Wall clock time and date at job start Mon Mar 30 2020 02:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35896 * 117.00039 * 179.97438 * 3 2 1 5 5 C 1.38738 * 120.05353 * 359.72616 * 4 3 2 6 6 C 1.38148 * 119.94048 * 179.74738 * 5 4 3 7 7 C 1.38261 * 120.05800 * 0.50500 * 6 5 4 8 8 C 1.50703 * 119.94589 * 179.75166 * 7 6 5 9 9 N 1.46903 * 109.46784 * 270.01765 * 8 7 6 10 10 C 1.46893 * 110.99971 * 180.02562 * 9 8 7 11 11 C 1.53002 * 109.47114 * 180.02562 * 10 9 8 12 12 H 1.09003 * 109.47542 * 54.99403 * 11 10 9 13 13 C 1.53005 * 109.47061 * 294.99637 * 11 10 9 14 14 C 1.53000 * 109.47416 * 175.00111 * 11 10 9 15 15 C 1.50693 * 109.47627 * 184.99758 * 14 11 10 16 16 H 1.08004 * 119.99871 * 0.02562 * 15 14 11 17 17 C 1.37877 * 120.00536 * 179.97438 * 15 14 11 18 18 N 1.31514 * 119.99706 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00093 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47076 * 60.00695 * 19 17 15 21 21 H 1.48506 * 109.47016 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47516 * 300.00432 * 19 17 15 23 23 C 1.38262 * 120.11048 * 359.76434 * 7 6 5 24 24 C 1.38145 * 120.05942 * 359.97438 * 23 7 6 25 25 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 26 26 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 28 28 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 29 29 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 30 30 H 1.07995 * 120.02746 * 359.97438 * 5 4 3 31 31 H 1.08004 * 119.97067 * 180.22662 * 6 5 4 32 32 H 1.08992 * 109.47037 * 30.01395 * 8 7 6 33 33 H 1.08998 * 109.46989 * 150.02347 * 8 7 6 34 34 H 1.00902 * 110.99798 * 56.04251 * 9 8 7 35 35 H 1.08997 * 109.47276 * 299.99607 * 10 9 8 36 36 H 1.08991 * 109.47289 * 60.00186 * 10 9 8 37 37 H 1.08997 * 109.47284 * 179.97438 * 13 11 10 38 38 H 1.09003 * 109.47107 * 300.00660 * 13 11 10 39 39 H 1.09005 * 109.46941 * 59.99874 * 13 11 10 40 40 H 1.09002 * 109.46492 * 304.99682 * 14 11 10 41 41 H 1.08994 * 109.47396 * 64.99327 * 14 11 10 42 42 H 0.97001 * 119.99836 * 179.97438 * 18 17 15 43 43 H 1.08009 * 119.97583 * 179.97438 * 23 7 6 44 44 H 1.08000 * 120.03441 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3535 1.5255 0.0005 5 6 4.1997 0.4261 0.0068 6 6 5.5689 0.6099 0.0021 7 6 6.0961 1.8881 0.0016 8 6 7.5901 2.0856 0.0021 9 7 8.0750 2.1501 1.3873 10 6 9.5306 2.3432 1.4271 11 6 9.9974 2.4046 2.8828 12 1 9.6629 1.5109 3.4097 13 6 9.4061 3.6448 3.5561 14 6 11.5249 2.4804 2.9260 15 6 11.9909 2.4172 4.3576 16 1 11.2697 2.3310 5.1569 17 6 13.3380 2.4682 4.6472 18 7 14.2162 2.5726 3.6739 19 14 13.9154 2.3905 6.4220 20 1 13.4652 1.1144 7.0336 21 1 15.3981 2.4640 6.4638 22 1 13.3421 3.5319 7.1795 23 6 5.2549 2.9853 0.0010 24 6 3.8850 2.8070 0.0003 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.7884 -0.5724 0.0117 31 1 6.2281 -0.2456 0.0032 32 1 8.0671 1.2509 -0.5113 33 1 7.8338 3.0155 -0.5117 34 1 7.8049 1.3263 1.9036 35 1 10.0215 1.5105 0.9234 36 1 9.7874 3.2749 0.9232 37 1 9.7382 3.6883 4.5934 38 1 9.7405 4.5385 3.0293 39 1 8.3178 3.5908 3.5254 40 1 11.9460 1.6431 2.3695 41 1 11.8550 3.4174 2.4775 42 1 15.1639 2.6089 3.8776 43 1 5.6690 3.9828 0.0011 44 1 3.2282 3.6644 0.0003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602521833.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:24 Heat of formation + Delta-G solvation = -56.307391 kcal Electronic energy + Delta-G solvation = -20411.922620 eV Core-core repulsion = 17327.695701 eV Total energy + Delta-G solvation = -3084.226919 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.10858 -39.07916 -37.96266 -35.62235 -34.02612 -32.76492 -31.85060 -30.88777 -28.79508 -27.13497 -25.61097 -24.87876 -23.88010 -22.86663 -21.93664 -20.73479 -19.21548 -18.47820 -17.17309 -17.02637 -16.65063 -16.55339 -16.17403 -15.61353 -15.45995 -15.22614 -14.53117 -14.41868 -14.36320 -14.18554 -14.05727 -13.55869 -13.32644 -13.13534 -13.02328 -12.81434 -12.71737 -12.60193 -12.50331 -12.24181 -12.19532 -11.93527 -11.65475 -11.60725 -11.46662 -11.07784 -10.90300 -10.51799 -9.92753 -9.35391 -9.01947 -8.16315 -6.25296 0.42260 0.43458 1.40678 1.43516 1.51139 2.28157 2.42862 2.74788 3.16792 3.47545 3.83679 3.92046 3.99487 4.05994 4.14196 4.19717 4.29795 4.36914 4.41169 4.45955 4.54826 4.58146 4.72461 4.78094 4.91994 4.93102 4.94464 4.96336 5.04401 5.12386 5.20695 5.30359 5.33217 5.40632 5.47877 5.52369 5.57453 5.72394 5.82729 5.84680 5.90404 6.08598 6.32917 6.48232 6.50293 6.90465 7.42622 8.95388 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.036787 B = 0.002416 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.963446 B =11587.194833 C =11831.093193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 O -0.334 6.334 4 C 0.115 3.885 5 C -0.211 4.211 6 C -0.079 4.079 7 C -0.124 4.124 8 C 0.104 3.896 9 N -0.681 5.681 10 C 0.077 3.923 11 C -0.074 4.074 12 H 0.053 0.947 13 C -0.113 4.113 14 C 0.032 3.968 15 C -0.529 4.529 16 H 0.060 0.940 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.961 3.039 20 H -0.267 1.267 21 H -0.285 1.285 22 H -0.268 1.268 23 C -0.064 4.064 24 C -0.165 4.165 25 H 0.063 0.937 26 H 0.099 0.901 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.145 0.855 31 H 0.135 0.865 32 H 0.040 0.960 33 H 0.079 0.921 34 H 0.341 0.659 35 H 0.020 0.980 36 H 0.064 0.936 37 H 0.036 0.964 38 H 0.035 0.965 39 H 0.065 0.935 40 H -0.013 1.013 41 H -0.010 1.010 42 H 0.262 0.738 43 H 0.137 0.863 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.879 -5.275 -9.727 28.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.030 4.030 3 O -0.249 6.249 4 C 0.070 3.930 5 C -0.230 4.230 6 C -0.097 4.097 7 C -0.124 4.124 8 C -0.025 4.025 9 N -0.312 5.312 10 C -0.052 4.052 11 C -0.093 4.093 12 H 0.071 0.929 13 C -0.170 4.170 14 C -0.005 4.005 15 C -0.567 4.567 16 H 0.078 0.922 17 C -0.201 4.201 18 N -0.576 5.576 19 Si 0.786 3.214 20 H -0.192 1.192 21 H -0.210 1.210 22 H -0.193 1.193 23 C -0.082 4.082 24 C -0.184 4.184 25 H 0.082 0.918 26 H 0.118 0.882 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.162 0.838 31 H 0.153 0.847 32 H 0.058 0.942 33 H 0.098 0.902 34 H 0.159 0.841 35 H 0.038 0.962 36 H 0.082 0.918 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.084 0.916 40 H 0.005 0.995 41 H 0.009 0.991 42 H 0.070 0.930 43 H 0.155 0.845 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -25.997 -4.454 -9.702 28.104 hybrid contribution 1.279 -1.036 0.470 1.712 sum -24.718 -5.489 -9.233 26.951 Atomic orbital electron populations 1.21806 0.91518 1.04147 1.03172 1.23047 0.96887 0.80865 1.02169 1.86049 1.18903 1.31213 1.88687 1.19185 0.82620 0.94557 0.96644 1.21389 0.94048 0.98680 1.08835 1.21059 0.94749 0.96985 0.96934 1.19755 0.95118 0.93478 1.04085 1.20810 0.90495 1.01451 0.89726 1.60516 1.11907 1.45577 1.13176 1.21866 0.87047 0.99775 0.96518 1.21014 0.95353 0.98408 0.94521 0.92902 1.21483 0.99884 0.96420 0.99244 1.19013 0.91575 0.94490 0.95459 1.21613 0.92028 1.49258 0.93829 0.92167 1.25965 0.97306 0.95165 1.01679 1.70095 1.01821 1.51883 1.33751 0.85558 0.76906 0.79111 0.79817 1.19245 1.21032 1.19304 1.21006 0.91887 0.99398 0.95955 1.20615 0.95446 0.95297 1.07019 0.91772 0.88242 0.91960 0.91124 0.91391 0.83771 0.84727 0.94168 0.90214 0.84062 0.96160 0.91776 0.94472 0.94553 0.91632 0.99491 0.99119 0.92967 0.84478 0.84549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.28 71.98 0.74 -0.61 16 2 C 0.04 0.57 5.46 71.98 0.39 0.96 16 3 O -0.33 -6.66 10.14 -92.39 -0.94 -7.59 16 4 C 0.12 2.45 6.69 22.51 0.15 2.60 16 5 C -0.21 -4.01 9.04 22.37 0.20 -3.81 16 6 C -0.08 -1.58 9.69 22.25 0.22 -1.36 16 7 C -0.12 -2.73 5.39 -19.85 -0.11 -2.84 16 8 C 0.10 2.43 5.81 85.56 0.50 2.93 16 9 N -0.68 -19.03 5.94 -517.96 -3.08 -22.11 16 10 C 0.08 2.63 5.08 86.31 0.44 3.06 16 11 C -0.07 -3.05 2.48 -10.79 -0.03 -3.07 16 12 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 13 C -0.11 -4.39 8.89 71.98 0.64 -3.75 16 14 C 0.03 1.71 4.45 29.85 0.13 1.84 16 15 C -0.53 -30.19 8.41 25.60 0.22 -29.97 16 16 H 0.06 3.31 7.06 -2.91 -0.02 3.28 16 17 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 18 N -0.93 -57.51 13.29 21.45 0.28 -57.22 16 19 Si 0.96 44.83 29.54 68.60 2.03 46.86 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 21 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 23 C -0.06 -1.38 9.69 22.25 0.22 -1.17 16 24 C -0.17 -3.53 9.99 22.37 0.22 -3.31 16 25 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.07 0.75 7.68 -2.39 -0.02 0.73 16 29 H 0.07 0.77 7.65 -2.39 -0.02 0.75 16 30 H 0.14 2.05 6.30 -2.91 -0.02 2.03 16 31 H 0.13 2.28 8.06 -2.91 -0.02 2.25 16 32 H 0.04 0.90 8.08 -2.39 -0.02 0.88 16 33 H 0.08 1.84 8.08 -2.39 -0.02 1.82 16 34 H 0.34 9.20 8.72 -89.69 -0.78 8.42 16 35 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.04 1.54 6.95 -2.39 -0.02 1.52 16 38 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.06 2.24 7.75 -2.38 -0.02 2.22 16 40 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 41 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 42 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 43 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 44 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -65.86 361.06 2.86 -62.99 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.17 Total: 15.34 kcal Atomic # 6 Polarization: -42.66 SS G_CDS: 4.39 Total: -38.26 kcal Atomic # 7 Polarization: -76.54 SS G_CDS: -2.79 Total: -79.34 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: -0.94 Total: -7.59 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -65.86 2.86 -62.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602521833.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.686 kcal (2) G-P(sol) polarization free energy of solvation -65.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds