2.39 -0.02 1.84 16 36 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 37 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 38 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 39 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 40 H 0.12 3.41 6.73 -2.91 -0.02 3.39 16 41 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 42 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.06 1.18 7.52 -2.39 -0.02 1.16 16 44 H 0.07 1.17 8.08 -2.39 -0.02 1.15 16 Total: -1.00 -63.90 355.45 4.40 -59.50 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: 0.26 Total: 19.62 kcal Atomic # 6 Polarization: -42.20 SS G_CDS: 4.54 Total: -37.67 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -1.57 Total: -79.00 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: -0.85 Total: -8.23 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -63.90 4.40 -59.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602493587.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.902 kcal (2) G-P(sol) polarization free energy of solvation -63.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds