Wall clock time and date at job start Mon Mar 30 2020 02:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42903 * 109.47162 * 2 1 4 4 C 1.35896 * 116.99811 * 180.02562 * 3 2 1 5 5 C 1.38755 * 120.05772 * 0.02562 * 4 3 2 6 6 C 1.38123 * 119.94386 * 179.97438 * 5 4 3 7 7 C 1.38284 * 120.05592 * 359.74654 * 6 5 4 8 8 C 1.38246 * 120.11084 * 0.51067 * 7 6 5 9 9 C 1.50706 * 119.97383 * 179.76405 * 8 7 6 10 10 N 1.46893 * 109.47176 * 269.72831 * 9 8 7 11 11 C 1.46903 * 110.99924 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.47090 * 179.97438 * 11 10 9 13 13 H 1.09001 * 109.47116 * 304.99858 * 12 11 10 14 14 C 1.53000 * 109.47203 * 65.00075 * 12 11 10 15 15 C 1.52996 * 109.47118 * 184.99777 * 12 11 10 16 16 C 1.50703 * 109.47343 * 175.00132 * 15 12 11 17 17 H 1.07997 * 119.99829 * 0.02562 * 16 15 12 18 18 C 1.37874 * 120.00190 * 180.02562 * 16 15 12 19 19 N 1.31515 * 120.00148 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 120.00154 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47431 * 89.99740 * 20 18 16 22 22 H 1.48492 * 109.47201 * 210.00404 * 20 18 16 23 23 H 1.48503 * 109.46831 * 329.99961 * 20 18 16 24 24 C 1.38167 * 120.05898 * 359.49012 * 8 7 6 25 25 H 1.08993 * 109.47242 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47188 * 300.00083 * 1 2 3 27 27 H 1.09000 * 109.47035 * 59.99638 * 1 2 3 28 28 H 1.09001 * 109.46846 * 240.00248 * 2 1 3 29 29 H 1.09000 * 109.47035 * 120.00361 * 2 1 3 30 30 H 1.07995 * 120.02737 * 359.95989 * 5 4 3 31 31 H 1.07995 * 119.96781 * 180.02562 * 6 5 4 32 32 H 1.07999 * 119.94679 * 180.27649 * 7 6 5 33 33 H 1.09001 * 109.46953 * 29.72291 * 9 8 7 34 34 H 1.09000 * 109.47318 * 149.71889 * 9 8 7 35 35 H 1.00904 * 110.99720 * 303.94906 * 10 9 8 36 36 H 1.08993 * 109.46933 * 299.99334 * 11 10 9 37 37 H 1.09003 * 109.46864 * 60.00013 * 11 10 9 38 38 H 1.08993 * 109.47273 * 180.02562 * 14 12 11 39 39 H 1.08999 * 109.46977 * 299.99935 * 14 12 11 40 40 H 1.09001 * 109.46807 * 59.99593 * 14 12 11 41 41 H 1.09003 * 109.47123 * 295.00294 * 15 12 11 42 42 H 1.09001 * 109.47187 * 55.00114 * 15 12 11 43 43 H 0.96994 * 120.00210 * 179.97438 * 19 18 16 44 44 H 1.07994 * 120.03098 * 180.23012 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 4.2000 0.4257 -0.0016 6 6 5.5689 0.6094 -0.0027 7 6 6.0962 1.8877 -0.0080 8 6 5.2552 2.9849 -0.0016 9 6 5.8332 4.3767 -0.0021 10 7 6.0222 4.8289 1.3827 11 6 6.5861 6.1848 1.4214 12 6 6.7675 6.6204 2.8769 13 1 5.8180 6.5293 3.4044 14 6 7.8125 5.7281 3.5498 15 6 7.2367 8.0760 2.9189 16 6 7.2974 8.5431 4.3505 17 1 7.0287 7.8690 5.1503 18 6 7.6961 9.8310 4.6391 19 7 7.7487 10.2388 5.8883 20 14 8.1602 10.9973 3.2556 21 1 6.9536 11.7366 2.8055 22 1 9.1790 11.9619 3.7422 23 1 8.7172 10.2203 2.1192 24 6 3.8851 2.8066 -0.0005 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.7886 -0.5728 -0.0013 31 1 6.2280 -0.2462 -0.0039 32 1 7.1669 2.0292 -0.0134 33 1 6.7941 4.3708 -0.5166 34 1 5.1504 5.0536 -0.5154 35 1 5.1569 4.7818 1.8997 36 1 7.5522 6.1911 0.9169 37 1 5.9086 6.8745 0.9179 38 1 7.9414 6.0381 4.5867 39 1 7.4782 4.6911 3.5198 40 1 8.7619 5.8192 3.0222 41 1 8.2269 8.1517 2.4697 42 1 6.5367 8.6996 2.3627 43 1 8.0295 11.1447 6.0913 44 1 3.2285 3.6641 0.0008 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602515052.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:21 Heat of formation + Delta-G solvation = -53.763037 kcal Electronic energy + Delta-G solvation = -20556.292173 eV Core-core repulsion = 17472.175586 eV Total energy + Delta-G solvation = -3084.116587 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.11915 -39.05667 -38.02029 -35.67014 -34.13308 -32.88488 -31.95365 -30.43470 -29.38191 -27.42246 -25.72578 -24.34468 -23.61274 -23.34111 -21.71612 -20.74683 -18.99893 -18.74333 -17.12002 -17.03459 -16.95960 -16.49328 -16.21707 -15.77102 -15.61465 -15.22833 -14.83281 -14.41733 -14.32258 -14.20255 -13.90637 -13.58979 -13.42981 -13.12933 -13.07019 -12.85979 -12.76398 -12.55828 -12.39938 -12.28919 -12.10058 -11.80601 -11.68511 -11.62664 -11.43999 -11.19329 -11.02688 -10.72663 -9.86945 -9.29401 -9.12585 -8.25199 -6.27566 0.33646 0.52111 1.36406 1.38385 1.50329 2.26199 2.38534 2.75305 3.09918 3.44068 3.82311 3.87551 4.05324 4.08073 4.15233 4.17941 4.26347 4.36556 4.37159 4.44415 4.49596 4.55604 4.67767 4.74402 4.88074 4.90136 4.92459 4.93150 4.97036 5.10864 5.11935 5.20033 5.36227 5.40098 5.42518 5.50434 5.56419 5.69442 5.72361 5.74062 5.84172 6.08887 6.35598 6.43971 6.49515 6.80184 7.35809 8.91660 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.028581 B = 0.002684 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.448628 B =10427.772482 C =10765.068954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.338 6.338 4 C 0.114 3.886 5 C -0.212 4.212 6 C -0.083 4.083 7 C -0.145 4.145 8 C -0.046 4.046 9 C 0.099 3.901 10 N -0.683 5.683 11 C 0.074 3.926 12 C -0.070 4.070 13 H 0.047 0.953 14 C -0.115 4.115 15 C -0.007 4.007 16 C -0.518 4.518 17 H 0.033 0.967 18 C -0.001 4.001 19 N -0.955 5.955 20 Si 0.949 3.051 21 H -0.269 1.269 22 H -0.286 1.286 23 H -0.245 1.245 24 C -0.165 4.165 25 H 0.101 0.899 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.147 0.853 31 H 0.150 0.850 32 H 0.134 0.866 33 H 0.090 0.910 34 H 0.042 0.958 35 H 0.340 0.660 36 H 0.075 0.925 37 H 0.029 0.971 38 H 0.025 0.975 39 H 0.063 0.937 40 H 0.045 0.955 41 H 0.020 0.980 42 H 0.015 0.985 43 H 0.264 0.736 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.663 -23.326 -17.938 30.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 O -0.252 6.252 4 C 0.069 3.931 5 C -0.231 4.231 6 C -0.100 4.100 7 C -0.164 4.164 8 C -0.046 4.046 9 C -0.029 4.029 10 N -0.314 5.314 11 C -0.055 4.055 12 C -0.089 4.089 13 H 0.065 0.935 14 C -0.173 4.173 15 C -0.045 4.045 16 C -0.556 4.556 17 H 0.051 0.949 18 C -0.197 4.197 19 N -0.596 5.596 20 Si 0.773 3.227 21 H -0.194 1.194 22 H -0.212 1.212 23 H -0.169 1.169 24 C -0.184 4.184 25 H 0.120 0.880 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.164 0.836 31 H 0.167 0.833 32 H 0.152 0.848 33 H 0.108 0.892 34 H 0.060 0.940 35 H 0.158 0.842 36 H 0.093 0.907 37 H 0.048 0.952 38 H 0.045 0.955 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.038 0.962 42 H 0.033 0.967 43 H 0.073 0.927 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.170 -23.352 -17.780 30.749 hybrid contribution -0.564 1.313 -0.014 1.429 sum -9.735 -22.039 -17.794 29.952 Atomic orbital electron populations 1.21814 0.91740 1.04176 1.03032 1.23047 0.96740 0.80785 1.02280 1.86055 1.19039 1.31377 1.88772 1.19107 0.82699 0.94404 0.96936 1.21486 0.94539 0.98441 1.08615 1.21263 0.94588 0.97782 0.96403 1.21178 1.00455 0.92032 1.02705 1.19623 0.91987 0.95674 0.97352 1.20905 1.00668 0.91305 0.90021 1.60494 1.33354 1.24708 1.12818 1.21942 0.99559 0.87914 0.96037 1.20886 0.98463 0.94729 0.94842 0.93459 1.21491 0.98017 0.98802 0.98957 1.19575 0.96246 0.93964 0.94713 1.21459 1.43742 0.97405 0.93029 0.94856 1.26030 0.95345 1.00284 0.98038 1.70076 1.50353 1.18810 1.20371 0.85669 0.78557 0.78502 0.79972 1.19381 1.21204 1.16873 1.20420 0.95002 0.95288 1.07676 0.88042 0.92204 0.91923 0.90874 0.91251 0.83581 0.83275 0.84828 0.89205 0.94006 0.84206 0.90655 0.95239 0.95543 0.91777 0.93563 0.96155 0.96697 0.92703 0.85932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.28 71.98 0.74 -0.76 16 2 C 0.05 0.60 5.46 71.98 0.39 0.99 16 3 O -0.34 -7.15 10.14 -92.38 -0.94 -8.09 16 4 C 0.11 2.49 6.69 22.51 0.15 2.64 16 5 C -0.21 -3.78 9.04 22.37 0.20 -3.58 16 6 C -0.08 -1.42 10.04 22.25 0.22 -1.19 16 7 C -0.14 -2.90 9.70 22.28 0.22 -2.68 16 8 C -0.05 -1.02 5.39 -19.88 -0.11 -1.12 16 9 C 0.10 2.22 5.81 85.56 0.50 2.71 16 10 N -0.68 -18.30 5.94 -517.93 -3.08 -21.37 16 11 C 0.07 2.28 5.08 86.30 0.44 2.72 16 12 C -0.07 -2.75 2.48 -10.79 -0.03 -2.78 16 13 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 14 C -0.12 -4.45 8.89 71.98 0.64 -3.81 16 15 C -0.01 -0.33 3.52 29.85 0.10 -0.23 16 16 C -0.52 -30.24 8.96 25.60 0.23 -30.01 16 17 H 0.03 2.15 7.30 -2.91 -0.02 2.13 16 18 C 0.00 -0.06 5.47 84.65 0.46 0.40 16 19 N -0.95 -61.09 13.96 21.45 0.30 -60.79 16 20 Si 0.95 45.01 27.47 68.60 1.88 46.89 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 23 H -0.25 -10.73 6.54 99.48 0.65 -10.08 16 24 C -0.16 -3.82 9.64 22.37 0.22 -3.61 16 25 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 0.75 7.66 -2.39 -0.02 0.73 16 29 H 0.07 0.78 7.66 -2.39 -0.02 0.76 16 30 H 0.15 1.83 6.30 -2.91 -0.02 1.81 16 31 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 32 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 33 H 0.09 1.85 8.08 -2.39 -0.02 1.83 16 34 H 0.04 0.90 8.08 -2.39 -0.02 0.88 16 35 H 0.34 9.25 8.72 -89.69 -0.78 8.47 16 36 H 0.08 2.22 8.14 -2.39 -0.02 2.21 16 37 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.03 1.16 6.95 -2.39 -0.02 1.14 16 39 H 0.06 2.20 7.75 -2.39 -0.02 2.19 16 40 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.02 0.94 7.20 -2.39 -0.02 0.92 16 42 H 0.01 0.68 7.57 -2.39 -0.02 0.66 16 43 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 44 H 0.12 2.82 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -68.73 357.46 2.67 -66.06 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: 0.12 Total: 17.61 kcal Atomic # 6 Polarization: -44.69 SS G_CDS: 4.38 Total: -40.31 kcal Atomic # 7 Polarization: -79.39 SS G_CDS: -2.78 Total: -82.16 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -0.94 Total: -8.09 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.88 Total: 46.89 kcal Total: -68.73 2.67 -66.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602515052.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.298 kcal (2) G-P(sol) polarization free energy of solvation -68.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds