Wall clock time and date at job start Mon Mar 30 2020 01:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35898 * 117.00484 * 2 1 4 4 C 1.38757 * 120.05474 * 0.02562 * 3 2 1 5 5 C 1.38122 * 119.94500 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.05316 * 359.75264 * 5 4 3 7 7 C 1.38246 * 120.11124 * 0.50664 * 6 5 4 8 8 C 1.50703 * 119.97039 * 179.76893 * 7 6 5 9 9 H 1.09002 * 109.47152 * 199.72207 * 8 7 6 10 10 C 1.53002 * 109.46966 * 79.72348 * 8 7 6 11 11 N 1.46899 * 109.47107 * 319.72120 * 8 7 6 12 12 C 1.46897 * 111.00355 * 204.99940 * 11 8 7 13 13 C 1.52994 * 109.47637 * 180.02562 * 12 11 8 14 14 H 1.09003 * 109.46824 * 305.00320 * 13 12 11 15 15 C 1.53003 * 109.46986 * 64.99713 * 13 12 11 16 16 C 1.52995 * 109.47524 * 185.00264 * 13 12 11 17 17 C 1.50703 * 109.47292 * 175.00011 * 16 13 12 18 18 H 1.07988 * 120.00066 * 0.02562 * 17 16 13 19 19 C 1.37879 * 119.99896 * 179.97438 * 17 16 13 20 20 N 1.31517 * 119.99948 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00006 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47145 * 59.99914 * 21 19 17 23 23 H 1.48492 * 109.47172 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47072 * 300.00119 * 21 19 17 25 25 C 1.38163 * 120.05581 * 359.49033 * 7 6 5 26 26 H 1.08992 * 109.47314 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46589 * 300.00620 * 1 2 3 28 28 H 1.08999 * 109.46947 * 59.99928 * 1 2 3 29 29 H 1.08004 * 120.02489 * 0.02562 * 4 3 2 30 30 H 1.07991 * 119.96995 * 180.02562 * 5 4 3 31 31 H 1.07996 * 119.94033 * 180.27476 * 6 5 4 32 32 H 1.09002 * 109.47075 * 299.99352 * 10 8 7 33 33 H 1.08996 * 109.47407 * 60.00310 * 10 8 7 34 34 H 1.09000 * 109.46986 * 180.02562 * 10 8 7 35 35 H 1.00901 * 110.99869 * 81.04630 * 11 8 7 36 36 H 1.09006 * 109.46948 * 300.00869 * 12 11 8 37 37 H 1.09006 * 109.47033 * 59.99701 * 12 11 8 38 38 H 1.08998 * 109.47223 * 180.02562 * 15 13 12 39 39 H 1.08992 * 109.47539 * 300.00502 * 15 13 12 40 40 H 1.09003 * 109.46844 * 60.00619 * 15 13 12 41 41 H 1.09002 * 109.47029 * 294.99692 * 16 13 12 42 42 H 1.09000 * 109.46875 * 54.99770 * 16 13 12 43 43 H 0.96999 * 120.00260 * 179.97438 * 20 19 17 44 44 H 1.08006 * 120.02900 * 180.27813 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2916 2.3753 0.0005 5 6 1.9211 3.6047 0.0011 6 6 3.3022 3.6756 0.0062 7 6 4.0561 2.5169 0.0003 8 6 5.5610 2.5979 0.0007 9 1 5.9758 1.6532 -0.3509 10 6 6.0564 2.8750 1.4215 11 7 5.9931 3.6838 -0.8892 12 6 7.3553 3.4472 -1.3856 13 6 7.7695 4.5967 -2.3063 14 1 7.0312 4.7106 -3.1001 15 6 7.8529 5.8930 -1.4978 16 6 9.1365 4.2904 -2.9213 17 6 9.4892 5.3618 -3.9208 18 1 8.8068 6.1795 -4.0992 19 6 10.6836 5.2984 -4.6068 20 7 11.5153 4.3032 -4.3884 21 14 11.1204 6.6259 -5.8462 22 1 11.1682 7.9439 -5.1636 23 1 12.4478 6.3293 -6.4421 24 1 10.0927 6.6603 -6.9176 25 6 3.4312 1.2847 -0.0002 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.2129 2.3204 0.0014 30 1 1.3343 4.5113 0.0019 31 1 3.7925 4.6379 0.0111 32 1 5.6417 3.8197 1.7731 33 1 5.7358 2.0692 2.0818 34 1 7.1448 2.9340 1.4217 35 1 5.9272 4.5782 -0.4267 36 1 8.0444 3.3905 -0.5429 37 1 7.3820 2.5092 -1.9403 38 1 8.1476 6.7121 -2.1537 39 1 6.8791 6.1113 -1.0596 40 1 8.5912 5.7792 -0.7040 41 1 9.8911 4.2645 -2.1351 42 1 9.1008 3.3232 -3.4227 43 1 12.3554 4.2584 -4.8712 44 1 4.0207 0.3797 -0.0003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602521650.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:50 Heat of formation + Delta-G solvation = -51.607760 kcal Electronic energy + Delta-G solvation = -20983.982756 eV Core-core repulsion = 17899.959628 eV Total energy + Delta-G solvation = -3084.023127 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.11163 -39.36364 -37.97094 -36.06759 -34.28581 -32.12366 -31.12580 -29.73675 -28.64235 -28.08348 -26.82336 -24.83969 -23.81934 -23.34385 -21.37013 -20.65603 -18.72723 -18.46483 -17.20177 -16.93033 -16.63281 -16.55281 -16.51825 -15.74528 -15.63427 -14.85299 -14.65474 -14.38468 -14.36296 -14.18381 -13.90797 -13.53797 -13.28072 -13.22943 -13.05604 -12.85197 -12.73479 -12.56991 -12.32435 -12.29194 -12.15112 -11.88474 -11.86277 -11.60556 -11.47579 -11.05160 -10.91535 -10.51577 -9.76943 -9.29357 -9.08480 -8.16063 -6.25107 0.41033 0.56453 1.40771 1.43646 1.51237 2.38274 2.43286 2.82957 3.17259 3.31446 3.81780 3.93141 4.10143 4.19218 4.22757 4.28076 4.35534 4.37757 4.41146 4.48462 4.50758 4.60703 4.65054 4.73845 4.74652 4.87005 4.93782 4.94878 5.06941 5.10668 5.19956 5.27523 5.38209 5.40794 5.51265 5.55877 5.57203 5.68592 5.83423 5.88774 5.91503 6.13508 6.33103 6.50712 6.54037 6.90898 7.42967 8.95855 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030270 B = 0.002838 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.800225 B = 9862.796352 C = 9933.705804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.340 6.340 3 C 0.112 3.888 4 C -0.216 4.216 5 C -0.083 4.083 6 C -0.145 4.145 7 C -0.031 4.031 8 C 0.120 3.880 9 H 0.077 0.923 10 C -0.170 4.170 11 N -0.680 5.680 12 C 0.079 3.921 13 C -0.075 4.075 14 H 0.054 0.946 15 C -0.126 4.126 16 C 0.033 3.967 17 C -0.529 4.529 18 H 0.061 0.939 19 C -0.003 4.003 20 N -0.936 5.936 21 Si 0.961 3.039 22 H -0.266 1.266 23 H -0.285 1.285 24 H -0.269 1.269 25 C -0.169 4.169 26 H 0.116 0.884 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.148 0.852 30 H 0.148 0.852 31 H 0.130 0.870 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.347 0.653 36 H 0.028 0.972 37 H 0.053 0.947 38 H 0.044 0.956 39 H 0.067 0.933 40 H 0.041 0.959 41 H -0.009 1.009 42 H -0.015 1.015 43 H 0.262 0.738 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.601 -3.942 13.227 26.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.255 6.255 3 C 0.067 3.933 4 C -0.234 4.234 5 C -0.101 4.101 6 C -0.164 4.164 7 C -0.032 4.032 8 C 0.010 3.990 9 H 0.096 0.904 10 C -0.228 4.228 11 N -0.312 5.312 12 C -0.050 4.050 13 C -0.093 4.093 14 H 0.073 0.927 15 C -0.183 4.183 16 C -0.005 4.005 17 C -0.567 4.567 18 H 0.079 0.921 19 C -0.200 4.200 20 N -0.577 5.577 21 Si 0.786 3.214 22 H -0.191 1.191 23 H -0.211 1.211 24 H -0.194 1.194 25 C -0.188 4.188 26 H 0.135 0.865 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.165 0.835 30 H 0.165 0.835 31 H 0.148 0.852 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.167 0.833 36 H 0.047 0.953 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.086 0.914 40 H 0.060 0.940 41 H 0.009 0.991 42 H 0.003 0.997 43 H 0.070 0.930 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -22.659 -4.468 12.624 26.321 hybrid contribution 1.113 0.515 -0.103 1.231 sum -21.546 -3.953 12.522 25.232 Atomic orbital electron populations 1.23315 0.76528 1.05417 1.02218 1.86034 1.23450 1.27083 1.88891 1.19104 0.92245 0.84877 0.97033 1.21463 1.00966 0.91964 1.09023 1.21241 0.94456 0.97879 0.96533 1.21022 0.94022 0.98301 1.03043 1.19599 0.94860 0.92482 0.96224 1.20446 0.90807 0.95668 0.92081 0.90448 1.22396 1.01230 1.03064 0.96158 1.60556 1.24285 1.05208 1.41161 1.21851 0.88116 0.98256 0.96811 1.21002 0.96760 0.94778 0.96804 0.92716 1.21645 1.00558 0.97097 0.99019 1.19002 0.92293 0.94930 0.94263 1.21618 1.03291 1.09390 1.22374 0.92074 1.25959 0.96580 0.98171 0.99331 1.70097 1.10775 1.33083 1.43737 0.85565 0.77283 0.79465 0.79136 1.19089 1.21077 1.19371 1.20354 0.92025 0.98241 1.08197 0.86537 0.91541 0.91934 0.83466 0.83464 0.85238 0.91325 0.91150 0.92463 0.83260 0.95335 0.92802 0.93669 0.91383 0.93960 0.99088 0.99712 0.92970 0.85741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.34 -7.25 10.50 -92.41 -0.97 -8.22 16 3 C 0.11 2.57 6.69 22.51 0.15 2.72 16 4 C -0.22 -4.08 9.04 22.37 0.20 -3.87 16 5 C -0.08 -1.56 10.04 22.25 0.22 -1.34 16 6 C -0.15 -3.18 9.32 22.28 0.21 -2.97 16 7 C -0.03 -0.75 4.95 -19.88 -0.10 -0.85 16 8 C 0.12 2.96 2.79 44.17 0.12 3.08 16 9 H 0.08 2.04 7.66 -2.39 -0.02 2.03 16 10 C -0.17 -3.52 9.14 71.98 0.66 -2.86 16 11 N -0.68 -19.14 5.71 -495.44 -2.83 -21.97 16 12 C 0.08 2.72 4.94 86.30 0.43 3.14 16 13 C -0.07 -3.06 2.54 -10.80 -0.03 -3.08 16 14 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 15 C -0.13 -4.51 8.77 71.98 0.63 -3.88 16 16 C 0.03 1.74 4.45 29.85 0.13 1.87 16 17 C -0.53 -30.16 8.41 25.60 0.22 -29.95 16 18 H 0.06 3.35 7.05 -2.92 -0.02 3.32 16 19 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 20 N -0.94 -57.86 13.29 21.45 0.28 -57.58 16 21 Si 0.96 44.87 29.54 68.60 2.03 46.90 16 22 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 23 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 24 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 25 C -0.17 -4.19 9.61 22.36 0.21 -3.97 16 26 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.07 0.60 7.66 -2.39 -0.02 0.58 16 28 H 0.06 0.63 7.66 -2.39 -0.02 0.61 16 29 H 0.15 1.95 6.30 -2.91 -0.02 1.93 16 30 H 0.15 1.95 8.06 -2.92 -0.02 1.92 16 31 H 0.13 2.59 7.25 -2.91 -0.02 2.57 16 32 H 0.07 1.29 8.13 -2.39 -0.02 1.27 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.06 1.25 7.45 -2.39 -0.02 1.23 16 35 H 0.35 8.73 6.07 -89.69 -0.54 8.18 16 36 H 0.03 0.97 7.44 -2.38 -0.02 0.95 16 37 H 0.05 2.00 8.06 -2.38 -0.02 1.98 16 38 H 0.04 1.77 6.95 -2.39 -0.02 1.75 16 39 H 0.07 1.93 6.68 -2.39 -0.02 1.92 16 40 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 41 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 42 H -0.02 -0.91 8.14 -2.39 -0.02 -0.92 16 43 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 44 H 0.12 2.99 8.04 -2.91 -0.02 2.97 16 Total: -1.00 -67.52 353.92 3.57 -63.95 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.42 Total: 17.26 kcal Atomic # 6 Polarization: -44.98 SS G_CDS: 4.63 Total: -40.34 kcal Atomic # 7 Polarization: -77.00 SS G_CDS: -2.54 Total: -79.55 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -0.97 Total: -8.22 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -67.52 3.57 -63.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602521650.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.342 kcal (2) G-P(sol) polarization free energy of solvation -67.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds