Wall clock time and date at job start Mon Mar 30 2020 01:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35898 * 117.00484 * 2 1 4 4 C 1.38757 * 120.05474 * 0.02562 * 3 2 1 5 5 C 1.38122 * 119.94500 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.05316 * 359.75264 * 5 4 3 7 7 C 1.38246 * 120.11124 * 0.50664 * 6 5 4 8 8 C 1.50703 * 119.97039 * 179.76893 * 7 6 5 9 9 H 1.09002 * 109.47152 * 199.72207 * 8 7 6 10 10 C 1.53002 * 109.46966 * 79.72348 * 8 7 6 11 11 N 1.46899 * 109.47107 * 319.72120 * 8 7 6 12 12 C 1.46897 * 111.00355 * 204.99940 * 11 8 7 13 13 C 1.52994 * 109.47637 * 180.02562 * 12 11 8 14 14 H 1.09003 * 109.46824 * 305.00320 * 13 12 11 15 15 C 1.53003 * 109.46986 * 64.99713 * 13 12 11 16 16 C 1.52995 * 109.47524 * 185.00264 * 13 12 11 17 17 C 1.50703 * 109.47292 * 175.00011 * 16 13 12 18 18 H 1.07988 * 120.00066 * 0.02562 * 17 16 13 19 19 C 1.37879 * 119.99896 * 179.97438 * 17 16 13 20 20 N 1.31517 * 119.99948 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00006 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47145 * 59.99914 * 21 19 17 23 23 H 1.48492 * 109.47172 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47072 * 300.00119 * 21 19 17 25 25 C 1.38163 * 120.05581 * 359.49033 * 7 6 5 26 26 H 1.08992 * 109.47314 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46589 * 300.00620 * 1 2 3 28 28 H 1.08999 * 109.46947 * 59.99928 * 1 2 3 29 29 H 1.08004 * 120.02489 * 0.02562 * 4 3 2 30 30 H 1.07991 * 119.96995 * 180.02562 * 5 4 3 31 31 H 1.07996 * 119.94033 * 180.27476 * 6 5 4 32 32 H 1.09002 * 109.47075 * 299.99352 * 10 8 7 33 33 H 1.08996 * 109.47407 * 60.00310 * 10 8 7 34 34 H 1.09000 * 109.46986 * 180.02562 * 10 8 7 35 35 H 1.00901 * 110.99869 * 81.04630 * 11 8 7 36 36 H 1.09006 * 109.46948 * 300.00869 * 12 11 8 37 37 H 1.09006 * 109.47033 * 59.99701 * 12 11 8 38 38 H 1.08998 * 109.47223 * 180.02562 * 15 13 12 39 39 H 1.08992 * 109.47539 * 300.00502 * 15 13 12 40 40 H 1.09003 * 109.46844 * 60.00619 * 15 13 12 41 41 H 1.09002 * 109.47029 * 294.99692 * 16 13 12 42 42 H 1.09000 * 109.46875 * 54.99770 * 16 13 12 43 43 H 0.96999 * 120.00260 * 179.97438 * 20 19 17 44 44 H 1.08006 * 120.02900 * 180.27813 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2916 2.3753 0.0005 5 6 1.9211 3.6047 0.0011 6 6 3.3022 3.6756 0.0062 7 6 4.0561 2.5169 0.0003 8 6 5.5610 2.5979 0.0007 9 1 5.9758 1.6532 -0.3509 10 6 6.0564 2.8750 1.4215 11 7 5.9931 3.6838 -0.8892 12 6 7.3553 3.4472 -1.3856 13 6 7.7695 4.5967 -2.3063 14 1 7.0312 4.7106 -3.1001 15 6 7.8529 5.8930 -1.4978 16 6 9.1365 4.2904 -2.9213 17 6 9.4892 5.3618 -3.9208 18 1 8.8068 6.1795 -4.0992 19 6 10.6836 5.2984 -4.6068 20 7 11.5153 4.3032 -4.3884 21 14 11.1204 6.6259 -5.8462 22 1 11.1682 7.9439 -5.1636 23 1 12.4478 6.3293 -6.4421 24 1 10.0927 6.6603 -6.9176 25 6 3.4312 1.2847 -0.0002 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.2129 2.3204 0.0014 30 1 1.3343 4.5113 0.0019 31 1 3.7925 4.6379 0.0111 32 1 5.6417 3.8197 1.7731 33 1 5.7358 2.0692 2.0818 34 1 7.1448 2.9340 1.4217 35 1 5.9272 4.5782 -0.4267 36 1 8.0444 3.3905 -0.5429 37 1 7.3820 2.5092 -1.9403 38 1 8.1476 6.7121 -2.1537 39 1 6.8791 6.1113 -1.0596 40 1 8.5912 5.7792 -0.7040 41 1 9.8911 4.2645 -2.1351 42 1 9.1008 3.3232 -3.4227 43 1 12.3554 4.2584 -4.8712 44 1 4.0207 0.3797 -0.0003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602521650.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:51 Heat of formation + Delta-G solvation = -33.712504 kcal Electronic energy + Delta-G solvation = -20983.206759 eV Core-core repulsion = 17899.959628 eV Total energy + Delta-G solvation = -3083.247131 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.28882 -38.37333 -36.74569 -34.59972 -32.36834 -31.07492 -30.08725 -28.71943 -27.46662 -26.78153 -25.32496 -23.50304 -22.70655 -22.07500 -20.43843 -19.02512 -17.80020 -16.49559 -16.33517 -15.97380 -15.91964 -15.30083 -14.80764 -14.55874 -14.32268 -13.68064 -13.61705 -13.35142 -13.16983 -12.72377 -12.58685 -12.46513 -12.20873 -11.97114 -11.74183 -11.39722 -11.38665 -11.33149 -11.11783 -10.86639 -10.75598 -10.72658 -10.31434 -10.17539 -9.69700 -9.14639 -8.97137 -8.85524 -8.30288 -8.24425 -8.10825 -5.95172 -3.96250 1.27075 1.42747 3.08642 3.36183 3.40491 3.43055 3.70352 4.41595 4.52290 4.67082 4.73069 4.87362 4.89583 4.99438 5.08084 5.19302 5.23092 5.34963 5.40514 5.44061 5.47971 5.67440 5.79810 5.83076 5.87432 5.95908 6.04228 6.10024 6.21384 6.30061 6.41123 6.48007 6.57709 6.58715 6.71510 6.98541 7.13047 7.20107 7.27603 7.39738 7.66493 7.72747 7.89017 8.05212 8.49049 9.09942 9.66931 11.16347 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030270 B = 0.002838 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.800225 B = 9862.796352 C = 9933.705804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.123 3.877 4 C -0.216 4.216 5 C -0.083 4.083 6 C -0.133 4.133 7 C -0.021 4.021 8 C 0.118 3.882 9 H 0.087 0.913 10 C -0.177 4.177 11 N -0.681 5.681 12 C 0.065 3.935 13 C -0.084 4.084 14 H 0.065 0.935 15 C -0.134 4.134 16 C 0.028 3.972 17 C -0.513 4.513 18 H 0.055 0.945 19 C 0.055 3.945 20 N -0.897 5.897 21 Si 0.890 3.110 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.277 1.277 25 C -0.149 4.149 26 H 0.097 0.903 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.339 0.661 36 H 0.025 0.975 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.031 0.969 40 H 0.041 0.959 41 H 0.014 0.986 42 H 0.015 0.985 43 H 0.260 0.740 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.540 -5.276 12.715 24.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.078 3.922 4 C -0.235 4.235 5 C -0.101 4.101 6 C -0.152 4.152 7 C -0.021 4.021 8 C 0.008 3.992 9 H 0.105 0.895 10 C -0.235 4.235 11 N -0.312 5.312 12 C -0.064 4.064 13 C -0.103 4.103 14 H 0.084 0.916 15 C -0.191 4.191 16 C -0.009 4.009 17 C -0.551 4.551 18 H 0.074 0.926 19 C -0.146 4.146 20 N -0.537 5.537 21 Si 0.718 3.282 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.168 4.168 26 H 0.116 0.884 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.141 0.859 30 H 0.140 0.860 31 H 0.141 0.859 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.158 0.842 36 H 0.044 0.956 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.050 0.950 40 H 0.060 0.940 41 H 0.032 0.968 42 H 0.033 0.967 43 H 0.069 0.931 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -20.571 -5.806 12.098 24.561 hybrid contribution 0.564 1.011 0.035 1.158 sum -20.007 -4.795 12.133 23.885 Atomic orbital electron populations 1.23014 0.78657 1.03708 1.01247 1.86060 1.21165 1.27190 1.88967 1.18935 0.92213 0.84002 0.97036 1.21155 0.99674 0.92519 1.10108 1.20910 0.94690 0.96799 0.97687 1.20850 0.93250 0.98407 1.02661 1.19632 0.95235 0.92025 0.95252 1.20469 0.90313 0.96899 0.91558 0.89469 1.22473 1.01698 1.02183 0.97189 1.60665 1.26431 1.04137 1.39985 1.22180 0.86394 1.00355 0.97450 1.21218 1.00365 0.92383 0.96319 0.91634 1.21740 0.98473 0.99208 0.99676 1.19104 0.89719 0.96846 0.95264 1.21202 1.03053 1.08863 1.21992 0.92633 1.25020 0.96589 0.95780 0.97168 1.69956 1.10271 1.31045 1.42435 0.86692 0.77496 0.82277 0.81727 1.20333 1.21397 1.20276 1.20238 0.91233 0.98194 1.07132 0.88424 0.92834 0.92712 0.85923 0.86009 0.85868 0.92309 0.92081 0.91896 0.84165 0.95638 0.91415 0.91895 0.95026 0.94031 0.96768 0.96661 0.93058 0.85444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.57 10.50 -19.42 -0.20 -3.78 16 3 C 0.12 1.47 6.69 -39.22 -0.26 1.21 16 4 C -0.22 -2.28 9.04 -39.43 -0.36 -2.64 16 5 C -0.08 -0.88 10.04 -39.61 -0.40 -1.28 16 6 C -0.13 -1.58 9.32 -39.56 -0.37 -1.94 16 7 C -0.02 -0.26 4.95 -104.65 -0.52 -0.78 16 8 C 0.12 1.49 2.79 -68.86 -0.19 1.30 16 9 H 0.09 1.13 7.66 -51.93 -0.40 0.73 16 10 C -0.18 -1.93 9.14 37.16 0.34 -1.60 16 11 N -0.68 -9.90 5.71 -107.95 -0.62 -10.51 16 12 C 0.06 1.11 4.94 -3.83 -0.02 1.09 16 13 C -0.08 -1.71 2.54 -90.62 -0.23 -1.94 16 14 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 15 C -0.13 -2.47 8.77 37.16 0.33 -2.14 16 16 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 17 C -0.51 -14.42 8.41 -34.44 -0.29 -14.71 16 18 H 0.06 1.52 7.05 -52.49 -0.37 1.15 16 19 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 20 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 21 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C -0.15 -1.86 9.61 -39.44 -0.38 -2.24 16 26 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 28 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 29 H 0.12 1.00 6.30 -52.48 -0.33 0.67 16 30 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 31 H 0.12 1.37 7.25 -52.49 -0.38 0.99 16 32 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.72 7.45 -51.93 -0.39 0.33 16 35 H 0.34 4.60 6.07 -39.29 -0.24 4.36 16 36 H 0.03 0.43 7.44 -51.93 -0.39 0.04 16 37 H 0.07 1.22 8.06 -51.93 -0.42 0.80 16 38 H 0.06 1.26 6.95 -51.93 -0.36 0.90 16 39 H 0.03 0.48 6.68 -51.93 -0.35 0.14 16 40 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.13 1.48 8.04 -52.48 -0.42 1.06 16 LS Contribution 353.92 15.07 5.33 5.33 Total: -1.00 -30.99 353.92 -8.70 -39.69 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -7.35 Total: 1.24 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: -1.58 Total: -22.38 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.12 Total: -36.92 kcal Atomic # 8 Polarization: -3.57 SS G_CDS: -0.20 Total: -3.78 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.99 -8.70 -39.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602521650.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.975 kcal (2) G-P(sol) polarization free energy of solvation -30.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds