Wall clock time and date at job start Mon Mar 30 2020 01:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35904 * 117.00122 * 2 1 4 4 C 1.38727 * 120.05519 * 180.02562 * 3 2 1 5 5 C 1.38149 * 119.94355 * 179.97438 * 4 3 2 6 6 C 1.38269 * 120.05511 * 359.97438 * 5 4 3 7 7 C 1.50695 * 119.94257 * 180.02562 * 6 5 4 8 8 H 1.08994 * 109.47229 * 339.99469 * 7 6 5 9 9 C 1.52993 * 109.47261 * 99.99906 * 7 6 5 10 10 N 1.46904 * 109.46760 * 219.99997 * 7 6 5 11 11 C 1.46899 * 111.00029 * 155.00092 * 10 7 6 12 12 C 1.52997 * 109.47254 * 179.97438 * 11 10 7 13 13 H 1.09008 * 109.47017 * 54.99767 * 12 11 10 14 14 C 1.53001 * 109.47242 * 295.00236 * 12 11 10 15 15 C 1.52994 * 109.47404 * 174.99689 * 12 11 10 16 16 C 1.50701 * 109.47248 * 184.99754 * 15 12 11 17 17 H 1.07997 * 120.00120 * 0.02562 * 16 15 12 18 18 C 1.37881 * 119.99825 * 179.97438 * 16 15 12 19 19 N 1.31509 * 120.00260 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99910 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47012 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47039 * 120.00256 * 20 18 16 23 23 H 1.48497 * 109.47404 * 240.00231 * 20 18 16 24 24 C 1.38267 * 120.10991 * 0.27339 * 6 5 4 25 25 C 1.38148 * 120.05456 * 359.45525 * 24 6 5 26 26 H 1.08989 * 109.47468 * 300.00295 * 1 2 3 27 27 H 1.09004 * 109.46781 * 60.00171 * 1 2 3 28 28 H 1.08997 * 109.47130 * 179.97438 * 1 2 3 29 29 H 1.08000 * 120.02864 * 359.95386 * 4 3 2 30 30 H 1.07998 * 119.97330 * 180.02562 * 5 4 3 31 31 H 1.09001 * 109.46997 * 179.97438 * 9 7 6 32 32 H 1.08999 * 109.47404 * 299.99809 * 9 7 6 33 33 H 1.09004 * 109.47538 * 59.99756 * 9 7 6 34 34 H 1.00908 * 110.99583 * 278.95004 * 10 7 6 35 35 H 1.09002 * 109.47043 * 299.99792 * 11 10 7 36 36 H 1.09001 * 109.47354 * 59.99854 * 11 10 7 37 37 H 1.08998 * 109.47430 * 59.99652 * 14 12 11 38 38 H 1.08996 * 109.47271 * 180.02562 * 14 12 11 39 39 H 1.09008 * 109.46731 * 299.99706 * 14 12 11 40 40 H 1.09001 * 109.47698 * 305.00111 * 15 12 11 41 41 H 1.09009 * 109.47010 * 65.00116 * 15 12 11 42 42 H 0.97000 * 120.00592 * 179.97438 * 19 18 16 43 43 H 1.07998 * 119.97072 * 179.70546 * 24 6 5 44 44 H 1.07999 * 120.02525 * 180.27828 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0561 2.5169 -0.0011 6 6 3.3019 3.6758 -0.0016 7 6 3.9861 5.0185 -0.0028 8 1 5.0115 4.9041 0.3485 9 6 3.9940 5.5856 -1.4237 10 7 3.2634 5.9371 0.8871 11 6 4.1511 6.9973 1.3829 12 6 3.3644 7.9322 2.3036 13 1 2.8962 7.3506 3.0978 14 6 2.2842 8.6538 1.4953 15 6 4.3149 8.9617 2.9179 16 6 3.5650 9.8042 3.9174 17 1 2.5156 9.6232 4.0968 18 6 4.2191 10.8055 4.6035 19 7 5.4971 11.0257 4.3853 20 14 3.2898 11.8494 5.8429 21 1 1.8747 11.4032 5.9036 22 1 3.9134 11.6999 7.1823 23 1 3.3426 13.2744 5.4285 24 6 1.9211 3.6048 0.0041 25 6 1.2915 2.3751 -0.0010 26 1 -0.3634 0.5138 0.8898 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 4.0208 0.3799 -0.0002 30 1 5.1345 2.5750 -0.0019 31 1 4.4885 6.5570 -1.4244 32 1 4.5303 4.9041 -2.0840 33 1 2.9685 5.7001 -1.7750 34 1 2.4562 6.3281 0.4248 35 1 4.9763 6.5504 1.9374 36 1 4.5451 7.5650 0.5399 37 1 1.6070 7.9204 1.0577 38 1 1.7240 9.3202 2.1512 39 1 2.7524 9.2354 0.7011 40 1 5.1342 8.4463 3.4192 41 1 4.7152 9.6014 2.1312 42 1 5.9572 11.7303 4.8677 43 1 1.3342 4.5114 0.0085 44 1 0.2129 2.3202 -0.0011 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602523890.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:53 Heat of formation + Delta-G solvation = -34.084229 kcal Electronic energy + Delta-G solvation = -20967.801137 eV Core-core repulsion = 17884.537887 eV Total energy + Delta-G solvation = -3083.263250 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.27865 -38.40107 -36.72864 -34.52861 -32.31093 -31.13905 -30.30487 -28.70869 -27.33589 -26.79043 -25.26966 -23.50454 -22.78409 -21.90313 -20.45185 -18.99949 -18.28059 -16.62499 -16.22378 -15.91838 -15.77095 -15.01393 -14.78517 -14.43856 -14.33436 -13.78215 -13.68518 -13.24960 -13.15868 -12.94537 -12.63412 -12.48136 -12.19867 -12.07897 -11.75179 -11.60401 -11.36029 -11.07332 -11.01828 -10.87250 -10.78608 -10.73553 -10.31181 -10.16276 -9.71045 -9.14462 -9.03983 -8.94072 -8.32005 -8.20326 -8.04304 -5.96501 -3.97425 1.29992 1.39238 3.11118 3.32857 3.40491 3.44531 3.69673 4.40390 4.51554 4.68199 4.80033 4.85279 4.89598 4.91504 5.16683 5.19826 5.26296 5.34826 5.39434 5.42172 5.55077 5.66850 5.74287 5.82324 5.87925 5.98402 6.03151 6.09953 6.20269 6.27806 6.36138 6.47482 6.57441 6.61614 6.69664 6.98045 7.12007 7.19183 7.26256 7.40913 7.66372 7.72061 7.87899 8.04052 8.48036 9.09226 9.65961 11.15080 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.028005 B = 0.002898 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.596225 B = 9658.873246 C =10077.560888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.322 6.322 3 C 0.116 3.884 4 C -0.152 4.152 5 C -0.078 4.078 6 C -0.095 4.095 7 C 0.122 3.878 8 H 0.084 0.916 9 C -0.177 4.177 10 N -0.682 5.682 11 C 0.065 3.935 12 C -0.084 4.084 13 H 0.065 0.935 14 C -0.133 4.133 15 C 0.028 3.972 16 C -0.511 4.511 17 H 0.056 0.944 18 C 0.054 3.946 19 N -0.897 5.897 20 Si 0.889 3.111 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 C -0.058 4.058 25 C -0.208 4.208 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.097 0.903 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.337 0.663 35 H 0.067 0.933 36 H 0.025 0.975 37 H 0.030 0.970 38 H 0.062 0.938 39 H 0.040 0.960 40 H 0.015 0.985 41 H 0.014 0.986 42 H 0.259 0.741 43 H 0.124 0.876 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.205 -19.006 -12.695 23.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.236 6.236 3 C 0.071 3.929 4 C -0.171 4.171 5 C -0.097 4.097 6 C -0.096 4.096 7 C 0.012 3.988 8 H 0.103 0.897 9 C -0.236 4.236 10 N -0.313 5.313 11 C -0.064 4.064 12 C -0.103 4.103 13 H 0.083 0.917 14 C -0.191 4.191 15 C -0.010 4.010 16 C -0.550 4.550 17 H 0.075 0.925 18 C -0.146 4.146 19 N -0.537 5.537 20 Si 0.717 3.283 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.076 4.076 25 C -0.227 4.227 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.115 0.885 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.157 0.843 35 H 0.085 0.915 36 H 0.043 0.957 37 H 0.049 0.951 38 H 0.081 0.919 39 H 0.060 0.940 40 H 0.033 0.967 41 H 0.032 0.968 42 H 0.068 0.932 43 H 0.142 0.858 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.903 -19.469 -12.077 23.928 hybrid contribution -0.580 1.364 -0.039 1.483 sum -7.483 -18.105 -12.116 23.035 Atomic orbital electron populations 1.23019 0.78600 1.03676 1.01392 1.86041 1.21234 1.27246 1.89034 1.19010 0.92380 0.84003 0.97501 1.20335 0.91299 0.98454 1.06996 1.20820 0.99741 0.90979 0.98129 1.19766 0.93650 0.94522 1.01692 1.20399 0.97409 0.89803 0.91188 0.89738 1.22484 1.02176 1.01403 0.97495 1.60701 1.09992 1.20528 1.40103 1.22170 0.95456 0.91323 0.97414 1.21217 0.96753 0.95997 0.96322 0.91667 1.21739 0.98414 0.99253 0.99673 1.19114 0.93969 0.92627 0.95289 1.21278 0.96189 1.15682 1.21819 0.92533 1.25023 0.94857 0.97537 0.97184 1.69972 1.08957 1.32308 1.42453 0.86580 0.80118 0.80225 0.81349 1.19756 1.21091 1.21141 1.20716 0.94144 0.96751 0.96002 1.21210 0.99830 0.92416 1.09212 0.92613 0.92784 0.88463 0.85504 0.85513 0.92105 0.92178 0.92508 0.84330 0.91454 0.95701 0.95063 0.91894 0.94043 0.96658 0.96770 0.93169 0.85814 0.85767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.49 10.50 -19.44 -0.20 -3.69 16 3 C 0.12 1.35 6.69 -39.22 -0.26 1.09 16 4 C -0.15 -1.72 9.99 -39.43 -0.39 -2.11 16 5 C -0.08 -0.88 9.66 -39.60 -0.38 -1.26 16 6 C -0.10 -1.15 4.96 -104.60 -0.52 -1.67 16 7 C 0.12 1.51 2.79 -68.87 -0.19 1.32 16 8 H 0.08 1.06 7.66 -51.93 -0.40 0.66 16 9 C -0.18 -1.91 9.14 37.15 0.34 -1.57 16 10 N -0.68 -9.83 5.69 -107.96 -0.61 -10.44 16 11 C 0.06 1.11 4.94 -3.83 -0.02 1.09 16 12 C -0.08 -1.71 2.54 -90.62 -0.23 -1.94 16 13 H 0.06 1.40 8.14 -51.92 -0.42 0.98 16 14 C -0.13 -2.46 8.77 37.16 0.33 -2.13 16 15 C 0.03 0.70 4.45 -27.89 -0.12 0.58 16 16 C -0.51 -14.34 8.41 -34.44 -0.29 -14.63 16 17 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 18 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 19 N -0.90 -27.06 13.29 55.43 0.74 -26.33 16 20 Si 0.89 21.78 29.54 -169.99 -5.02 16.75 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 24 C -0.06 -0.68 9.32 -39.60 -0.37 -1.05 16 25 C -0.21 -2.30 9.04 -39.43 -0.36 -2.66 16 26 H 0.06 0.36 7.66 -51.94 -0.40 -0.03 16 27 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 28 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 30 H 0.13 1.18 8.03 -52.49 -0.42 0.76 16 31 H 0.06 0.69 7.45 -51.93 -0.39 0.31 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 34 H 0.34 4.57 6.06 -39.29 -0.24 4.33 16 35 H 0.07 1.20 8.06 -51.93 -0.42 0.78 16 36 H 0.02 0.42 7.44 -51.93 -0.39 0.03 16 37 H 0.03 0.48 6.68 -51.93 -0.35 0.13 16 38 H 0.06 1.26 6.95 -51.93 -0.36 0.90 16 39 H 0.04 0.75 8.14 -51.92 -0.42 0.33 16 40 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.01 0.38 8.14 -51.92 -0.42 -0.04 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.12 1.37 7.23 -52.49 -0.38 0.99 16 44 H 0.12 1.12 6.30 -52.49 -0.33 0.79 16 LS Contribution 353.88 15.07 5.33 5.33 Total: -1.00 -30.93 353.88 -8.70 -39.63 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -7.35 Total: 1.04 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: -1.58 Total: -22.29 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: 0.12 Total: -36.77 kcal Atomic # 8 Polarization: -3.49 SS G_CDS: -0.20 Total: -3.69 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.93 -8.70 -39.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602523890.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.546 kcal (2) G-P(sol) polarization free energy of solvation -30.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds