Wall clock time and date at job start Mon Mar 30 2020 02:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42903 * 109.47162 * 2 1 4 4 C 1.35896 * 116.99811 * 180.02562 * 3 2 1 5 5 C 1.38755 * 120.05772 * 0.02562 * 4 3 2 6 6 C 1.38123 * 119.94386 * 179.97438 * 5 4 3 7 7 C 1.38284 * 120.05592 * 359.74654 * 6 5 4 8 8 C 1.38246 * 120.11084 * 0.51067 * 7 6 5 9 9 C 1.50706 * 119.97383 * 179.76405 * 8 7 6 10 10 N 1.46893 * 109.47176 * 269.72831 * 9 8 7 11 11 C 1.46903 * 110.99924 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.47090 * 179.97438 * 11 10 9 13 13 H 1.09001 * 109.47116 * 304.99858 * 12 11 10 14 14 C 1.53000 * 109.47203 * 65.00075 * 12 11 10 15 15 C 1.52996 * 109.47118 * 184.99777 * 12 11 10 16 16 C 1.50703 * 109.47343 * 175.00132 * 15 12 11 17 17 H 1.07997 * 119.99829 * 0.02562 * 16 15 12 18 18 C 1.37874 * 120.00190 * 180.02562 * 16 15 12 19 19 N 1.31515 * 120.00148 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 120.00154 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47431 * 89.99740 * 20 18 16 22 22 H 1.48492 * 109.47201 * 210.00404 * 20 18 16 23 23 H 1.48503 * 109.46831 * 329.99961 * 20 18 16 24 24 C 1.38167 * 120.05898 * 359.49012 * 8 7 6 25 25 H 1.08993 * 109.47242 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47188 * 300.00083 * 1 2 3 27 27 H 1.09000 * 109.47035 * 59.99638 * 1 2 3 28 28 H 1.09001 * 109.46846 * 240.00248 * 2 1 3 29 29 H 1.09000 * 109.47035 * 120.00361 * 2 1 3 30 30 H 1.07995 * 120.02737 * 359.95989 * 5 4 3 31 31 H 1.07995 * 119.96781 * 180.02562 * 6 5 4 32 32 H 1.07999 * 119.94679 * 180.27649 * 7 6 5 33 33 H 1.09001 * 109.46953 * 29.72291 * 9 8 7 34 34 H 1.09000 * 109.47318 * 149.71889 * 9 8 7 35 35 H 1.00904 * 110.99720 * 303.94906 * 10 9 8 36 36 H 1.08993 * 109.46933 * 299.99334 * 11 10 9 37 37 H 1.09003 * 109.46864 * 60.00013 * 11 10 9 38 38 H 1.08993 * 109.47273 * 180.02562 * 14 12 11 39 39 H 1.08999 * 109.46977 * 299.99935 * 14 12 11 40 40 H 1.09001 * 109.46807 * 59.99593 * 14 12 11 41 41 H 1.09003 * 109.47123 * 295.00294 * 15 12 11 42 42 H 1.09001 * 109.47187 * 55.00114 * 15 12 11 43 43 H 0.96994 * 120.00210 * 179.97438 * 19 18 16 44 44 H 1.07994 * 120.03098 * 180.23012 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 4.2000 0.4257 -0.0016 6 6 5.5689 0.6094 -0.0027 7 6 6.0962 1.8877 -0.0080 8 6 5.2552 2.9849 -0.0016 9 6 5.8332 4.3767 -0.0021 10 7 6.0222 4.8289 1.3827 11 6 6.5861 6.1848 1.4214 12 6 6.7675 6.6204 2.8769 13 1 5.8180 6.5293 3.4044 14 6 7.8125 5.7281 3.5498 15 6 7.2367 8.0760 2.9189 16 6 7.2974 8.5431 4.3505 17 1 7.0287 7.8690 5.1503 18 6 7.6961 9.8310 4.6391 19 7 7.7487 10.2388 5.8883 20 14 8.1602 10.9973 3.2556 21 1 6.9536 11.7366 2.8055 22 1 9.1790 11.9619 3.7422 23 1 8.7172 10.2203 2.1192 24 6 3.8851 2.8066 -0.0005 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.7886 -0.5728 -0.0013 31 1 6.2280 -0.2462 -0.0039 32 1 7.1669 2.0292 -0.0134 33 1 6.7941 4.3708 -0.5166 34 1 5.1504 5.0536 -0.5154 35 1 5.1569 4.7818 1.8997 36 1 7.5522 6.1911 0.9169 37 1 5.9086 6.8745 0.9179 38 1 7.9414 6.0381 4.5867 39 1 7.4782 4.6911 3.5198 40 1 8.7619 5.8192 3.0222 41 1 8.2269 8.1517 2.4697 42 1 6.5367 8.6996 2.3627 43 1 8.0295 11.1447 6.0913 44 1 3.2285 3.6641 0.0008 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602515052.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:22 Heat of formation + Delta-G solvation = -35.004424 kcal Electronic energy + Delta-G solvation = -20555.478739 eV Core-core repulsion = 17472.175586 eV Total energy + Delta-G solvation = -3083.303153 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.35613 -38.17633 -36.71729 -34.20223 -32.31413 -32.20358 -30.84592 -29.66161 -27.52979 -26.21653 -24.46523 -23.49976 -22.66873 -21.85993 -20.91360 -19.16284 -18.02186 -16.72975 -16.39982 -16.30812 -16.15819 -15.14769 -14.81482 -14.65462 -14.13562 -13.90908 -13.64209 -13.57626 -13.26094 -12.99561 -12.84387 -12.45148 -12.17441 -12.01547 -11.93233 -11.70352 -11.60666 -11.46311 -11.02157 -10.96670 -10.91468 -10.65987 -10.34773 -9.88862 -9.62856 -9.44909 -9.04572 -8.99267 -8.48714 -8.33622 -8.16945 -5.99060 -3.95797 1.14512 1.32926 2.92406 3.33330 3.40829 3.44685 3.58502 4.47467 4.49416 4.54261 4.55633 4.67449 4.77037 4.83200 4.92132 5.06111 5.20006 5.32021 5.34476 5.35121 5.40161 5.50561 5.60029 5.66913 5.67427 5.79188 5.91603 6.06391 6.13137 6.28485 6.32877 6.44732 6.52459 6.60661 6.63030 6.88404 7.07550 7.17186 7.22326 7.26040 7.33237 7.50814 7.60585 7.86009 8.60816 9.07009 9.63862 11.14426 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.028581 B = 0.002684 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.448628 B =10427.772482 C =10765.068954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.318 6.318 4 C 0.127 3.873 5 C -0.212 4.212 6 C -0.082 4.082 7 C -0.134 4.134 8 C -0.037 4.037 9 C 0.095 3.905 10 N -0.681 5.681 11 C 0.061 3.939 12 C -0.074 4.074 13 H 0.059 0.941 14 C -0.124 4.124 15 C -0.009 4.009 16 C -0.512 4.512 17 H 0.074 0.926 18 C 0.064 3.936 19 N -0.906 5.906 20 Si 0.878 3.122 21 H -0.279 1.279 22 H -0.289 1.289 23 H -0.266 1.266 24 C -0.147 4.147 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.081 0.919 34 H 0.037 0.963 35 H 0.341 0.659 36 H 0.067 0.933 37 H 0.025 0.975 38 H 0.058 0.942 39 H 0.044 0.956 40 H 0.039 0.961 41 H 0.016 0.984 42 H 0.008 0.992 43 H 0.262 0.738 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.808 -21.946 -15.443 28.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.232 6.232 4 C 0.082 3.918 5 C -0.231 4.231 6 C -0.100 4.100 7 C -0.153 4.153 8 C -0.037 4.037 9 C -0.034 4.034 10 N -0.312 5.312 11 C -0.068 4.068 12 C -0.093 4.093 13 H 0.078 0.922 14 C -0.182 4.182 15 C -0.047 4.047 16 C -0.550 4.550 17 H 0.092 0.908 18 C -0.137 4.137 19 N -0.545 5.545 20 Si 0.706 3.294 21 H -0.205 1.205 22 H -0.215 1.215 23 H -0.191 1.191 24 C -0.166 4.166 25 H 0.096 0.904 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.142 0.858 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.100 0.900 34 H 0.055 0.945 35 H 0.159 0.841 36 H 0.086 0.914 37 H 0.043 0.957 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.034 0.966 42 H 0.026 0.974 43 H 0.071 0.929 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.303 -21.943 -15.269 28.306 hybrid contribution -0.449 1.012 -0.867 1.406 sum -9.752 -20.932 -16.137 28.172 Atomic orbital electron populations 1.21779 0.92762 1.02806 1.03629 1.22761 0.95857 0.82097 1.01297 1.86072 1.19188 1.29162 1.88770 1.18917 0.82129 0.94070 0.96678 1.21192 0.94501 0.97772 1.09651 1.20928 0.94220 0.97320 0.97581 1.20969 1.00035 0.91686 1.02622 1.19642 0.91958 0.95645 0.96477 1.20907 1.00050 0.90963 0.91446 1.60548 1.33201 1.26206 1.11205 1.22212 0.98782 0.86666 0.99102 1.21006 0.99226 0.96920 0.92104 0.92217 1.21596 0.97664 0.97891 1.01025 1.19620 0.95787 0.91381 0.97947 1.21138 1.44560 0.97850 0.91411 0.90819 1.25036 0.95236 0.98141 0.95255 1.69915 1.48726 1.18088 1.17773 0.86801 0.78509 0.80977 0.83112 1.20461 1.21497 1.19063 1.20324 0.94737 0.94861 1.06709 0.90414 0.91402 0.91540 0.92181 0.92048 0.85836 0.85862 0.85643 0.90049 0.94455 0.84139 0.91421 0.95710 0.92266 0.93657 0.94221 0.96587 0.97389 0.92858 0.85481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.28 37.16 0.38 -0.49 16 2 C 0.06 0.40 5.46 37.16 0.20 0.61 16 3 O -0.32 -3.48 10.14 -19.41 -0.20 -3.67 16 4 C 0.13 1.46 6.69 -39.21 -0.26 1.19 16 5 C -0.21 -2.12 9.04 -39.43 -0.36 -2.47 16 6 C -0.08 -0.81 10.04 -39.61 -0.40 -1.21 16 7 C -0.13 -1.48 9.70 -39.56 -0.38 -1.86 16 8 C -0.04 -0.43 5.39 -104.64 -0.56 -0.99 16 9 C 0.10 1.15 5.81 -4.98 -0.03 1.12 16 10 N -0.68 -9.68 5.94 -115.06 -0.68 -10.36 16 11 C 0.06 0.99 5.08 -3.82 -0.02 0.97 16 12 C -0.07 -1.46 2.48 -90.62 -0.22 -1.69 16 13 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 14 C -0.12 -2.42 8.89 37.16 0.33 -2.09 16 15 C -0.01 -0.23 3.52 -27.88 -0.10 -0.33 16 16 C -0.51 -14.60 8.96 -34.44 -0.31 -14.91 16 17 H 0.07 2.26 7.30 -52.49 -0.38 1.88 16 18 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 19 N -0.91 -28.23 13.96 55.43 0.77 -27.46 16 20 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 23 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 24 C -0.15 -1.75 9.64 -39.43 -0.38 -2.13 16 25 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 29 H 0.06 0.40 7.66 -51.93 -0.40 0.01 16 30 H 0.12 0.95 6.30 -52.49 -0.33 0.62 16 31 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 34 H 0.04 0.43 8.08 -51.93 -0.42 0.01 16 35 H 0.34 4.80 8.72 -39.29 -0.34 4.46 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 39 H 0.04 0.80 7.75 -51.93 -0.40 0.40 16 40 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 42 H 0.01 0.19 7.57 -51.93 -0.39 -0.21 16 43 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 44 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 357.46 15.07 5.39 5.39 Total: -1.00 -31.48 357.46 -9.21 -40.69 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -7.62 Total: 0.56 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: -2.21 Total: -22.49 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.09 Total: -37.82 kcal Atomic # 8 Polarization: -3.48 SS G_CDS: -0.20 Total: -3.67 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.48 -9.21 -40.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602515052.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.683 kcal (2) G-P(sol) polarization free energy of solvation -31.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds