Wall clock time and date at job start Mon Mar 30 2020 01:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99893 * 2 1 4 4 H 1.09001 * 109.47353 * 29.99529 * 3 2 1 5 5 C 1.53004 * 109.46911 * 269.99330 * 3 2 1 6 6 N 1.46899 * 109.46737 * 64.99992 * 5 3 2 7 7 C 1.46901 * 110.99727 * 180.02562 * 6 5 3 8 8 C 1.53006 * 109.47113 * 180.02562 * 7 6 5 9 9 H 1.08993 * 109.46955 * 55.00131 * 8 7 6 10 10 C 1.52999 * 109.46626 * 294.99658 * 8 7 6 11 11 C 1.52997 * 109.47127 * 175.00119 * 8 7 6 12 12 C 1.50701 * 109.47348 * 184.99767 * 11 8 7 13 13 H 1.07998 * 119.99454 * 359.97438 * 12 11 8 14 14 C 1.37874 * 120.00255 * 179.97438 * 12 11 8 15 15 N 1.31519 * 119.99765 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 120.00010 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47147 * 89.99766 * 16 14 12 18 18 H 1.48500 * 109.47042 * 209.99738 * 16 14 12 19 19 H 1.48496 * 109.46848 * 329.99514 * 16 14 12 20 20 C 1.50703 * 109.47179 * 149.99722 * 3 2 1 21 21 C 1.38227 * 120.00122 * 39.72657 * 20 3 2 22 22 C 1.38233 * 119.99886 * 179.79021 * 21 20 3 23 23 C 1.38236 * 120.00097 * 0.43574 * 22 21 20 24 24 C 1.38240 * 119.99867 * 359.81531 * 23 22 21 25 25 C 1.38232 * 119.99865 * 359.97438 * 24 23 22 26 26 H 1.08997 * 109.47435 * 300.00140 * 1 2 3 27 27 H 1.09006 * 109.46807 * 60.00895 * 1 2 3 28 28 H 1.09006 * 109.46872 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47266 * 305.00407 * 5 3 2 30 30 H 1.08995 * 109.47170 * 185.00200 * 5 3 2 31 31 H 1.00894 * 111.00369 * 56.04946 * 6 5 3 32 32 H 1.09000 * 109.47283 * 59.99928 * 7 6 5 33 33 H 1.09007 * 109.47373 * 299.99941 * 7 6 5 34 34 H 1.09000 * 109.47160 * 60.00369 * 10 8 7 35 35 H 1.09002 * 109.46719 * 180.02562 * 10 8 7 36 36 H 1.08993 * 109.47839 * 299.99931 * 10 8 7 37 37 H 1.09002 * 109.47196 * 304.99671 * 11 8 7 38 38 H 1.09001 * 109.47630 * 64.99767 * 11 8 7 39 39 H 0.97000 * 119.99505 * 179.97438 * 15 14 12 40 40 H 1.08002 * 120.00106 * 359.97438 * 21 20 3 41 41 H 1.07997 * 120.00165 * 180.26784 * 22 21 20 42 42 H 1.08000 * 120.00211 * 179.83344 * 23 22 21 43 43 H 1.07997 * 120.00007 * 180.02562 * 24 23 22 44 44 H 1.08001 * 119.99911 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2178 1.7713 -1.4426 6 7 0.9130 1.9267 -2.0994 7 6 1.0734 2.3733 -3.4896 8 6 -0.3038 2.5241 -4.1390 9 1 -0.9185 3.1923 -3.5360 10 6 -0.9777 1.1535 -4.2294 11 6 -0.1439 3.1075 -5.5443 12 6 -1.5043 3.3706 -6.1369 13 1 -2.3939 3.1439 -5.5681 14 6 -1.6132 3.9006 -7.4050 15 7 -2.8005 4.1297 -7.9222 16 14 -0.0743 4.2920 -8.3890 17 1 0.3177 3.1035 -9.1884 18 1 -0.3459 5.4333 -9.2994 19 1 1.0285 4.6503 -7.4614 20 6 3.3386 1.2639 0.7105 21 6 4.1871 0.1882 0.5272 22 6 5.4074 0.1522 1.1755 23 6 5.7754 1.1877 2.0142 24 6 4.9245 2.2611 2.2015 25 6 3.7061 2.2991 1.5498 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 2.8100 1.0318 -1.9815 30 1 2.7414 2.7272 -1.4439 31 1 0.3208 2.5590 -1.5822 32 1 1.6576 1.6377 -4.0425 33 1 1.5893 3.3334 -3.5056 34 1 -1.0916 0.7379 -3.2282 35 1 -1.9586 1.2609 -4.6924 36 1 -0.3630 0.4854 -4.8324 37 1 0.4149 4.0417 -5.4885 38 1 0.3952 2.3987 -6.1729 39 1 -2.8770 4.5029 -8.8142 40 1 3.8979 -0.6227 -0.1248 41 1 6.0722 -0.6861 1.0290 42 1 6.7276 1.1583 2.5228 43 1 5.2122 3.0702 2.8563 44 1 3.0416 3.1378 1.6958 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602517383.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:25 Heat of formation + Delta-G solvation = -34.303667 kcal Electronic energy + Delta-G solvation = -21144.556580 eV Core-core repulsion = 18061.283815 eV Total energy + Delta-G solvation = -3083.272766 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.83615 -38.01422 -36.59636 -34.04732 -32.46718 -31.67775 -31.10552 -28.36361 -27.23674 -26.41051 -24.73995 -23.11411 -22.68182 -21.85115 -21.02449 -19.10211 -17.28582 -16.82403 -16.69139 -15.84767 -15.55729 -15.10009 -14.68268 -14.53327 -14.41966 -13.93332 -13.68562 -13.57595 -13.06002 -13.03276 -12.77962 -12.52303 -12.28462 -11.78346 -11.72294 -11.59592 -11.38095 -11.22327 -11.00312 -10.90459 -10.71757 -10.46695 -9.82401 -9.76167 -9.63351 -9.42158 -9.12519 -9.06877 -8.92207 -8.51319 -8.18689 -6.01756 -3.98633 1.08981 1.20211 3.31801 3.39139 3.42610 3.50758 3.74664 4.22250 4.47159 4.66869 4.73514 4.85115 4.92859 4.97995 5.03918 5.29950 5.31945 5.36088 5.42561 5.47290 5.58270 5.67514 5.73835 5.76861 5.83298 5.87555 5.97629 6.05825 6.23033 6.29862 6.31325 6.36528 6.40862 6.58505 6.77205 6.83723 7.02597 7.12925 7.18999 7.21905 7.30886 7.45144 7.54216 7.83174 8.57680 9.03916 9.61282 11.11687 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.027816 B = 0.003101 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.372664 B = 9028.596764 C = 9600.192373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.374 6.374 3 C 0.135 3.865 4 H 0.066 0.934 5 C 0.042 3.958 6 N -0.683 5.683 7 C 0.062 3.938 8 C -0.073 4.073 9 H 0.059 0.941 10 C -0.124 4.124 11 C -0.009 4.009 12 C -0.512 4.512 13 H 0.074 0.926 14 C 0.064 3.936 15 N -0.905 5.905 16 Si 0.878 3.122 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.267 1.267 20 C -0.084 4.084 21 C -0.090 4.090 22 C -0.124 4.124 23 C -0.121 4.121 24 C -0.123 4.123 25 C -0.111 4.111 26 H 0.030 0.970 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.035 0.965 31 H 0.335 0.665 32 H 0.067 0.933 33 H 0.024 0.976 34 H 0.043 0.957 35 H 0.058 0.942 36 H 0.039 0.961 37 H 0.012 0.988 38 H 0.011 0.989 39 H 0.262 0.738 40 H 0.128 0.872 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.586 -6.066 20.803 26.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.293 6.293 3 C 0.077 3.923 4 H 0.084 0.916 5 C -0.088 4.088 6 N -0.313 5.313 7 C -0.067 4.067 8 C -0.092 4.092 9 H 0.077 0.923 10 C -0.181 4.181 11 C -0.047 4.047 12 C -0.550 4.550 13 H 0.092 0.908 14 C -0.136 4.136 15 N -0.545 5.545 16 Si 0.706 3.294 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.192 1.192 20 C -0.085 4.085 21 C -0.108 4.108 22 C -0.142 4.142 23 C -0.139 4.139 24 C -0.141 4.141 25 C -0.129 4.129 26 H 0.048 0.952 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.152 0.848 32 H 0.086 0.914 33 H 0.042 0.958 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.030 0.970 38 H 0.030 0.970 39 H 0.072 0.928 40 H 0.146 0.854 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 14.557 -6.834 20.458 26.022 hybrid contribution 0.848 1.457 -0.553 1.774 sum 15.405 -5.376 19.905 25.738 Atomic orbital electron populations 1.22955 0.80309 1.02596 1.01112 1.87846 1.20422 1.26004 1.95030 1.20837 0.91292 0.86056 0.94146 0.91646 1.22508 0.92240 0.99980 0.94069 1.60561 1.12812 1.54375 1.03597 1.22193 0.99139 0.97658 0.87667 1.21007 0.93089 0.97473 0.97650 0.92261 1.21598 1.00936 0.95829 0.99745 1.19612 0.97896 0.95219 0.91992 1.21129 0.92041 1.41402 1.00455 0.90829 1.25031 0.95685 0.95266 0.97630 1.69918 1.22597 1.45329 1.16626 0.86802 0.84268 0.78135 0.80194 1.20348 1.21505 1.19167 1.19747 0.95572 0.95409 0.97752 1.21054 0.93136 0.97753 0.98814 1.21199 0.96744 0.98828 0.97466 1.21176 0.99589 0.94394 0.98731 1.21086 0.94374 0.98576 1.00102 1.20996 0.97105 0.98256 0.96581 0.95159 0.90748 0.90320 0.90151 0.94642 0.84791 0.91440 0.95773 0.93783 0.92254 0.94192 0.96986 0.97043 0.92837 0.85371 0.86025 0.86203 0.86035 0.86096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.69 101.05 1.08 1.37 16 2 O -0.37 -4.68 9.66 -35.23 -0.34 -5.02 16 3 C 0.14 1.50 2.62 -27.88 -0.07 1.43 16 4 H 0.07 0.66 7.65 -51.93 -0.40 0.27 16 5 C 0.04 0.50 5.33 -3.82 -0.02 0.48 16 6 N -0.68 -9.14 3.96 -113.77 -0.45 -9.59 16 7 C 0.06 1.00 5.07 -3.82 -0.02 0.98 16 8 C -0.07 -1.42 2.48 -90.62 -0.22 -1.64 16 9 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 10 C -0.12 -2.33 8.89 37.16 0.33 -2.00 16 11 C -0.01 -0.22 3.52 -27.88 -0.10 -0.32 16 12 C -0.51 -14.45 8.96 -34.44 -0.31 -14.76 16 13 H 0.07 2.22 7.30 -52.49 -0.38 1.84 16 14 C 0.06 1.88 5.47 -17.82 -0.10 1.79 16 15 N -0.91 -28.01 13.96 55.43 0.77 -27.23 16 16 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 20 C -0.08 -0.90 4.97 -104.62 -0.52 -1.43 16 21 C -0.09 -0.95 9.36 -39.59 -0.37 -1.32 16 22 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 23 C -0.12 -1.02 10.05 -39.58 -0.40 -1.41 16 24 C -0.12 -1.06 10.05 -39.58 -0.40 -1.45 16 25 C -0.11 -1.06 9.67 -39.58 -0.38 -1.44 16 26 H 0.03 0.29 8.08 -51.93 -0.42 -0.13 16 27 H 0.07 0.88 6.20 -51.93 -0.32 0.56 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.33 4.16 8.66 -39.29 -0.34 3.82 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.04 0.73 7.75 -51.93 -0.40 0.33 16 35 H 0.06 1.25 6.95 -51.93 -0.36 0.88 16 36 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.01 0.29 7.20 -51.93 -0.37 -0.09 16 38 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 39 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.13 1.37 7.77 -52.49 -0.41 0.96 16 41 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 42 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 44 H 0.12 0.95 8.04 -52.49 -0.42 0.53 16 LS Contribution 355.61 15.07 5.36 5.36 Total: -1.00 -30.94 355.61 -8.84 -39.79 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -7.62 Total: 0.72 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: -1.90 Total: -21.26 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.32 Total: -36.82 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.34 Total: -5.02 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.94 -8.84 -39.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602517383.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.483 kcal (2) G-P(sol) polarization free energy of solvation -30.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds