Wall clock time and date at job start Mon Mar 30 2020 01:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99981 * 2 1 4 4 H 1.09001 * 109.46888 * 30.00600 * 3 2 1 5 5 C 1.53007 * 109.46633 * 150.00105 * 3 2 1 6 6 N 1.46891 * 109.47100 * 299.99934 * 5 3 2 7 7 C 1.46900 * 110.99776 * 179.97438 * 6 5 3 8 8 C 1.53006 * 109.47303 * 180.02562 * 7 6 5 9 9 H 1.08998 * 109.46505 * 304.99837 * 8 7 6 10 10 C 1.52997 * 109.47127 * 64.99966 * 8 7 6 11 11 C 1.52992 * 109.47223 * 185.00471 * 8 7 6 12 12 C 1.50697 * 109.47463 * 174.99857 * 11 8 7 13 13 H 1.08007 * 119.99713 * 0.02562 * 12 11 8 14 14 C 1.37879 * 120.00558 * 179.97438 * 12 11 8 15 15 N 1.31509 * 119.99821 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00224 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46887 * 59.99783 * 16 14 12 18 18 H 1.48492 * 109.47137 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47042 * 300.00308 * 16 14 12 20 20 C 1.50693 * 109.47532 * 270.00232 * 3 2 1 21 21 C 1.38236 * 120.00101 * 324.73193 * 20 3 2 22 22 C 1.38238 * 120.00347 * 179.81236 * 21 20 3 23 23 C 1.38239 * 119.99447 * 0.39007 * 22 21 20 24 24 C 1.38228 * 120.00181 * 359.86127 * 23 22 21 25 25 C 1.38234 * 120.00151 * 145.00340 * 20 3 2 26 26 H 1.08993 * 109.47335 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46940 * 299.99558 * 1 2 3 28 28 H 1.09004 * 109.46909 * 59.99485 * 1 2 3 29 29 H 1.09008 * 109.46480 * 180.02562 * 5 3 2 30 30 H 1.09001 * 109.47078 * 60.00612 * 5 3 2 31 31 H 1.00900 * 111.00730 * 303.95292 * 6 5 3 32 32 H 1.09007 * 109.47006 * 60.00373 * 7 6 5 33 33 H 1.08996 * 109.47541 * 300.00579 * 7 6 5 34 34 H 1.09002 * 109.47153 * 180.02562 * 10 8 7 35 35 H 1.09001 * 109.46832 * 60.00321 * 10 8 7 36 36 H 1.09004 * 109.47261 * 300.00303 * 10 8 7 37 37 H 1.09002 * 109.46906 * 294.99936 * 11 8 7 38 38 H 1.09006 * 109.47717 * 54.99311 * 11 8 7 39 39 H 0.97002 * 120.00259 * 179.97438 * 15 14 12 40 40 H 1.08007 * 119.99801 * 359.97438 * 21 20 3 41 41 H 1.07997 * 120.00145 * 180.23085 * 22 21 20 42 42 H 1.08001 * 119.99622 * 179.84067 * 23 22 21 43 43 H 1.08005 * 119.99835 * 179.97438 * 24 23 22 44 44 H 1.07999 * 120.00026 * 359.97303 * 25 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 3.3590 1.2631 0.7213 6 7 3.1598 0.8158 2.1062 7 6 4.4365 0.7623 2.8309 8 6 4.1891 0.2927 4.2659 9 1 3.4487 0.9391 4.7371 10 6 3.6725 -1.1473 4.2494 11 6 5.4977 0.3561 5.0560 12 6 5.2308 0.0118 6.4986 13 1 4.2280 -0.2286 6.8198 14 6 6.2668 0.0027 7.4084 15 7 7.4879 0.2949 7.0172 16 14 5.9357 -0.4234 9.1967 17 1 5.3708 -1.7941 9.2826 18 1 7.2061 -0.3632 9.9633 19 1 4.9671 0.5477 9.7658 20 6 2.2146 1.7645 -1.4207 21 6 2.5649 0.8520 -2.3983 22 6 2.7486 1.2724 -3.7023 23 6 2.5897 2.6066 -4.0272 24 6 2.2444 3.5199 -3.0487 25 6 2.0571 3.0989 -1.7454 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 3.8021 2.2591 0.7217 30 1 4.0242 0.5693 0.2073 31 1 2.4963 1.4061 2.5851 32 1 4.8878 1.7545 2.8455 33 1 5.1089 0.0648 2.3315 34 1 3.4958 -1.4817 5.2717 35 1 4.4130 -1.7936 3.7782 36 1 2.7401 -1.1924 3.6865 37 1 6.2093 -0.3561 4.6381 38 1 5.9118 1.3625 4.9932 39 1 8.2168 0.2889 7.6573 40 1 2.6926 -0.1898 -2.1437 41 1 3.0186 0.5589 -4.4667 42 1 2.7356 2.9355 -5.0455 43 1 2.1207 4.5624 -3.3025 44 1 1.7872 3.8124 -0.9809 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602517384.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:27 Heat of formation + Delta-G solvation = -56.434287 kcal Electronic energy + Delta-G solvation = -20990.742424 eV Core-core repulsion = 17906.510003 eV Total energy + Delta-G solvation = -3084.232421 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.63058 -38.74440 -37.97523 -35.64763 -34.07156 -32.66727 -31.76252 -29.53704 -28.54006 -27.21136 -26.26575 -24.57876 -23.53199 -23.28054 -21.84102 -20.70435 -18.49170 -18.05541 -17.65649 -16.71416 -16.48395 -16.46463 -16.07862 -15.51715 -15.36869 -15.31413 -14.91708 -14.54640 -14.23212 -14.19425 -13.91082 -13.61525 -13.37082 -13.26560 -13.06601 -12.73096 -12.58437 -12.50788 -12.20397 -12.16788 -12.05714 -11.95459 -11.67300 -11.47770 -11.08396 -10.95193 -10.52913 -10.51934 -9.81542 -9.68325 -9.29055 -8.16451 -6.25711 0.39545 0.50920 1.40650 1.43729 1.51338 2.42903 2.80998 2.88102 3.16782 3.20772 3.90400 3.96939 4.08020 4.16191 4.22304 4.25425 4.31569 4.33914 4.53446 4.55133 4.57653 4.61076 4.66318 4.73203 4.86733 4.90374 4.92834 4.96156 5.04746 5.08099 5.16939 5.29977 5.47973 5.51891 5.56011 5.57357 5.62770 5.63968 5.82310 5.89818 6.03526 6.11280 6.31674 6.35206 6.53712 6.90156 7.42444 8.95579 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.033043 B = 0.002827 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.174897 B = 9902.892075 C =10331.901573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.381 6.381 3 C 0.141 3.859 4 H 0.078 0.922 5 C 0.070 3.930 6 N -0.676 5.676 7 C 0.078 3.922 8 C -0.072 4.072 9 H 0.056 0.944 10 C -0.111 4.111 11 C 0.032 3.968 12 C -0.529 4.529 13 H 0.062 0.938 14 C -0.003 4.003 15 N -0.936 5.936 16 Si 0.962 3.038 17 H -0.268 1.268 18 H -0.285 1.285 19 H -0.266 1.266 20 C -0.123 4.123 21 C -0.109 4.109 22 C -0.131 4.131 23 C -0.124 4.124 24 C -0.128 4.128 25 C -0.121 4.121 26 H 0.091 0.909 27 H 0.048 0.952 28 H 0.041 0.959 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.342 0.658 32 H 0.020 0.980 33 H 0.057 0.943 34 H 0.038 0.962 35 H 0.031 0.969 36 H 0.066 0.934 37 H -0.012 1.012 38 H -0.013 1.013 39 H 0.262 0.738 40 H 0.118 0.882 41 H 0.137 0.863 42 H 0.143 0.857 43 H 0.143 0.857 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.756 5.296 -21.643 26.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.300 6.300 3 C 0.082 3.918 4 H 0.096 0.904 5 C -0.059 4.059 6 N -0.307 5.307 7 C -0.051 4.051 8 C -0.091 4.091 9 H 0.075 0.925 10 C -0.169 4.169 11 C -0.005 4.005 12 C -0.567 4.567 13 H 0.080 0.920 14 C -0.200 4.200 15 N -0.577 5.577 16 Si 0.786 3.214 17 H -0.193 1.193 18 H -0.210 1.210 19 H -0.191 1.191 20 C -0.124 4.124 21 C -0.127 4.127 22 C -0.149 4.149 23 C -0.142 4.142 24 C -0.146 4.146 25 C -0.139 4.139 26 H 0.110 0.890 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.161 0.839 32 H 0.038 0.962 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.084 0.916 37 H 0.006 0.994 38 H 0.005 0.995 39 H 0.071 0.929 40 H 0.136 0.864 41 H 0.155 0.845 42 H 0.161 0.839 43 H 0.161 0.839 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.466 4.467 -21.745 26.497 hybrid contribution 0.488 0.881 1.129 1.513 sum -13.979 5.348 -20.616 25.476 Atomic orbital electron populations 1.22865 0.80325 1.03348 1.00108 1.87985 1.20508 1.26787 1.94722 1.20880 0.94457 0.85421 0.90997 0.90403 1.21995 0.95921 0.98887 0.89130 1.60329 1.10934 1.57536 1.01951 1.21846 0.90921 0.98356 0.93962 1.20996 0.97439 0.97403 0.93261 0.92547 1.21467 1.00104 0.95226 1.00084 1.19012 0.92849 0.94357 0.94306 1.21619 0.94447 1.45854 0.94821 0.92027 1.25967 0.94905 0.95422 1.03741 1.70098 1.00673 1.50582 1.36376 0.85552 0.77447 0.79195 0.79181 1.19273 1.21040 1.19122 1.20434 1.01573 0.94503 0.95925 1.21109 0.98509 0.99842 0.93257 1.21444 1.00192 0.96913 0.96367 1.21514 0.98934 0.93204 1.00542 1.21440 0.99534 1.00814 0.92765 1.21259 1.00173 0.94858 0.97600 0.89014 0.93356 0.94043 0.93475 0.91628 0.83942 0.96199 0.92462 0.94328 0.94973 0.91554 0.99372 0.99505 0.92943 0.86363 0.84528 0.83912 0.83895 0.84835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.81 113.37 1.23 1.77 16 2 O -0.38 -9.25 9.37 -148.98 -1.40 -10.64 16 3 C 0.14 3.04 2.52 29.85 0.08 3.12 16 4 H 0.08 1.46 7.70 -2.39 -0.02 1.44 16 5 C 0.07 1.77 5.36 86.31 0.46 2.23 16 6 N -0.68 -19.65 5.82 -513.87 -2.99 -22.64 16 7 C 0.08 2.79 5.07 86.31 0.44 3.23 16 8 C -0.07 -3.02 2.48 -10.79 -0.03 -3.04 16 9 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 10 C -0.11 -4.44 8.89 71.98 0.64 -3.80 16 11 C 0.03 1.74 4.45 29.84 0.13 1.87 16 12 C -0.53 -30.38 8.41 25.60 0.22 -30.16 16 13 H 0.06 3.39 7.06 -2.91 -0.02 3.37 16 14 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 15 N -0.94 -58.07 13.29 21.45 0.28 -57.79 16 16 Si 0.96 44.95 29.54 68.60 2.03 46.97 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 18 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 20 C -0.12 -2.52 4.96 -19.87 -0.10 -2.62 16 21 C -0.11 -2.26 9.35 22.27 0.21 -2.05 16 22 C -0.13 -2.25 10.05 22.27 0.22 -2.02 16 23 C -0.12 -1.85 10.05 22.27 0.22 -1.62 16 24 C -0.13 -1.92 10.05 22.27 0.22 -1.70 16 25 C -0.12 -2.10 9.68 22.27 0.22 -1.88 16 26 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.05 0.80 8.09 -2.39 -0.02 0.78 16 28 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.34 9.02 8.73 -89.69 -0.78 8.24 16 32 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.04 1.62 6.95 -2.39 -0.02 1.60 16 35 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.07 2.34 7.75 -2.38 -0.02 2.32 16 37 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 38 H -0.01 -0.78 8.14 -2.38 -0.02 -0.80 16 39 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 40 H 0.12 2.61 7.64 -2.91 -0.02 2.59 16 41 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 42 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 43 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 44 H 0.13 1.86 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -66.93 362.79 2.71 -64.22 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.16 Total: 16.30 kcal Atomic # 6 Polarization: -41.04 SS G_CDS: 4.62 Total: -36.42 kcal Atomic # 7 Polarization: -77.72 SS G_CDS: -2.71 Total: -80.43 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: -1.40 Total: -10.64 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -66.93 2.71 -64.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602517384.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.784 kcal (2) G-P(sol) polarization free energy of solvation -66.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds