Wall clock time and date at job start Mon Mar 30 2020 01:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.50699 * 109.46785 * 179.97438 * 3 2 1 5 5 C 1.38236 * 120.00113 * 269.72136 * 4 3 2 6 6 C 1.38231 * 120.00269 * 179.76764 * 5 4 3 7 7 C 1.38238 * 119.99823 * 0.51001 * 6 5 4 8 8 C 1.50700 * 120.00151 * 179.72355 * 7 6 5 9 9 N 1.46902 * 109.47271 * 270.02459 * 8 7 6 10 10 C 1.46895 * 111.00286 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.47272 * 179.97438 * 10 9 8 12 12 H 1.08996 * 109.46751 * 54.99913 * 11 10 9 13 13 C 1.52999 * 109.47003 * 294.99655 * 11 10 9 14 14 C 1.52996 * 109.46960 * 174.99976 * 11 10 9 15 15 C 1.50701 * 109.47306 * 184.99968 * 14 11 10 16 16 H 1.08002 * 119.99290 * 0.02562 * 15 14 11 17 17 C 1.37870 * 120.00635 * 180.02562 * 15 14 11 18 18 N 1.31514 * 120.00277 * 180.02562 * 17 15 14 19 19 Si 1.86806 * 119.99678 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46945 * 90.00134 * 19 17 15 21 21 H 1.48504 * 109.46943 * 209.99981 * 19 17 15 22 22 H 1.48496 * 109.47127 * 330.00073 * 19 17 15 23 23 C 1.38239 * 119.99835 * 359.74955 * 7 6 5 24 24 C 1.38231 * 120.00122 * 359.97438 * 23 7 6 25 25 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 26 26 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 28 28 H 1.08997 * 109.47171 * 299.99768 * 3 2 1 29 29 H 1.08997 * 109.47442 * 59.99964 * 3 2 1 30 30 H 1.08008 * 119.99692 * 0.02562 * 5 4 3 31 31 H 1.08003 * 120.00360 * 180.23514 * 6 5 4 32 32 H 1.08998 * 109.47346 * 30.02226 * 8 7 6 33 33 H 1.08998 * 109.47249 * 150.02131 * 8 7 6 34 34 H 1.00900 * 111.00001 * 56.04187 * 9 8 7 35 35 H 1.09002 * 109.47109 * 300.00262 * 10 9 8 36 36 H 1.08997 * 109.47016 * 59.99704 * 10 9 8 37 37 H 1.09005 * 109.46750 * 60.00722 * 13 11 10 38 38 H 1.08996 * 109.46939 * 179.97438 * 13 11 10 39 39 H 1.08993 * 109.47779 * 300.00226 * 13 11 10 40 40 H 1.08999 * 109.47159 * 304.99931 * 14 11 10 41 41 H 1.09007 * 109.47431 * 65.00011 * 14 11 10 42 42 H 0.97004 * 119.99854 * 180.02562 * 18 17 15 43 43 H 1.08000 * 119.99792 * 179.97438 * 23 7 6 44 44 H 1.08001 * 120.00020 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.2015 1.1379 1.1981 6 6 5.5791 1.0239 1.1987 7 6 6.2687 0.9690 0.0018 8 6 7.7710 0.8510 0.0025 9 7 8.3677 2.1934 0.0025 10 6 9.8347 2.1175 0.0037 11 6 10.4186 3.5317 0.0031 12 1 10.0117 4.0931 0.8441 13 6 10.0508 4.2347 -1.3052 14 6 11.9413 3.4548 0.1301 15 6 12.5062 4.8465 0.2529 16 1 11.8450 5.7004 0.2420 17 6 13.8668 5.0298 0.3793 18 7 14.3596 6.2443 0.4870 19 14 15.0102 3.5527 0.3990 20 1 15.4327 3.2352 -0.9889 21 1 16.2067 3.8639 1.2217 22 1 14.3003 2.3848 0.9797 23 6 5.5801 1.0230 -1.1956 24 6 4.2020 1.1313 -1.1962 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 1.6886 1.8464 0.8899 30 1 3.6631 1.1848 2.1332 31 1 6.1171 0.9821 2.1343 32 1 8.0927 0.3105 0.8927 33 1 8.0934 0.3101 -0.8873 34 1 8.0334 2.7377 0.7836 35 1 10.1703 1.5858 0.8941 36 1 10.1717 1.5853 -0.8858 37 1 8.9659 4.2895 -1.3956 38 1 10.4664 5.2423 -1.3054 39 1 10.4576 3.6733 -2.1462 40 1 12.2033 2.8768 1.0163 41 1 12.3558 2.9713 -0.7546 42 1 15.3169 6.3732 0.5756 43 1 6.1188 0.9806 -2.1307 44 1 3.6641 1.1739 -2.1318 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602504632.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:34 Heat of formation + Delta-G solvation = -58.600057 kcal Electronic energy + Delta-G solvation = -20358.895953 eV Core-core repulsion = 17274.569617 eV Total energy + Delta-G solvation = -3084.326336 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.54094 -38.76155 -38.13437 -35.82435 -34.25932 -32.65453 -31.83559 -29.68020 -28.65888 -27.19639 -26.18863 -24.65371 -23.67909 -23.42948 -21.71268 -20.72605 -18.92633 -17.57149 -17.27946 -17.10555 -16.58443 -16.52361 -16.19988 -15.69082 -15.59813 -15.32527 -14.97654 -14.84215 -14.42323 -14.27594 -13.65226 -13.50387 -13.33548 -13.25527 -12.99614 -12.89792 -12.77351 -12.47254 -12.29053 -12.18452 -11.91761 -11.84532 -11.70061 -11.45403 -11.17855 -11.02988 -10.73133 -10.65447 -9.81240 -9.67417 -9.26597 -8.25313 -6.27661 0.28440 0.52166 1.36629 1.38074 1.49864 2.38284 2.59077 3.09762 3.17139 3.46647 3.83605 3.88074 4.02035 4.14077 4.14936 4.18765 4.32058 4.41344 4.49137 4.52439 4.53705 4.60075 4.62352 4.69638 4.81825 4.87163 4.88632 4.92067 4.96681 5.08432 5.10763 5.18302 5.40581 5.42372 5.46249 5.56037 5.65110 5.70079 5.72544 5.74042 6.04404 6.12052 6.20938 6.35571 6.46932 6.80050 7.35722 8.91398 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.049585 B = 0.002394 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.547624 B =11694.296819 C =11821.960956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.413 6.413 3 C 0.103 3.897 4 C -0.107 4.107 5 C -0.107 4.107 6 C -0.124 4.124 7 C -0.081 4.081 8 C 0.099 3.901 9 N -0.683 5.683 10 C 0.074 3.926 11 C -0.070 4.070 12 H 0.049 0.951 13 C -0.116 4.116 14 C -0.007 4.007 15 C -0.518 4.518 16 H 0.034 0.966 17 C -0.001 4.001 18 N -0.954 5.954 19 Si 0.949 3.051 20 H -0.268 1.268 21 H -0.286 1.286 22 H -0.246 1.246 23 C -0.111 4.111 24 C -0.108 4.108 25 H 0.052 0.948 26 H 0.094 0.906 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.136 0.864 31 H 0.132 0.868 32 H 0.043 0.957 33 H 0.082 0.918 34 H 0.342 0.658 35 H 0.030 0.970 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.026 0.974 39 H 0.044 0.956 40 H 0.017 0.983 41 H 0.017 0.983 42 H 0.264 0.736 43 H 0.130 0.870 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.742 -15.334 -0.878 30.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.333 6.333 3 C 0.027 3.973 4 C -0.107 4.107 5 C -0.125 4.125 6 C -0.143 4.143 7 C -0.081 4.081 8 C -0.029 4.029 9 N -0.314 5.314 10 C -0.055 4.055 11 C -0.089 4.089 12 H 0.067 0.933 13 C -0.173 4.173 14 C -0.045 4.045 15 C -0.557 4.557 16 H 0.052 0.948 17 C -0.197 4.197 18 N -0.595 5.595 19 Si 0.773 3.227 20 H -0.193 1.193 21 H -0.212 1.212 22 H -0.170 1.170 23 C -0.129 4.129 24 C -0.126 4.126 25 H 0.070 0.930 26 H 0.112 0.888 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.154 0.846 31 H 0.150 0.850 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.159 0.841 35 H 0.048 0.952 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.045 0.955 39 H 0.063 0.937 40 H 0.035 0.965 41 H 0.036 0.964 42 H 0.073 0.927 43 H 0.148 0.852 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -26.523 -15.346 -1.546 30.681 hybrid contribution 0.944 0.061 0.970 1.355 sum -25.579 -15.285 -0.576 29.803 Atomic orbital electron populations 1.22944 0.79369 1.03800 1.01061 1.87933 1.21476 1.28266 1.95630 1.21403 0.88962 0.84879 1.02046 1.19836 0.94956 1.02197 0.93745 1.21217 0.94211 0.98988 0.98109 1.21240 0.94514 1.00509 0.98000 1.19924 0.95161 0.99412 0.93617 1.20891 0.89835 0.90464 1.01755 1.60495 1.06229 1.14349 1.50365 1.21931 0.86935 0.96219 1.00369 1.20886 0.94841 0.95145 0.98025 0.93278 1.21496 1.00429 0.98962 0.96415 1.19573 0.93855 0.94890 0.96176 1.21460 0.92352 0.93179 1.48660 0.94800 1.26028 1.00338 0.98759 0.94583 1.70079 1.13391 1.23330 1.52736 0.85670 0.77993 0.80204 0.78825 1.19320 1.21234 1.16995 1.21197 0.94199 0.99366 0.98167 1.21248 0.94245 0.98979 0.98145 0.92964 0.88752 0.92951 0.91277 0.91251 0.84640 0.85048 0.93838 0.89913 0.84055 0.95222 0.90896 0.91766 0.95522 0.93679 0.96517 0.96423 0.92712 0.85174 0.84707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 11.01 113.37 1.25 1.50 16 2 O -0.41 -7.36 10.69 -148.98 -1.59 -8.95 16 3 C 0.10 1.56 6.06 71.24 0.43 1.99 16 4 C -0.11 -2.04 5.51 -19.87 -0.11 -2.15 16 5 C -0.11 -2.02 9.70 22.27 0.22 -1.81 16 6 C -0.12 -2.47 9.70 22.27 0.22 -2.25 16 7 C -0.08 -1.72 5.39 -19.86 -0.11 -1.83 16 8 C 0.10 2.15 5.81 85.56 0.50 2.65 16 9 N -0.68 -17.78 5.94 -517.94 -3.08 -20.86 16 10 C 0.07 2.25 5.07 86.30 0.44 2.69 16 11 C -0.07 -2.71 2.48 -10.79 -0.03 -2.73 16 12 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 13 C -0.12 -4.43 8.89 71.98 0.64 -3.79 16 14 C -0.01 -0.33 3.52 29.85 0.10 -0.22 16 15 C -0.52 -30.06 8.96 25.60 0.23 -29.83 16 16 H 0.03 2.17 7.30 -2.91 -0.02 2.15 16 17 C 0.00 -0.07 5.47 84.65 0.46 0.40 16 18 N -0.95 -60.74 13.96 21.44 0.30 -60.44 16 19 Si 0.95 44.82 27.47 68.60 1.88 46.71 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 22 H -0.25 -10.74 6.54 99.48 0.65 -10.09 16 23 C -0.11 -2.31 9.70 22.27 0.22 -2.09 16 24 C -0.11 -2.10 9.70 22.27 0.22 -1.88 16 25 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.07 0.86 8.09 -2.39 -0.02 0.84 16 29 H 0.07 0.85 8.08 -2.39 -0.02 0.83 16 30 H 0.14 2.04 8.06 -2.91 -0.02 2.01 16 31 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 32 H 0.04 0.89 8.09 -2.39 -0.02 0.87 16 33 H 0.08 1.74 8.09 -2.39 -0.02 1.72 16 34 H 0.34 8.76 8.72 -89.69 -0.78 7.98 16 35 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.06 2.18 7.75 -2.38 -0.02 2.17 16 38 H 0.03 1.16 6.95 -2.39 -0.02 1.14 16 39 H 0.04 1.64 8.14 -2.39 -0.02 1.63 16 40 H 0.02 0.76 7.20 -2.39 -0.02 0.75 16 41 H 0.02 0.80 7.57 -2.38 -0.02 0.78 16 42 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 43 H 0.13 2.49 8.06 -2.91 -0.02 2.46 16 44 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -68.32 361.17 2.30 -66.02 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 0.11 Total: 16.89 kcal Atomic # 6 Polarization: -44.04 SS G_CDS: 4.67 Total: -39.37 kcal Atomic # 7 Polarization: -78.52 SS G_CDS: -2.78 Total: -81.30 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -1.59 Total: -8.95 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.88 Total: 46.71 kcal Total: -68.32 2.30 -66.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602504632.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.418 kcal (2) G-P(sol) polarization free energy of solvation -68.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds