Wall clock time and date at job start Mon Mar 30 2020 01:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35894 * 117.00073 * 2 1 4 4 C 1.38735 * 120.05440 * 180.02562 * 3 2 1 5 5 C 1.38142 * 119.94437 * 179.97438 * 4 3 2 6 6 C 1.38260 * 120.05818 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.94845 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.46361 * 339.99499 * 7 6 5 9 9 C 1.52998 * 109.47463 * 99.99784 * 7 6 5 10 10 N 1.46897 * 109.46934 * 220.00104 * 7 6 5 11 11 C 1.46905 * 111.00138 * 155.00008 * 10 7 6 12 12 C 1.52999 * 109.47028 * 179.97438 * 11 10 7 13 13 H 1.08996 * 109.46929 * 304.98924 * 12 11 10 14 14 C 1.52997 * 109.47317 * 64.99820 * 12 11 10 15 15 C 1.53006 * 109.46623 * 184.99640 * 12 11 10 16 16 C 1.50703 * 109.46967 * 174.99771 * 15 12 11 17 17 H 1.07996 * 119.99755 * 0.02562 * 16 15 12 18 18 C 1.37876 * 120.00135 * 179.97438 * 16 15 12 19 19 N 1.31512 * 119.99773 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99975 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47237 * 90.00441 * 20 18 16 22 22 H 1.48506 * 109.47247 * 210.00240 * 20 18 16 23 23 H 1.48500 * 109.47404 * 330.00197 * 20 18 16 24 24 C 1.38272 * 120.11203 * 0.27057 * 6 5 4 25 25 C 1.38146 * 120.04841 * 359.45756 * 24 6 5 26 26 H 1.09002 * 109.46574 * 59.99601 * 1 2 3 27 27 H 1.08997 * 109.47259 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46674 * 300.00080 * 1 2 3 29 29 H 1.08006 * 120.02589 * 359.95458 * 4 3 2 30 30 H 1.08007 * 119.96940 * 180.02562 * 5 4 3 31 31 H 1.08992 * 109.47065 * 180.02562 * 9 7 6 32 32 H 1.09004 * 109.46776 * 300.00361 * 9 7 6 33 33 H 1.08999 * 109.47040 * 59.99894 * 9 7 6 34 34 H 1.00906 * 110.99758 * 278.94882 * 10 7 6 35 35 H 1.08994 * 109.47305 * 59.99331 * 11 10 7 36 36 H 1.08998 * 109.46287 * 299.99779 * 11 10 7 37 37 H 1.09002 * 109.47153 * 299.99641 * 14 12 11 38 38 H 1.09001 * 109.46832 * 179.97438 * 14 12 11 39 39 H 1.09004 * 109.47261 * 59.99813 * 14 12 11 40 40 H 1.09001 * 109.47326 * 294.99995 * 15 12 11 41 41 H 1.09000 * 109.46904 * 55.00348 * 15 12 11 42 42 H 0.97000 * 120.00259 * 179.97438 * 19 18 16 43 43 H 1.07992 * 119.97310 * 179.70352 * 24 6 5 44 44 H 1.08002 * 120.02497 * 180.27685 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0562 2.5168 -0.0011 6 6 3.3021 3.6756 -0.0005 7 6 3.9863 5.0184 -0.0017 8 1 5.0121 4.9037 0.3487 9 6 3.9931 5.5862 -1.4224 10 7 3.2643 5.9366 0.8891 11 6 4.1525 6.9966 1.3846 12 6 3.3665 7.9312 2.3063 13 1 2.4907 8.3093 1.7791 14 6 2.9199 7.1624 3.5515 15 6 4.2567 9.1039 2.7229 16 6 3.4477 10.0868 3.5294 17 1 2.4033 9.8942 3.7256 18 6 4.0412 11.2315 4.0177 19 7 5.3131 11.4658 3.7792 20 14 3.0386 12.4495 5.0180 21 1 3.1185 12.0924 6.4572 22 1 3.5785 13.8183 4.8170 23 1 1.6219 12.4063 4.5752 24 6 1.9213 3.6048 0.0062 25 6 1.2917 2.3751 0.0011 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 4.0209 0.3797 -0.0002 30 1 5.1347 2.5748 -0.0019 31 1 4.4884 6.5571 -1.4233 32 1 4.5289 4.9048 -2.0834 33 1 2.9674 5.7008 -1.7728 34 1 2.4568 6.3278 0.4276 35 1 4.5459 7.5646 0.5416 36 1 4.9781 6.5495 1.9382 37 1 2.2858 6.3270 3.2547 38 1 2.3603 7.8284 4.2083 39 1 3.7958 6.7844 4.0787 40 1 5.0859 8.7342 3.3261 41 1 4.6466 9.5980 1.8330 42 1 5.7306 12.2713 4.1224 43 1 1.3345 4.5114 0.0114 44 1 0.2131 2.3202 0.0018 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602523892.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:58 Heat of formation + Delta-G solvation = -51.833493 kcal Electronic energy + Delta-G solvation = -20975.262325 eV Core-core repulsion = 17891.229409 eV Total energy + Delta-G solvation = -3084.032916 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.08193 -39.33095 -37.91319 -36.01855 -34.23374 -31.95601 -31.54155 -29.66157 -28.61120 -27.99398 -26.63752 -24.67131 -24.13976 -22.99284 -21.50897 -20.65859 -19.05206 -18.48756 -17.22771 -16.79717 -16.58832 -16.49378 -16.07876 -15.68482 -15.55799 -14.92468 -14.64430 -14.47136 -14.37560 -14.05562 -13.92917 -13.64105 -13.34612 -13.16690 -13.01332 -12.75388 -12.74634 -12.60084 -12.50421 -12.19257 -12.03590 -11.84234 -11.79450 -11.59101 -11.46826 -11.06860 -10.87281 -10.52350 -9.87400 -9.28532 -8.95424 -8.16456 -6.25299 0.46794 0.53143 1.40700 1.41632 1.52448 2.42746 2.43728 2.83284 3.17030 3.31677 3.89962 3.93543 4.03527 4.15111 4.25751 4.33592 4.38507 4.41179 4.43390 4.53589 4.55916 4.62730 4.72296 4.75365 4.84465 4.87374 4.94812 5.02412 5.05868 5.16678 5.22625 5.31222 5.38253 5.47795 5.49644 5.52682 5.57338 5.74385 5.83692 5.88703 5.90951 6.16087 6.33657 6.50701 6.54450 6.90968 7.42859 8.95613 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.031364 B = 0.002883 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.526992 B = 9709.845974 C =10209.701750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.338 6.338 3 C 0.106 3.894 4 C -0.163 4.163 5 C -0.082 4.082 6 C -0.107 4.107 7 C 0.126 3.874 8 H 0.080 0.920 9 C -0.171 4.171 10 N -0.677 5.677 11 C 0.079 3.921 12 C -0.073 4.073 13 H 0.055 0.945 14 C -0.112 4.112 15 C 0.032 3.968 16 C -0.527 4.527 17 H 0.061 0.939 18 C -0.003 4.003 19 N -0.936 5.936 20 Si 0.960 3.040 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.263 1.263 24 C -0.067 4.067 25 C -0.212 4.212 26 H 0.063 0.937 27 H 0.118 0.882 28 H 0.060 0.940 29 H 0.137 0.863 30 H 0.141 0.859 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.343 0.657 35 H 0.022 0.978 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.036 0.964 39 H 0.032 0.968 40 H -0.011 1.011 41 H -0.013 1.013 42 H 0.261 0.739 43 H 0.130 0.870 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.220 -21.466 -10.927 25.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.252 6.252 3 C 0.061 3.939 4 C -0.182 4.182 5 C -0.101 4.101 6 C -0.108 4.108 7 C 0.016 3.984 8 H 0.098 0.902 9 C -0.230 4.230 10 N -0.308 5.308 11 C -0.050 4.050 12 C -0.091 4.091 13 H 0.073 0.927 14 C -0.170 4.170 15 C -0.006 4.006 16 C -0.566 4.566 17 H 0.079 0.921 18 C -0.200 4.200 19 N -0.577 5.577 20 Si 0.785 3.215 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.187 1.187 24 C -0.085 4.085 25 C -0.230 4.230 26 H 0.082 0.918 27 H 0.136 0.864 28 H 0.078 0.922 29 H 0.155 0.845 30 H 0.159 0.841 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.162 0.838 35 H 0.040 0.960 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.055 0.945 39 H 0.051 0.949 40 H 0.007 0.993 41 H 0.005 0.995 42 H 0.070 0.930 43 H 0.148 0.852 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.935 -21.933 -10.337 25.512 hybrid contribution -0.131 1.669 -0.147 1.680 sum -8.067 -20.264 -10.484 24.199 Atomic orbital electron populations 1.23296 0.76738 1.05391 1.02053 1.86023 1.23239 1.27005 1.88914 1.19222 0.92763 0.84545 0.97363 1.20567 0.91649 0.98960 1.06995 1.21009 1.00577 0.90764 0.97733 1.19769 0.93956 0.94330 1.02710 1.20376 0.96956 0.89600 0.91423 0.90170 1.22414 1.02671 1.01059 0.96827 1.60571 1.09648 1.19516 1.41033 1.21851 0.95174 0.91421 0.96533 1.20997 0.97679 0.94387 0.96085 0.92696 1.21477 0.99994 0.98797 0.96699 1.19019 0.94401 0.92762 0.94378 1.21647 0.96952 1.05285 1.32674 0.92119 1.25949 0.96016 1.00297 0.97772 1.70100 1.12578 1.27561 1.47436 0.85518 0.79140 0.77883 0.78952 1.19998 1.20950 1.18703 1.20864 0.94174 0.97310 0.96155 1.21413 1.00845 0.92015 1.08765 0.91824 0.86364 0.92177 0.84468 0.84099 0.92980 0.91047 0.91866 0.83808 0.95976 0.92225 0.91571 0.94478 0.94887 0.99309 0.99457 0.92981 0.85223 0.84007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.34 -6.75 10.50 -92.36 -0.97 -7.72 16 3 C 0.11 2.29 6.69 22.51 0.15 2.44 16 4 C -0.16 -3.43 9.99 22.37 0.22 -3.21 16 5 C -0.08 -1.71 9.66 22.25 0.21 -1.50 16 6 C -0.11 -2.38 4.96 -19.85 -0.10 -2.48 16 7 C 0.13 2.90 2.79 44.17 0.12 3.02 16 8 H 0.08 1.90 7.66 -2.39 -0.02 1.89 16 9 C -0.17 -3.45 9.14 71.98 0.66 -2.79 16 10 N -0.68 -18.18 5.15 -495.46 -2.55 -20.73 16 11 C 0.08 2.66 4.87 86.30 0.42 3.08 16 12 C -0.07 -2.94 2.48 -10.79 -0.03 -2.96 16 13 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 14 C -0.11 -4.33 8.89 71.98 0.64 -3.69 16 15 C 0.03 1.68 4.45 29.85 0.13 1.82 16 16 C -0.53 -29.91 8.41 25.60 0.22 -29.70 16 17 H 0.06 3.31 7.05 -2.91 -0.02 3.29 16 18 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 19 N -0.94 -57.50 13.29 21.45 0.28 -57.22 16 20 Si 0.96 44.67 29.54 68.60 2.03 46.70 16 21 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 22 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 23 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 24 C -0.07 -1.43 9.32 22.26 0.21 -1.23 16 25 C -0.21 -4.27 9.04 22.36 0.20 -4.06 16 26 H 0.06 0.63 7.66 -2.39 -0.02 0.61 16 27 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 0.65 7.66 -2.39 -0.02 0.63 16 29 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 30 H 0.14 2.39 8.03 -2.91 -0.02 2.37 16 31 H 0.05 1.14 7.45 -2.39 -0.02 1.13 16 32 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.06 1.20 8.13 -2.39 -0.02 1.18 16 34 H 0.34 8.53 7.81 -89.69 -0.70 7.83 16 35 H 0.02 0.75 7.44 -2.39 -0.02 0.74 16 36 H 0.06 2.09 8.05 -2.39 -0.02 2.07 16 37 H 0.07 2.22 7.75 -2.39 -0.02 2.21 16 38 H 0.04 1.52 6.95 -2.39 -0.02 1.50 16 39 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 40 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 41 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 42 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 43 H 0.13 2.57 7.23 -2.91 -0.02 2.55 16 44 H 0.14 2.22 6.30 -2.91 -0.02 2.20 16 Total: -1.00 -66.10 356.15 3.69 -62.41 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 0.26 Total: 16.20 kcal Atomic # 6 Polarization: -44.27 SS G_CDS: 4.64 Total: -39.64 kcal Atomic # 7 Polarization: -75.68 SS G_CDS: -2.27 Total: -77.95 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -0.97 Total: -7.72 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -66.10 3.69 -62.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602523892.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.574 kcal (2) G-P(sol) polarization free energy of solvation -66.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds