Wall clock time and date at job start Mon Mar 30 2020 01:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35896 * 117.00117 * 2 1 4 4 C 1.38735 * 120.05699 * 179.97438 * 3 2 1 5 5 C 1.38144 * 119.94293 * 179.97438 * 4 3 2 6 6 C 1.38259 * 120.05820 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.94448 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47152 * 19.99825 * 7 6 5 9 9 C 1.53002 * 109.46966 * 259.99965 * 7 6 5 10 10 N 1.46899 * 109.47107 * 139.99738 * 7 6 5 11 11 C 1.46897 * 111.00355 * 204.99940 * 10 7 6 12 12 C 1.52994 * 109.47637 * 180.02562 * 11 10 7 13 13 H 1.09003 * 109.46824 * 305.00320 * 12 11 10 14 14 C 1.53003 * 109.46986 * 64.99713 * 12 11 10 15 15 C 1.52995 * 109.47524 * 185.00264 * 12 11 10 16 16 C 1.50703 * 109.47292 * 175.00011 * 15 12 11 17 17 H 1.07988 * 120.00066 * 0.02562 * 16 15 12 18 18 C 1.37879 * 119.99896 * 179.97438 * 16 15 12 19 19 N 1.31517 * 119.99948 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00006 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47195 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47216 * 119.99850 * 20 18 16 23 23 H 1.48501 * 109.47068 * 240.00257 * 20 18 16 24 24 C 1.38268 * 120.11108 * 0.27026 * 6 5 4 25 25 C 1.38144 * 120.05484 * 359.45075 * 24 6 5 26 26 H 1.09003 * 109.46785 * 60.00410 * 1 2 3 27 27 H 1.09000 * 109.46866 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46927 * 300.00565 * 1 2 3 29 29 H 1.07998 * 120.02275 * 359.95344 * 4 3 2 30 30 H 1.08001 * 119.96827 * 180.02562 * 5 4 3 31 31 H 1.09002 * 109.47075 * 299.99352 * 9 7 6 32 32 H 1.08996 * 109.47407 * 60.00310 * 9 7 6 33 33 H 1.09000 * 109.46986 * 180.02562 * 9 7 6 34 34 H 1.00898 * 111.00393 * 328.95895 * 10 7 6 35 35 H 1.09006 * 109.46948 * 300.00869 * 11 10 7 36 36 H 1.09006 * 109.47033 * 59.99701 * 11 10 7 37 37 H 1.08998 * 109.47223 * 180.02562 * 14 12 11 38 38 H 1.08992 * 109.47539 * 300.00502 * 14 12 11 39 39 H 1.09003 * 109.46844 * 60.00619 * 14 12 11 40 40 H 1.09002 * 109.47029 * 294.99692 * 15 12 11 41 41 H 1.09000 * 109.46875 * 54.99770 * 15 12 11 42 42 H 0.96999 * 120.00260 * 179.97438 * 19 18 16 43 43 H 1.08005 * 119.97073 * 179.70619 * 24 6 5 44 44 H 1.08002 * 120.02545 * 180.27951 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2848 0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3020 3.6757 -0.0005 7 6 3.9862 5.0185 -0.0005 8 1 5.0118 4.9037 -0.3516 9 6 3.9940 5.5869 1.4200 10 7 3.2636 5.9362 -0.8913 11 6 4.1514 6.9960 -1.3879 12 6 3.3648 7.9302 -2.3095 13 1 2.8967 7.3479 -3.1032 14 6 2.2845 8.6525 -1.5020 15 6 4.3154 8.9591 -2.9246 16 6 3.5656 9.8007 -3.9250 17 1 2.5161 9.6201 -4.1038 18 6 4.2195 10.8021 -4.6111 19 7 5.4974 11.0231 -4.3922 20 14 3.2904 11.8448 -5.8516 21 1 1.8756 11.3978 -5.9131 22 1 3.3422 13.2700 -5.4378 23 1 3.9148 11.6950 -7.1906 24 6 1.9212 3.6047 0.0051 25 6 1.2916 2.3751 -0.0002 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 4.0208 0.3798 0.0017 30 1 5.1346 2.5749 0.0000 31 1 2.9684 5.7017 1.7710 32 1 4.5302 4.9059 2.0809 33 1 4.4884 6.5583 1.4199 34 1 2.8351 5.4359 -1.6556 35 1 4.5454 7.5644 -0.5453 36 1 4.9767 6.5487 -1.9419 37 1 1.7238 9.3177 -2.1586 38 1 1.6073 7.9195 -1.0638 39 1 2.7526 9.2347 -0.7082 40 1 4.7156 9.5995 -2.1386 41 1 5.1346 8.4432 -3.4253 42 1 5.9575 11.7273 -4.8752 43 1 1.3343 4.5114 0.0095 44 1 0.2130 2.3202 -0.0003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602523893.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:01 Heat of formation + Delta-G solvation = -34.613836 kcal Electronic energy + Delta-G solvation = -20966.612658 eV Core-core repulsion = 17883.326443 eV Total energy + Delta-G solvation = -3083.286216 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.35994 -38.41261 -36.61998 -34.47351 -32.29312 -31.21063 -30.34271 -28.82181 -27.39929 -26.74780 -25.17004 -23.38619 -22.82908 -21.87008 -20.29533 -19.09821 -18.32438 -16.56212 -16.25015 -15.97698 -15.96596 -15.02655 -14.63909 -14.53414 -14.20340 -13.81673 -13.66260 -13.58302 -13.09200 -12.83161 -12.54466 -12.23377 -12.14206 -12.02966 -11.79912 -11.48671 -11.31858 -11.13898 -10.93092 -10.86467 -10.79991 -10.65760 -10.26430 -10.18037 -9.67145 -9.12961 -9.12003 -8.92529 -8.31509 -8.23181 -8.10847 -5.96103 -3.96978 1.21167 1.28933 3.04573 3.33008 3.40560 3.44676 3.62018 4.38189 4.51208 4.64519 4.71485 4.73935 4.85834 4.88703 5.15871 5.27347 5.30812 5.34056 5.39832 5.48435 5.57328 5.73407 5.82875 5.90533 5.91974 5.99786 6.15066 6.18901 6.24668 6.32747 6.44053 6.52942 6.60504 6.61614 6.72116 7.05133 7.18933 7.20782 7.23291 7.41779 7.68320 7.72940 7.88085 8.04541 8.48697 9.09753 9.66349 11.15511 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.028084 B = 0.002899 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.786171 B = 9657.211183 C =10078.627972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.120 3.880 4 C -0.154 4.154 5 C -0.076 4.076 6 C -0.120 4.120 7 C 0.125 3.875 8 H 0.048 0.952 9 C -0.133 4.133 10 N -0.681 5.681 11 C 0.064 3.936 12 C -0.082 4.082 13 H 0.052 0.948 14 C -0.122 4.122 15 C 0.027 3.973 16 C -0.511 4.511 17 H 0.056 0.944 18 C 0.054 3.946 19 N -0.897 5.897 20 Si 0.889 3.111 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 C -0.059 4.059 25 C -0.209 4.209 26 H 0.056 0.944 27 H 0.098 0.902 28 H 0.055 0.945 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.339 0.661 35 H 0.067 0.933 36 H 0.024 0.976 37 H 0.052 0.948 38 H 0.041 0.959 39 H 0.039 0.961 40 H 0.016 0.984 41 H 0.012 0.988 42 H 0.259 0.741 43 H 0.136 0.864 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.123 -20.150 11.474 24.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.075 3.925 4 C -0.172 4.172 5 C -0.094 4.094 6 C -0.121 4.121 7 C 0.016 3.984 8 H 0.066 0.934 9 C -0.191 4.191 10 N -0.313 5.313 11 C -0.065 4.065 12 C -0.101 4.101 13 H 0.071 0.929 14 C -0.179 4.179 15 C -0.011 4.011 16 C -0.549 4.549 17 H 0.075 0.925 18 C -0.146 4.146 19 N -0.537 5.537 20 Si 0.717 3.283 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.077 4.077 25 C -0.228 4.228 26 H 0.074 0.926 27 H 0.116 0.884 28 H 0.073 0.927 29 H 0.146 0.854 30 H 0.145 0.855 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.157 0.843 35 H 0.085 0.915 36 H 0.042 0.958 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.034 0.966 41 H 0.030 0.970 42 H 0.068 0.932 43 H 0.154 0.846 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.148 -19.840 11.941 24.234 hybrid contribution -0.075 0.284 -1.404 1.435 sum -7.222 -19.556 10.537 23.358 Atomic orbital electron populations 1.23040 0.78463 1.03772 1.01461 1.86047 1.21348 1.27191 1.88895 1.19056 0.92390 0.84094 0.96967 1.20355 0.91337 0.98486 1.07050 1.20873 0.99802 0.91031 0.97715 1.19956 0.93918 0.94765 1.03444 1.20380 0.95117 0.87928 0.95019 0.93378 1.21764 1.02288 1.00520 0.94517 1.60681 1.33717 1.13944 1.22916 1.22202 0.93757 0.92512 0.98002 1.21188 0.97020 0.96320 0.95540 0.92914 1.21578 0.98191 0.99103 0.99033 1.19127 0.93881 0.92764 0.95316 1.21278 0.96170 1.15745 1.21720 0.92534 1.25027 0.94866 0.97512 0.97221 1.69977 1.08979 1.32335 1.42423 0.86579 0.80104 0.80293 0.81291 1.19756 1.21096 1.21139 1.20919 0.94115 0.97232 0.95464 1.21268 0.99977 0.92376 1.09143 0.92582 0.88388 0.92666 0.85422 0.85482 0.92072 0.93004 0.92256 0.84316 0.91470 0.95762 0.92867 0.93982 0.94193 0.96563 0.96956 0.93179 0.84648 0.85584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.33 10.50 -19.41 -0.20 -3.54 16 3 C 0.12 1.33 6.69 -39.21 -0.26 1.07 16 4 C -0.15 -1.66 9.99 -39.43 -0.39 -2.05 16 5 C -0.08 -0.81 9.66 -39.61 -0.38 -1.20 16 6 C -0.12 -1.39 4.71 -104.60 -0.49 -1.89 16 7 C 0.13 1.56 2.81 -68.86 -0.19 1.36 16 8 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 9 C -0.13 -1.56 9.39 37.16 0.35 -1.21 16 10 N -0.68 -9.71 5.15 -107.95 -0.56 -10.26 16 11 C 0.06 1.09 4.87 -3.83 -0.02 1.08 16 12 C -0.08 -1.67 2.48 -90.62 -0.22 -1.89 16 13 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 14 C -0.12 -2.35 8.89 37.16 0.33 -2.02 16 15 C 0.03 0.69 4.45 -27.88 -0.12 0.56 16 16 C -0.51 -14.38 8.41 -34.44 -0.29 -14.67 16 17 H 0.06 1.56 7.05 -52.49 -0.37 1.19 16 18 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 19 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 20 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 21 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 C -0.06 -0.67 9.00 -39.60 -0.36 -1.02 16 25 C -0.21 -2.19 9.04 -39.43 -0.36 -2.55 16 26 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 27 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 29 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 30 H 0.13 1.16 8.03 -52.49 -0.42 0.74 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.74 7.45 -51.93 -0.39 0.35 16 34 H 0.34 4.78 8.00 -39.29 -0.31 4.47 16 35 H 0.07 1.17 7.44 -51.93 -0.39 0.79 16 36 H 0.02 0.43 8.06 -51.93 -0.42 0.01 16 37 H 0.05 1.10 6.95 -51.93 -0.36 0.74 16 38 H 0.04 0.72 7.75 -51.93 -0.40 0.32 16 39 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.14 1.51 7.72 -52.48 -0.41 1.11 16 44 H 0.13 1.07 6.30 -52.49 -0.33 0.74 16 LS Contribution 356.55 15.07 5.37 5.37 Total: -1.00 -30.65 356.55 -8.70 -39.35 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -7.51 Total: 0.49 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: -1.52 Total: -21.80 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.18 Total: -36.68 kcal Atomic # 8 Polarization: -3.33 SS G_CDS: -0.20 Total: -3.54 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.65 -8.70 -39.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602523893.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.733 kcal (2) G-P(sol) polarization free energy of solvation -30.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds