Wall clock time and date at job start Mon Mar 30 2020 01:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00220 * 2 1 4 4 H 1.09003 * 109.47057 * 29.99535 * 3 2 1 5 5 C 1.53004 * 109.46983 * 270.00064 * 3 2 1 6 6 N 1.46895 * 109.47035 * 64.99805 * 5 3 2 7 7 C 1.46906 * 110.99789 * 179.97438 * 6 5 3 8 8 C 1.53002 * 109.47053 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.47495 * 305.00162 * 8 7 6 10 10 C 1.53005 * 109.46814 * 65.00187 * 8 7 6 11 11 C 1.53000 * 109.47125 * 184.99886 * 8 7 6 12 12 C 1.50699 * 109.47133 * 175.00170 * 11 8 7 13 13 H 1.07994 * 120.00160 * 0.02562 * 12 11 8 14 14 C 1.37880 * 119.99778 * 180.02562 * 12 11 8 15 15 N 1.31513 * 119.99924 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 120.00221 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.46816 * 90.00349 * 16 14 12 18 18 H 1.48499 * 109.47133 * 210.00729 * 16 14 12 19 19 H 1.48502 * 109.46942 * 330.00530 * 16 14 12 20 20 C 1.50695 * 109.47344 * 149.99603 * 3 2 1 21 21 C 1.38242 * 119.99744 * 39.72859 * 20 3 2 22 22 C 1.38235 * 120.00055 * 179.78470 * 21 20 3 23 23 C 1.38239 * 119.99493 * 0.44432 * 22 21 20 24 24 C 1.38229 * 120.00252 * 359.80913 * 23 22 21 25 25 C 1.38227 * 120.00134 * 220.00027 * 20 3 2 26 26 H 1.08999 * 109.47052 * 60.00420 * 1 2 3 27 27 H 1.09001 * 109.46909 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47140 * 300.00120 * 1 2 3 29 29 H 1.08996 * 109.46863 * 304.99647 * 5 3 2 30 30 H 1.09002 * 109.46661 * 184.99824 * 5 3 2 31 31 H 1.00899 * 111.00672 * 56.04786 * 6 5 3 32 32 H 1.08992 * 109.47459 * 299.99826 * 7 6 5 33 33 H 1.09004 * 109.47040 * 59.99976 * 7 6 5 34 34 H 1.08993 * 109.46967 * 299.99663 * 10 8 7 35 35 H 1.08997 * 109.46762 * 60.00378 * 10 8 7 36 36 H 1.09004 * 109.46776 * 179.97438 * 10 8 7 37 37 H 1.08994 * 109.47370 * 295.00462 * 11 8 7 38 38 H 1.09006 * 109.46810 * 55.00266 * 11 8 7 39 39 H 0.96997 * 120.00137 * 179.97438 * 15 14 12 40 40 H 1.07999 * 120.00031 * 359.97438 * 21 20 3 41 41 H 1.07992 * 120.00024 * 180.27523 * 22 21 20 42 42 H 1.08004 * 119.99704 * 179.83220 * 23 22 21 43 43 H 1.08004 * 120.00338 * 179.97438 * 24 23 22 44 44 H 1.08001 * 120.00547 * 359.97438 * 25 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7713 -1.4425 6 7 0.9130 1.9268 -2.0993 7 6 1.0733 2.3748 -3.4892 8 6 -0.3039 2.5244 -4.1388 9 1 -0.8538 1.5880 -4.0446 10 6 -1.0786 3.6434 -3.4397 11 6 -0.1344 2.8696 -5.6197 12 6 -1.4853 2.8963 -6.2871 13 1 -2.3757 2.6883 -5.7124 14 6 -1.5845 3.1863 -7.6314 15 7 -2.7634 3.2101 -8.2137 16 14 -0.0445 3.5468 -8.6252 17 1 0.4868 2.2809 -9.1914 18 1 -0.3758 4.4825 -9.7297 19 1 0.9799 4.1635 -7.7445 20 6 3.3386 1.2639 0.7105 21 6 4.1871 0.1880 0.5271 22 6 5.4075 0.1520 1.1753 23 6 5.7754 1.1874 2.0140 24 6 4.9247 2.2607 2.2014 25 6 3.7061 2.2988 1.5498 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 2.8100 1.0319 -1.9815 30 1 2.7414 2.7273 -1.4438 31 1 0.3207 2.5591 -1.5820 32 1 1.5887 3.3350 -3.5043 33 1 1.6578 1.6398 -4.0426 34 1 -1.1994 3.3974 -2.3848 35 1 -0.5288 4.5797 -3.5340 36 1 -2.0596 3.7503 -3.9028 37 1 0.3364 3.8482 -5.7131 38 1 0.4927 2.1175 -6.0986 39 1 -2.8333 3.4144 -9.1593 40 1 3.8978 -0.6229 -0.1249 41 1 6.0723 -0.6864 1.0286 42 1 6.7278 1.1580 2.5226 43 1 5.2120 3.0695 2.8570 44 1 3.0416 3.1375 1.6962 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602517381.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:20 Heat of formation + Delta-G solvation = -33.820275 kcal Electronic energy + Delta-G solvation = -21128.895800 eV Core-core repulsion = 18045.643996 eV Total energy + Delta-G solvation = -3083.251804 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.83702 -38.02533 -36.67332 -34.01977 -32.47191 -31.66489 -31.10451 -28.36957 -27.29105 -26.40572 -24.90018 -23.15884 -22.68259 -21.75926 -21.01502 -19.01884 -17.27630 -16.95744 -16.66376 -15.86284 -15.65963 -15.10907 -14.68782 -14.61571 -14.23893 -13.93669 -13.66189 -13.57997 -13.13477 -13.03081 -12.80288 -12.54086 -12.12034 -12.05797 -11.77447 -11.69951 -11.39412 -11.23860 -11.02179 -10.92277 -10.67295 -10.41219 -9.91591 -9.77019 -9.66882 -9.40824 -9.12406 -9.07102 -8.92131 -8.51118 -8.20478 -6.01624 -3.98558 1.09017 1.20248 3.32083 3.39411 3.42908 3.50840 3.74887 4.22577 4.47372 4.66812 4.73573 4.85117 4.92827 4.97894 5.04163 5.29863 5.32040 5.36164 5.42888 5.46840 5.62433 5.65957 5.71252 5.74887 5.83233 5.86768 5.94022 6.03186 6.13561 6.23108 6.30463 6.35169 6.36679 6.44353 6.74457 6.77296 6.95811 7.04007 7.17174 7.21990 7.29898 7.46432 7.55161 7.83123 8.57606 9.03921 9.61379 11.11809 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.028000 B = 0.003076 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.759657 B = 9101.075576 C = 9526.927866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.374 6.374 3 C 0.135 3.865 4 H 0.065 0.935 5 C 0.041 3.959 6 N -0.685 5.685 7 C 0.062 3.938 8 C -0.075 4.075 9 H 0.071 0.929 10 C -0.135 4.135 11 C -0.009 4.009 12 C -0.513 4.513 13 H 0.074 0.926 14 C 0.065 3.935 15 N -0.905 5.905 16 Si 0.878 3.122 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.267 1.267 20 C -0.084 4.084 21 C -0.089 4.089 22 C -0.124 4.124 23 C -0.121 4.121 24 C -0.123 4.123 25 C -0.111 4.111 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.030 0.970 29 H 0.081 0.919 30 H 0.035 0.965 31 H 0.335 0.665 32 H 0.024 0.976 33 H 0.068 0.932 34 H 0.033 0.967 35 H 0.040 0.960 36 H 0.068 0.932 37 H 0.013 0.987 38 H 0.011 0.989 39 H 0.262 0.738 40 H 0.129 0.871 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.438 -3.089 21.644 26.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.293 6.293 3 C 0.076 3.924 4 H 0.083 0.917 5 C -0.089 4.089 6 N -0.317 5.317 7 C -0.066 4.066 8 C -0.094 4.094 9 H 0.090 0.910 10 C -0.193 4.193 11 C -0.046 4.046 12 C -0.551 4.551 13 H 0.092 0.908 14 C -0.136 4.136 15 N -0.545 5.545 16 Si 0.706 3.294 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.191 1.191 20 C -0.085 4.085 21 C -0.107 4.107 22 C -0.142 4.142 23 C -0.139 4.139 24 C -0.141 4.141 25 C -0.130 4.130 26 H 0.092 0.908 27 H 0.098 0.902 28 H 0.049 0.951 29 H 0.099 0.901 30 H 0.054 0.946 31 H 0.154 0.846 32 H 0.042 0.958 33 H 0.086 0.914 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.087 0.913 37 H 0.032 0.968 38 H 0.029 0.971 39 H 0.072 0.928 40 H 0.147 0.853 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 14.408 -3.885 21.292 26.001 hybrid contribution 0.836 1.384 -0.558 1.711 sum 15.244 -2.501 20.734 25.856 Atomic orbital electron populations 1.22946 0.80288 1.02654 1.01070 1.87848 1.20437 1.25980 1.95027 1.20837 0.91304 0.86070 0.94142 0.91691 1.22513 0.92255 0.99986 0.94095 1.60615 1.12867 1.54469 1.03746 1.22178 0.99081 0.97693 0.87675 1.21031 0.93006 0.98986 0.96379 0.91018 1.21748 1.01936 0.97830 0.97747 1.19600 0.97857 0.95872 0.91317 1.21128 0.92530 1.47146 0.94263 0.90826 1.25030 0.95709 0.95008 0.97851 1.69913 1.23074 1.50032 1.11438 0.86804 0.84196 0.78494 0.79914 1.20345 1.21511 1.19145 1.19743 0.95558 0.95419 0.97753 1.21062 0.93130 0.97751 0.98802 1.21201 0.96738 0.98830 0.97451 1.21175 0.99592 0.94389 0.98730 1.21084 0.94374 0.98582 1.00105 1.20991 0.97103 0.98254 0.96602 0.90819 0.90249 0.95147 0.90099 0.94649 0.84596 0.95784 0.91397 0.94832 0.94087 0.91289 0.96833 0.97108 0.92831 0.85347 0.86010 0.86199 0.86038 0.86111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.69 101.05 1.08 1.38 16 2 O -0.37 -4.76 9.66 -35.23 -0.34 -5.10 16 3 C 0.13 1.52 2.61 -27.88 -0.07 1.45 16 4 H 0.07 0.67 7.65 -51.93 -0.40 0.27 16 5 C 0.04 0.51 5.33 -3.82 -0.02 0.49 16 6 N -0.69 -9.39 4.50 -113.78 -0.51 -9.90 16 7 C 0.06 1.01 5.14 -3.82 -0.02 0.99 16 8 C -0.08 -1.45 2.55 -90.62 -0.23 -1.69 16 9 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 10 C -0.14 -2.42 8.77 37.16 0.33 -2.09 16 11 C -0.01 -0.20 3.52 -27.88 -0.10 -0.30 16 12 C -0.51 -14.44 8.96 -34.44 -0.31 -14.75 16 13 H 0.07 2.22 7.30 -52.49 -0.38 1.84 16 14 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 15 N -0.91 -27.98 13.96 55.43 0.77 -27.21 16 16 Si 0.88 21.89 27.47 -169.99 -4.67 17.22 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 20 C -0.08 -0.91 4.97 -104.63 -0.52 -1.43 16 21 C -0.09 -0.95 9.36 -39.58 -0.37 -1.32 16 22 C -0.12 -1.14 10.05 -39.58 -0.40 -1.53 16 23 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 24 C -0.12 -1.06 10.05 -39.58 -0.40 -1.45 16 25 C -0.11 -1.06 9.67 -39.58 -0.38 -1.44 16 26 H 0.07 0.90 6.20 -51.93 -0.32 0.58 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.03 0.29 8.08 -51.93 -0.42 -0.13 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.34 4.26 6.92 -39.29 -0.27 3.99 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.03 0.49 6.68 -51.93 -0.35 0.15 16 35 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 1.40 6.95 -51.93 -0.36 1.04 16 37 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 38 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 39 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.13 1.38 7.77 -52.49 -0.41 0.98 16 41 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 43 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 44 H 0.12 0.95 8.04 -52.49 -0.42 0.53 16 LS Contribution 353.35 15.07 5.32 5.32 Total: -1.00 -30.91 353.35 -8.82 -39.73 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -7.49 Total: 1.27 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: -1.91 Total: -21.34 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.26 Total: -37.11 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.34 Total: -5.10 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.91 -8.82 -39.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602517381.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.913 kcal (2) G-P(sol) polarization free energy of solvation -30.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds