Wall clock time and date at job start Mon Mar 30 2020 01:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35894 * 117.00073 * 2 1 4 4 C 1.38735 * 120.05440 * 180.02562 * 3 2 1 5 5 C 1.38142 * 119.94437 * 179.97438 * 4 3 2 6 6 C 1.38260 * 120.05818 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.94845 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.46361 * 339.99499 * 7 6 5 9 9 C 1.52998 * 109.47463 * 99.99784 * 7 6 5 10 10 N 1.46897 * 109.46934 * 220.00104 * 7 6 5 11 11 C 1.46905 * 111.00138 * 155.00008 * 10 7 6 12 12 C 1.52999 * 109.47028 * 179.97438 * 11 10 7 13 13 H 1.08996 * 109.46929 * 304.98924 * 12 11 10 14 14 C 1.52997 * 109.47317 * 64.99820 * 12 11 10 15 15 C 1.53006 * 109.46623 * 184.99640 * 12 11 10 16 16 C 1.50703 * 109.46967 * 174.99771 * 15 12 11 17 17 H 1.07996 * 119.99755 * 0.02562 * 16 15 12 18 18 C 1.37876 * 120.00135 * 179.97438 * 16 15 12 19 19 N 1.31512 * 119.99773 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99975 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47237 * 90.00441 * 20 18 16 22 22 H 1.48506 * 109.47247 * 210.00240 * 20 18 16 23 23 H 1.48500 * 109.47404 * 330.00197 * 20 18 16 24 24 C 1.38272 * 120.11203 * 0.27057 * 6 5 4 25 25 C 1.38146 * 120.04841 * 359.45756 * 24 6 5 26 26 H 1.09002 * 109.46574 * 59.99601 * 1 2 3 27 27 H 1.08997 * 109.47259 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46674 * 300.00080 * 1 2 3 29 29 H 1.08006 * 120.02589 * 359.95458 * 4 3 2 30 30 H 1.08007 * 119.96940 * 180.02562 * 5 4 3 31 31 H 1.08992 * 109.47065 * 180.02562 * 9 7 6 32 32 H 1.09004 * 109.46776 * 300.00361 * 9 7 6 33 33 H 1.08999 * 109.47040 * 59.99894 * 9 7 6 34 34 H 1.00906 * 110.99758 * 278.94882 * 10 7 6 35 35 H 1.08994 * 109.47305 * 59.99331 * 11 10 7 36 36 H 1.08998 * 109.46287 * 299.99779 * 11 10 7 37 37 H 1.09002 * 109.47153 * 299.99641 * 14 12 11 38 38 H 1.09001 * 109.46832 * 179.97438 * 14 12 11 39 39 H 1.09004 * 109.47261 * 59.99813 * 14 12 11 40 40 H 1.09001 * 109.47326 * 294.99995 * 15 12 11 41 41 H 1.09000 * 109.46904 * 55.00348 * 15 12 11 42 42 H 0.97000 * 120.00259 * 179.97438 * 19 18 16 43 43 H 1.07992 * 119.97310 * 179.70352 * 24 6 5 44 44 H 1.08002 * 120.02497 * 180.27685 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0562 2.5168 -0.0011 6 6 3.3021 3.6756 -0.0005 7 6 3.9863 5.0184 -0.0017 8 1 5.0121 4.9037 0.3487 9 6 3.9931 5.5862 -1.4224 10 7 3.2643 5.9366 0.8891 11 6 4.1525 6.9966 1.3846 12 6 3.3665 7.9312 2.3063 13 1 2.4907 8.3093 1.7791 14 6 2.9199 7.1624 3.5515 15 6 4.2567 9.1039 2.7229 16 6 3.4477 10.0868 3.5294 17 1 2.4033 9.8942 3.7256 18 6 4.0412 11.2315 4.0177 19 7 5.3131 11.4658 3.7792 20 14 3.0386 12.4495 5.0180 21 1 3.1185 12.0924 6.4572 22 1 3.5785 13.8183 4.8170 23 1 1.6219 12.4063 4.5752 24 6 1.9213 3.6048 0.0062 25 6 1.2917 2.3751 0.0011 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 4.0209 0.3797 -0.0002 30 1 5.1347 2.5748 -0.0019 31 1 4.4884 6.5571 -1.4233 32 1 4.5289 4.9048 -2.0834 33 1 2.9674 5.7008 -1.7728 34 1 2.4568 6.3278 0.4276 35 1 4.5459 7.5646 0.5416 36 1 4.9781 6.5495 1.9382 37 1 2.2858 6.3270 3.2547 38 1 2.3603 7.8284 4.2083 39 1 3.7958 6.7844 4.0787 40 1 5.0859 8.7342 3.3261 41 1 4.6466 9.5980 1.8330 42 1 5.7306 12.2713 4.1224 43 1 1.3345 4.5114 0.0114 44 1 0.2131 2.3202 0.0018 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602523892.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:58 Heat of formation + Delta-G solvation = -34.385407 kcal Electronic energy + Delta-G solvation = -20974.505719 eV Core-core repulsion = 17891.229409 eV Total energy + Delta-G solvation = -3083.276310 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.28145 -38.38441 -36.66806 -34.54178 -32.29583 -31.14198 -30.33598 -28.70647 -27.33972 -26.71103 -25.12573 -23.46789 -22.79551 -21.92511 -20.51621 -19.06441 -18.27686 -16.54518 -16.19139 -15.92048 -15.72347 -14.87968 -14.76937 -14.53277 -14.34334 -13.78050 -13.74770 -13.36346 -13.12984 -12.79597 -12.60914 -12.48517 -12.15314 -12.08841 -11.66201 -11.48451 -11.33643 -11.07609 -10.98331 -10.82855 -10.79036 -10.74296 -10.27092 -10.21866 -9.68017 -9.13044 -9.04344 -8.94126 -8.31552 -8.19063 -8.03470 -5.96346 -3.97294 1.29643 1.38935 3.10679 3.33850 3.40073 3.43246 3.69370 4.40014 4.51454 4.67893 4.79625 4.85408 4.89285 4.91049 5.16729 5.19427 5.26513 5.34551 5.39505 5.42053 5.55042 5.65985 5.73590 5.83122 5.91118 6.00071 6.07247 6.19202 6.21552 6.33443 6.44366 6.56835 6.64060 6.69348 6.71775 7.04867 7.21177 7.22461 7.26131 7.40493 7.65768 7.71791 7.87529 8.04142 8.48281 9.09152 9.65985 11.15229 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.031364 B = 0.002883 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.526992 B = 9709.845974 C =10209.701750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.322 6.322 3 C 0.116 3.884 4 C -0.152 4.152 5 C -0.079 4.079 6 C -0.095 4.095 7 C 0.123 3.877 8 H 0.084 0.916 9 C -0.177 4.177 10 N -0.679 5.679 11 C 0.064 3.936 12 C -0.082 4.082 13 H 0.052 0.948 14 C -0.122 4.122 15 C 0.027 3.973 16 C -0.512 4.512 17 H 0.056 0.944 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.890 3.110 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.057 4.057 25 C -0.208 4.208 26 H 0.054 0.946 27 H 0.097 0.903 28 H 0.055 0.945 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.336 0.664 35 H 0.025 0.975 36 H 0.066 0.934 37 H 0.042 0.958 38 H 0.052 0.948 39 H 0.039 0.961 40 H 0.016 0.984 41 H 0.012 0.988 42 H 0.259 0.741 43 H 0.125 0.875 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.610 -20.548 -10.704 24.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.236 6.236 3 C 0.071 3.929 4 C -0.171 4.171 5 C -0.097 4.097 6 C -0.096 4.096 7 C 0.013 3.987 8 H 0.102 0.898 9 C -0.236 4.236 10 N -0.309 5.309 11 C -0.064 4.064 12 C -0.101 4.101 13 H 0.071 0.929 14 C -0.180 4.180 15 C -0.010 4.010 16 C -0.550 4.550 17 H 0.074 0.926 18 C -0.146 4.146 19 N -0.537 5.537 20 Si 0.718 3.282 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.076 4.076 25 C -0.227 4.227 26 H 0.072 0.928 27 H 0.115 0.885 28 H 0.074 0.926 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.154 0.846 35 H 0.044 0.956 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.034 0.966 41 H 0.031 0.969 42 H 0.069 0.931 43 H 0.142 0.858 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.306 -20.995 -10.104 24.137 hybrid contribution -0.617 1.470 -0.187 1.605 sum -6.923 -19.525 -10.291 23.131 Atomic orbital electron populations 1.23021 0.78596 1.03674 1.01392 1.86040 1.21236 1.27254 1.89033 1.19010 0.92378 0.84007 0.97511 1.20333 0.91299 0.98449 1.07024 1.20815 0.99726 0.90995 0.98167 1.19766 0.93647 0.94513 1.01667 1.20394 0.97360 0.89795 0.91184 0.89798 1.22486 1.02208 1.01420 0.97469 1.60660 1.09840 1.20578 1.39859 1.22184 0.95537 0.91340 0.97349 1.21191 0.98438 0.95469 0.94969 0.92911 1.21583 1.00190 0.98624 0.97573 1.19123 0.94541 0.91207 0.96170 1.21239 0.96512 1.04655 1.32599 0.92595 1.25021 0.94908 0.98130 0.96532 1.69964 1.10787 1.26787 1.46175 0.86633 0.80394 0.80612 0.80595 1.20722 1.21337 1.19933 1.20721 0.94139 0.96759 0.95954 1.21212 0.99828 0.92427 1.09214 0.92770 0.88464 0.92626 0.85529 0.85548 0.92071 0.92225 0.92461 0.84550 0.95637 0.91539 0.93941 0.92875 0.94198 0.96572 0.96948 0.93119 0.85754 0.85782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.46 10.50 -19.41 -0.20 -3.67 16 3 C 0.12 1.33 6.69 -39.22 -0.26 1.07 16 4 C -0.15 -1.70 9.99 -39.43 -0.39 -2.10 16 5 C -0.08 -0.87 9.66 -39.61 -0.38 -1.25 16 6 C -0.10 -1.13 4.96 -104.60 -0.52 -1.65 16 7 C 0.12 1.49 2.79 -68.87 -0.19 1.30 16 8 H 0.08 1.04 7.66 -51.93 -0.40 0.64 16 9 C -0.18 -1.91 9.14 37.16 0.34 -1.57 16 10 N -0.68 -9.57 5.15 -107.95 -0.56 -10.12 16 11 C 0.06 1.09 4.87 -3.82 -0.02 1.07 16 12 C -0.08 -1.66 2.48 -90.62 -0.22 -1.88 16 13 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 14 C -0.12 -2.40 8.89 37.16 0.33 -2.07 16 15 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 16 C -0.51 -14.37 8.41 -34.44 -0.29 -14.66 16 17 H 0.06 1.53 7.05 -52.49 -0.37 1.16 16 18 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 19 N -0.90 -27.09 13.29 55.43 0.74 -26.36 16 20 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 24 C -0.06 -0.67 9.32 -39.60 -0.37 -1.03 16 25 C -0.21 -2.28 9.04 -39.43 -0.36 -2.63 16 26 H 0.05 0.32 7.66 -51.93 -0.40 -0.07 16 27 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 29 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 30 H 0.13 1.16 8.03 -52.48 -0.42 0.74 16 31 H 0.06 0.70 7.45 -51.93 -0.39 0.31 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 34 H 0.34 4.47 7.81 -39.29 -0.31 4.16 16 35 H 0.03 0.43 7.44 -51.93 -0.39 0.05 16 36 H 0.07 1.16 8.05 -51.93 -0.42 0.75 16 37 H 0.04 0.75 7.75 -51.93 -0.40 0.35 16 38 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.12 1.35 7.23 -52.49 -0.38 0.97 16 44 H 0.12 1.10 6.30 -52.49 -0.33 0.77 16 LS Contribution 356.15 15.07 5.37 5.37 Total: -1.00 -30.92 356.15 -8.72 -39.63 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -7.47 Total: 0.55 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: -1.57 Total: -22.18 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.18 Total: -36.48 kcal Atomic # 8 Polarization: -3.46 SS G_CDS: -0.20 Total: -3.67 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.92 -8.72 -39.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602523892.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.249 kcal (2) G-P(sol) polarization free energy of solvation -30.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds