Wall clock time and date at job start Mon Mar 30 2020 01:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 C 1.50704 * 119.97113 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.46806 * 269.97831 * 8 7 6 10 10 N 1.46905 * 109.46731 * 180.02562 * 9 8 7 11 11 C 1.46901 * 111.00097 * 180.02562 * 10 9 8 12 12 C 1.52996 * 109.47086 * 179.97438 * 11 10 9 13 13 H 1.08994 * 109.47056 * 304.99582 * 12 11 10 14 14 C 1.53002 * 109.47282 * 65.00208 * 12 11 10 15 15 C 1.53003 * 109.46677 * 184.99823 * 12 11 10 16 16 C 1.50704 * 109.47016 * 174.99935 * 15 12 11 17 17 H 1.08007 * 119.99757 * 0.02562 * 16 15 12 18 18 C 1.37878 * 120.00293 * 179.97438 * 16 15 12 19 19 N 1.31511 * 119.99820 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00084 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46815 * 90.00186 * 20 18 16 22 22 H 1.48495 * 109.47308 * 209.99924 * 20 18 16 23 23 H 1.48501 * 109.47224 * 330.00638 * 20 18 16 24 24 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 25 25 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 26 26 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 27 27 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 28 28 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 29 29 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 30 30 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 31 31 H 1.09003 * 109.47240 * 29.97765 * 8 7 6 32 32 H 1.09001 * 109.47227 * 149.97786 * 8 7 6 33 33 H 1.08996 * 109.47562 * 299.99451 * 9 8 7 34 34 H 1.08999 * 109.47554 * 60.00698 * 9 8 7 35 35 H 1.00895 * 110.99938 * 56.04605 * 10 9 8 36 36 H 1.08997 * 109.46875 * 299.99809 * 11 10 9 37 37 H 1.08995 * 109.47066 * 59.99599 * 11 10 9 38 38 H 1.08998 * 109.46432 * 299.99934 * 14 12 11 39 39 H 1.08998 * 109.46880 * 59.99618 * 14 12 11 40 40 H 1.08999 * 109.47343 * 179.97438 * 14 12 11 41 41 H 1.08995 * 109.47357 * 294.99732 * 15 12 11 42 42 H 1.08996 * 109.47349 * 55.00242 * 15 12 11 43 43 H 0.96999 * 120.00264 * 179.97438 * 19 18 16 44 44 H 1.08006 * 120.02917 * 180.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 0.0002 9 6 6.0700 2.6253 -1.4423 10 7 7.5370 2.7037 -1.4422 11 6 8.0628 2.7323 -2.8136 12 6 9.5900 2.8146 -2.7727 13 1 9.8916 3.6738 -2.1737 14 6 10.1531 1.5356 -2.1499 15 6 10.1306 2.9698 -4.1956 16 6 11.6229 3.1739 -4.1464 17 1 12.1346 3.1908 -3.1954 18 6 12.3352 3.3381 -5.3155 19 7 11.7122 3.3170 -6.4735 20 14 14.1848 3.5918 -5.2545 21 1 14.8674 2.2744 -5.3155 22 1 14.6089 4.4229 -6.4097 23 1 14.5487 4.2796 -3.9897 24 6 3.4311 1.2849 -0.0001 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.2128 2.3203 -0.0106 29 1 1.3339 4.5114 0.0011 30 1 3.7922 4.6381 0.0002 31 1 5.8756 3.5067 0.5138 32 1 5.9714 1.7293 0.5143 33 1 5.7553 1.7169 -1.9559 34 1 5.6595 3.4943 -1.9564 35 1 7.9397 1.9429 -0.9160 36 1 7.7613 1.8251 -3.3372 37 1 7.6662 3.6024 -3.3367 38 1 9.7679 1.4250 -1.1362 39 1 9.8515 0.6764 -2.7489 40 1 11.2412 1.5940 -2.1211 41 1 9.9056 2.0711 -4.7698 42 1 9.6615 3.8314 -4.6705 43 1 12.2132 3.4329 -7.2960 44 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602514827.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:25 Heat of formation + Delta-G solvation = -57.705739 kcal Electronic energy + Delta-G solvation = -20335.679464 eV Core-core repulsion = 17251.391908 eV Total energy + Delta-G solvation = -3084.287556 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.09676 -38.98624 -38.24702 -36.00960 -34.37801 -32.86873 -31.43605 -29.48443 -28.54513 -28.03080 -26.62761 -24.58767 -23.50856 -23.23846 -21.76472 -20.59903 -18.71313 -18.48183 -17.33153 -17.01918 -16.77790 -16.64936 -16.59419 -15.85393 -15.40473 -15.29273 -14.78003 -14.54726 -14.26943 -14.19223 -13.82802 -13.60653 -13.48835 -13.29286 -12.81059 -12.79765 -12.72149 -12.58852 -12.41903 -12.23115 -12.00669 -11.94743 -11.85235 -11.67470 -11.46355 -11.05967 -10.92420 -10.52732 -9.77693 -9.36813 -9.15009 -8.16536 -6.25714 0.34109 0.49074 1.40969 1.42209 1.53339 2.36618 2.42974 2.76387 3.16741 3.25649 3.87441 3.94715 4.06535 4.16430 4.23035 4.26613 4.32415 4.36805 4.38254 4.44687 4.49638 4.54115 4.62759 4.70320 4.74374 4.77643 4.87369 4.98488 5.04329 5.08406 5.19418 5.26028 5.34172 5.40122 5.49571 5.49839 5.56570 5.69960 5.80785 5.83660 5.90187 6.07193 6.31926 6.45960 6.52565 6.90356 7.42425 8.95617 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.039679 B = 0.002299 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.500739 B =12174.764636 C =12272.247852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.341 6.341 3 C 0.112 3.888 4 C -0.217 4.217 5 C -0.081 4.081 6 C -0.162 4.162 7 C -0.046 4.046 8 C -0.070 4.070 9 C 0.068 3.932 10 N -0.688 5.688 11 C 0.077 3.923 12 C -0.076 4.076 13 H 0.058 0.942 14 C -0.127 4.127 15 C 0.031 3.969 16 C -0.528 4.528 17 H 0.062 0.938 18 C -0.005 4.005 19 N -0.936 5.936 20 Si 0.963 3.037 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.263 1.263 24 C -0.168 4.168 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.116 0.884 28 H 0.147 0.853 29 H 0.149 0.851 30 H 0.136 0.864 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.024 0.976 34 H 0.066 0.934 35 H 0.346 0.654 36 H 0.021 0.979 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.039 0.961 40 H 0.046 0.954 41 H -0.011 1.011 42 H -0.014 1.014 43 H 0.262 0.738 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.471 -3.558 16.314 28.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.255 6.255 3 C 0.067 3.933 4 C -0.236 4.236 5 C -0.099 4.099 6 C -0.180 4.180 7 C -0.047 4.047 8 C -0.107 4.107 9 C -0.061 4.061 10 N -0.321 5.321 11 C -0.053 4.053 12 C -0.094 4.094 13 H 0.077 0.923 14 C -0.185 4.185 15 C -0.006 4.006 16 C -0.566 4.566 17 H 0.080 0.920 18 C -0.202 4.202 19 N -0.577 5.577 20 Si 0.788 3.212 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.187 1.187 24 C -0.187 4.187 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.135 0.865 28 H 0.165 0.835 29 H 0.167 0.833 30 H 0.154 0.846 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.042 0.958 34 H 0.085 0.915 35 H 0.165 0.835 36 H 0.039 0.961 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.007 0.993 42 H 0.004 0.996 43 H 0.070 0.930 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -23.362 -3.061 16.210 28.600 hybrid contribution 0.552 -0.709 -0.962 1.317 sum -22.810 -3.771 15.248 27.695 Atomic orbital electron populations 1.23324 0.76480 1.05474 1.02249 1.86046 1.23501 1.27128 1.88802 1.19207 0.92470 0.84882 0.96775 1.21500 1.01070 0.92051 1.08931 1.21272 0.94555 0.97879 0.96187 1.21265 0.94322 0.98472 1.03937 1.19722 0.95786 0.92343 0.96823 1.20508 0.89722 1.04298 0.96194 1.21886 0.87441 1.00147 0.96649 1.60495 1.05927 1.51788 1.13856 1.21835 0.94945 0.99220 0.89259 1.21020 0.93027 0.98432 0.96960 0.92304 1.21661 1.00946 0.96271 0.99592 1.19018 0.94975 0.94341 0.92279 1.21647 0.93999 1.48209 0.92719 0.91958 1.25988 1.03661 0.95329 0.95245 1.70106 1.37668 1.51819 0.98128 0.85475 0.79541 0.78300 0.77912 1.19850 1.20995 1.18709 1.20461 0.91901 0.98524 1.07812 0.91522 0.91855 0.86548 0.83487 0.83312 0.84612 0.89279 0.90157 0.95761 0.91531 0.83472 0.96115 0.92552 0.91278 0.94218 0.93477 0.99308 0.99553 0.92970 0.85585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.34 -6.69 10.50 -92.48 -0.97 -7.66 16 3 C 0.11 2.31 6.69 22.50 0.15 2.46 16 4 C -0.22 -3.62 9.04 22.37 0.20 -3.42 16 5 C -0.08 -1.30 10.04 22.26 0.22 -1.07 16 6 C -0.16 -2.97 9.70 22.28 0.22 -2.76 16 7 C -0.05 -0.94 5.13 -19.88 -0.10 -1.04 16 8 C -0.07 -1.38 5.60 29.85 0.17 -1.22 16 9 C 0.07 1.66 5.67 86.30 0.49 2.15 16 10 N -0.69 -19.60 6.50 -513.89 -3.34 -22.94 16 11 C 0.08 2.72 5.14 86.30 0.44 3.17 16 12 C -0.08 -3.14 2.55 -10.79 -0.03 -3.16 16 13 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 14 C -0.13 -4.67 8.78 71.98 0.63 -4.04 16 15 C 0.03 1.69 4.45 29.85 0.13 1.82 16 16 C -0.53 -30.21 8.41 25.60 0.22 -29.99 16 17 H 0.06 3.42 7.06 -2.91 -0.02 3.40 16 18 C -0.01 -0.30 5.46 84.66 0.46 0.16 16 19 N -0.94 -58.02 13.29 21.45 0.28 -57.74 16 20 Si 0.96 44.96 29.54 68.60 2.03 46.99 16 21 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 22 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 23 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 24 C -0.17 -3.67 9.64 22.36 0.22 -3.45 16 25 H 0.07 0.52 7.67 -2.39 -0.02 0.50 16 26 H 0.06 0.54 7.65 -2.39 -0.02 0.52 16 27 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.15 1.67 6.30 -2.91 -0.02 1.65 16 29 H 0.15 1.56 8.06 -2.91 -0.02 1.53 16 30 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 31 H 0.09 1.71 8.08 -2.39 -0.02 1.69 16 32 H 0.08 1.46 8.08 -2.39 -0.02 1.44 16 33 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.35 8.90 6.99 -89.70 -0.63 8.27 16 36 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.07 2.02 6.68 -2.39 -0.02 2.00 16 39 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.05 1.86 6.95 -2.39 -0.02 1.85 16 41 H -0.01 -0.67 8.14 -2.39 -0.02 -0.68 16 42 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 43 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 44 H 0.13 2.67 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -67.92 358.45 2.87 -65.05 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.33 Total: 15.40 kcal Atomic # 6 Polarization: -43.63 SS G_CDS: 4.53 Total: -39.09 kcal Atomic # 7 Polarization: -77.63 SS G_CDS: -3.05 Total: -80.68 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.97 Total: -7.66 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -67.92 2.87 -65.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602514827.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.349 kcal (2) G-P(sol) polarization free energy of solvation -67.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds