Wall clock time and date at job start Mon Mar 30 2020 01:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00220 * 2 1 4 4 H 1.09003 * 109.47057 * 29.99535 * 3 2 1 5 5 C 1.53004 * 109.46983 * 270.00064 * 3 2 1 6 6 N 1.46895 * 109.47035 * 64.99805 * 5 3 2 7 7 C 1.46906 * 110.99789 * 179.97438 * 6 5 3 8 8 C 1.53002 * 109.47053 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.47495 * 305.00162 * 8 7 6 10 10 C 1.53005 * 109.46814 * 65.00187 * 8 7 6 11 11 C 1.53000 * 109.47125 * 184.99886 * 8 7 6 12 12 C 1.50699 * 109.47133 * 175.00170 * 11 8 7 13 13 H 1.07994 * 120.00160 * 0.02562 * 12 11 8 14 14 C 1.37880 * 119.99778 * 180.02562 * 12 11 8 15 15 N 1.31513 * 119.99924 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 120.00221 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.46816 * 90.00349 * 16 14 12 18 18 H 1.48499 * 109.47133 * 210.00729 * 16 14 12 19 19 H 1.48502 * 109.46942 * 330.00530 * 16 14 12 20 20 C 1.50695 * 109.47344 * 149.99603 * 3 2 1 21 21 C 1.38242 * 119.99744 * 39.72859 * 20 3 2 22 22 C 1.38235 * 120.00055 * 179.78470 * 21 20 3 23 23 C 1.38239 * 119.99493 * 0.44432 * 22 21 20 24 24 C 1.38229 * 120.00252 * 359.80913 * 23 22 21 25 25 C 1.38227 * 120.00134 * 220.00027 * 20 3 2 26 26 H 1.08999 * 109.47052 * 60.00420 * 1 2 3 27 27 H 1.09001 * 109.46909 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47140 * 300.00120 * 1 2 3 29 29 H 1.08996 * 109.46863 * 304.99647 * 5 3 2 30 30 H 1.09002 * 109.46661 * 184.99824 * 5 3 2 31 31 H 1.00899 * 111.00672 * 56.04786 * 6 5 3 32 32 H 1.08992 * 109.47459 * 299.99826 * 7 6 5 33 33 H 1.09004 * 109.47040 * 59.99976 * 7 6 5 34 34 H 1.08993 * 109.46967 * 299.99663 * 10 8 7 35 35 H 1.08997 * 109.46762 * 60.00378 * 10 8 7 36 36 H 1.09004 * 109.46776 * 179.97438 * 10 8 7 37 37 H 1.08994 * 109.47370 * 295.00462 * 11 8 7 38 38 H 1.09006 * 109.46810 * 55.00266 * 11 8 7 39 39 H 0.96997 * 120.00137 * 179.97438 * 15 14 12 40 40 H 1.07999 * 120.00031 * 359.97438 * 21 20 3 41 41 H 1.07992 * 120.00024 * 180.27523 * 22 21 20 42 42 H 1.08004 * 119.99704 * 179.83220 * 23 22 21 43 43 H 1.08004 * 120.00338 * 179.97438 * 24 23 22 44 44 H 1.08001 * 120.00547 * 359.97438 * 25 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7713 -1.4425 6 7 0.9130 1.9268 -2.0993 7 6 1.0733 2.3748 -3.4892 8 6 -0.3039 2.5244 -4.1388 9 1 -0.8538 1.5880 -4.0446 10 6 -1.0786 3.6434 -3.4397 11 6 -0.1344 2.8696 -5.6197 12 6 -1.4853 2.8963 -6.2871 13 1 -2.3757 2.6883 -5.7124 14 6 -1.5845 3.1863 -7.6314 15 7 -2.7634 3.2101 -8.2137 16 14 -0.0445 3.5468 -8.6252 17 1 0.4868 2.2809 -9.1914 18 1 -0.3758 4.4825 -9.7297 19 1 0.9799 4.1635 -7.7445 20 6 3.3386 1.2639 0.7105 21 6 4.1871 0.1880 0.5271 22 6 5.4075 0.1520 1.1753 23 6 5.7754 1.1874 2.0140 24 6 4.9247 2.2607 2.2014 25 6 3.7061 2.2988 1.5498 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 2.8100 1.0319 -1.9815 30 1 2.7414 2.7273 -1.4438 31 1 0.3207 2.5591 -1.5820 32 1 1.5887 3.3350 -3.5043 33 1 1.6578 1.6398 -4.0426 34 1 -1.1994 3.3974 -2.3848 35 1 -0.5288 4.5797 -3.5340 36 1 -2.0596 3.7503 -3.9028 37 1 0.3364 3.8482 -5.7131 38 1 0.4927 2.1175 -6.0986 39 1 -2.8333 3.4144 -9.1593 40 1 3.8978 -0.6229 -0.1249 41 1 6.0723 -0.6864 1.0286 42 1 6.7278 1.1580 2.5226 43 1 5.2120 3.0695 2.8570 44 1 3.0416 3.1375 1.6962 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602517381.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:19 Heat of formation + Delta-G solvation = -51.840795 kcal Electronic energy + Delta-G solvation = -21129.677229 eV Core-core repulsion = 18045.643996 eV Total energy + Delta-G solvation = -3084.033233 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.60426 -38.95150 -37.98974 -35.52270 -34.10297 -32.86149 -31.77049 -29.81028 -28.65884 -27.46250 -26.19661 -24.31663 -23.49139 -23.18283 -21.83162 -20.62060 -18.96568 -17.99312 -17.69532 -16.85422 -16.62988 -16.35448 -16.07373 -15.54520 -15.37862 -15.13656 -15.00206 -14.67812 -14.34898 -14.21554 -13.87990 -13.66596 -13.50603 -13.36870 -13.27221 -12.85140 -12.58980 -12.49114 -12.15168 -12.10723 -11.95735 -11.74899 -11.71402 -11.45236 -11.27950 -11.07495 -10.73638 -10.51880 -9.80356 -9.67144 -9.29598 -8.26211 -6.28309 0.39772 0.52043 1.35818 1.36796 1.48575 2.37366 2.77862 2.92409 3.09100 3.19910 3.92597 3.98971 4.05565 4.15113 4.20810 4.22503 4.26169 4.32761 4.41017 4.50913 4.60073 4.66042 4.72066 4.74143 4.82204 4.86310 4.91661 4.98831 5.05481 5.08266 5.14050 5.18178 5.29208 5.37060 5.54166 5.57582 5.63757 5.64935 5.69389 5.72947 6.02865 6.11330 6.32987 6.35273 6.47235 6.79310 7.35230 8.90515 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.028000 B = 0.003076 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.759657 B = 9101.075576 C = 9526.927866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.392 6.392 3 C 0.139 3.861 4 H 0.077 0.923 5 C 0.047 3.953 6 N -0.686 5.686 7 C 0.076 3.924 8 C -0.070 4.070 9 H 0.053 0.947 10 C -0.128 4.128 11 C -0.007 4.007 12 C -0.517 4.517 13 H 0.036 0.964 14 C 0.001 3.999 15 N -0.954 5.954 16 Si 0.947 3.053 17 H -0.269 1.269 18 H -0.286 1.286 19 H -0.247 1.247 20 C -0.101 4.101 21 C -0.109 4.109 22 C -0.132 4.132 23 C -0.123 4.123 24 C -0.127 4.127 25 C -0.119 4.119 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.046 0.954 29 H 0.067 0.933 30 H 0.044 0.956 31 H 0.344 0.656 32 H 0.033 0.967 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.048 0.952 36 H 0.035 0.965 37 H 0.018 0.982 38 H 0.012 0.988 39 H 0.264 0.736 40 H 0.117 0.883 41 H 0.137 0.863 42 H 0.144 0.856 43 H 0.146 0.854 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.029 -2.290 23.308 28.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.311 6.311 3 C 0.081 3.919 4 H 0.095 0.905 5 C -0.082 4.082 6 N -0.318 5.318 7 C -0.053 4.053 8 C -0.089 4.089 9 H 0.072 0.928 10 C -0.186 4.186 11 C -0.045 4.045 12 C -0.556 4.556 13 H 0.054 0.946 14 C -0.195 4.195 15 N -0.595 5.595 16 Si 0.771 3.229 17 H -0.195 1.195 18 H -0.211 1.211 19 H -0.171 1.171 20 C -0.102 4.102 21 C -0.127 4.127 22 C -0.150 4.150 23 C -0.141 4.141 24 C -0.144 4.144 25 C -0.137 4.137 26 H 0.080 0.920 27 H 0.102 0.898 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.163 0.837 32 H 0.051 0.949 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.036 0.964 38 H 0.031 0.969 39 H 0.073 0.927 40 H 0.135 0.865 41 H 0.155 0.845 42 H 0.162 0.838 43 H 0.163 0.837 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 17.005 -3.090 22.984 28.757 hybrid contribution -0.022 1.096 -0.987 1.476 sum 16.983 -1.993 21.996 27.861 Atomic orbital electron populations 1.22984 0.79740 1.03126 1.01201 1.87837 1.21151 1.27075 1.95053 1.20840 0.91938 0.85666 0.93484 0.90472 1.22471 0.91185 1.00034 0.94540 1.60522 1.13989 1.54593 1.02713 1.21889 0.96520 0.98064 0.88866 1.20880 0.95138 0.98564 0.94320 0.92815 1.21658 0.99860 0.97712 0.99344 1.19562 0.95022 0.96056 0.93836 1.21449 0.93566 1.46154 0.94382 0.94574 1.25991 0.99184 0.95038 0.99289 1.70068 1.25705 1.51763 1.11965 0.85703 0.80145 0.78708 0.78338 1.19473 1.21149 1.17100 1.19801 0.95416 0.96200 0.98748 1.21117 0.94149 0.97838 0.99566 1.21447 0.96430 0.99758 0.97327 1.21526 1.00535 0.93866 0.98186 1.21438 0.93897 0.99211 0.99902 1.21232 0.97878 0.98291 0.96298 0.91993 0.89767 0.93590 0.91409 0.93759 0.83683 0.94904 0.91989 0.91454 0.93275 0.94606 0.96396 0.96932 0.92690 0.86473 0.84478 0.83800 0.83672 0.84606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.69 113.37 1.21 1.76 16 2 O -0.39 -9.66 9.66 -148.98 -1.44 -11.10 16 3 C 0.14 2.93 2.61 29.85 0.08 3.01 16 4 H 0.08 1.41 7.65 -2.39 -0.02 1.39 16 5 C 0.05 1.09 5.33 86.31 0.46 1.55 16 6 N -0.69 -17.64 4.50 -513.88 -2.31 -19.95 16 7 C 0.08 2.32 5.14 86.30 0.44 2.77 16 8 C -0.07 -2.67 2.55 -10.79 -0.03 -2.70 16 9 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 10 C -0.13 -4.49 8.77 71.98 0.63 -3.86 16 11 C -0.01 -0.32 3.52 29.85 0.10 -0.22 16 12 C -0.52 -29.83 8.96 25.60 0.23 -29.61 16 13 H 0.04 2.29 7.30 -2.91 -0.02 2.27 16 14 C 0.00 0.06 5.47 84.66 0.46 0.53 16 15 N -0.95 -60.53 13.96 21.45 0.30 -60.23 16 16 Si 0.95 44.93 27.47 68.60 1.88 46.81 16 17 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 18 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 19 H -0.25 -10.87 6.54 99.48 0.65 -10.22 16 20 C -0.10 -2.05 4.97 -19.87 -0.10 -2.15 16 21 C -0.11 -2.24 9.36 22.27 0.21 -2.03 16 22 C -0.13 -2.21 10.05 22.27 0.22 -1.98 16 23 C -0.12 -1.76 10.05 22.27 0.22 -1.54 16 24 C -0.13 -1.81 10.05 22.27 0.22 -1.59 16 25 C -0.12 -1.99 9.67 22.27 0.22 -1.77 16 26 H 0.06 1.45 6.20 -2.39 -0.01 1.44 16 27 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.05 0.82 8.08 -2.39 -0.02 0.80 16 29 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.34 7.91 6.92 -89.69 -0.62 7.29 16 32 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 34 H 0.07 1.87 6.68 -2.39 -0.02 1.85 16 35 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.03 1.47 6.95 -2.39 -0.02 1.45 16 37 H 0.02 0.82 7.20 -2.39 -0.02 0.80 16 38 H 0.01 0.58 7.57 -2.38 -0.02 0.56 16 39 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 40 H 0.12 2.57 7.77 -2.91 -0.02 2.55 16 41 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 42 H 0.14 1.30 8.06 -2.91 -0.02 1.27 16 43 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 44 H 0.14 1.76 8.04 -2.91 -0.02 1.73 16 Total: -1.00 -67.73 353.35 3.30 -64.43 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.28 Total: 17.88 kcal Atomic # 6 Polarization: -42.43 SS G_CDS: 4.59 Total: -37.83 kcal Atomic # 7 Polarization: -78.17 SS G_CDS: -2.01 Total: -80.18 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -1.44 Total: -11.10 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.88 Total: 46.81 kcal Total: -67.73 3.30 -64.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602517381.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.589 kcal (2) G-P(sol) polarization free energy of solvation -67.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds