Wall clock time and date at job start Mon Mar 30 2020 01:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35896 * 117.00117 * 2 1 4 4 C 1.38735 * 120.05699 * 179.97438 * 3 2 1 5 5 C 1.38144 * 119.94293 * 179.97438 * 4 3 2 6 6 C 1.38259 * 120.05820 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.94448 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47152 * 19.99825 * 7 6 5 9 9 C 1.53002 * 109.46966 * 259.99965 * 7 6 5 10 10 N 1.46899 * 109.47107 * 139.99738 * 7 6 5 11 11 C 1.46897 * 111.00355 * 204.99940 * 10 7 6 12 12 C 1.52994 * 109.47637 * 180.02562 * 11 10 7 13 13 H 1.09003 * 109.46824 * 305.00320 * 12 11 10 14 14 C 1.53003 * 109.46986 * 64.99713 * 12 11 10 15 15 C 1.52995 * 109.47524 * 185.00264 * 12 11 10 16 16 C 1.50703 * 109.47292 * 175.00011 * 15 12 11 17 17 H 1.07988 * 120.00066 * 0.02562 * 16 15 12 18 18 C 1.37879 * 119.99896 * 179.97438 * 16 15 12 19 19 N 1.31517 * 119.99948 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00006 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47195 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47216 * 119.99850 * 20 18 16 23 23 H 1.48501 * 109.47068 * 240.00257 * 20 18 16 24 24 C 1.38268 * 120.11108 * 0.27026 * 6 5 4 25 25 C 1.38144 * 120.05484 * 359.45075 * 24 6 5 26 26 H 1.09003 * 109.46785 * 60.00410 * 1 2 3 27 27 H 1.09000 * 109.46866 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46927 * 300.00565 * 1 2 3 29 29 H 1.07998 * 120.02275 * 359.95344 * 4 3 2 30 30 H 1.08001 * 119.96827 * 180.02562 * 5 4 3 31 31 H 1.09002 * 109.47075 * 299.99352 * 9 7 6 32 32 H 1.08996 * 109.47407 * 60.00310 * 9 7 6 33 33 H 1.09000 * 109.46986 * 180.02562 * 9 7 6 34 34 H 1.00898 * 111.00393 * 328.95895 * 10 7 6 35 35 H 1.09006 * 109.46948 * 300.00869 * 11 10 7 36 36 H 1.09006 * 109.47033 * 59.99701 * 11 10 7 37 37 H 1.08998 * 109.47223 * 180.02562 * 14 12 11 38 38 H 1.08992 * 109.47539 * 300.00502 * 14 12 11 39 39 H 1.09003 * 109.46844 * 60.00619 * 14 12 11 40 40 H 1.09002 * 109.47029 * 294.99692 * 15 12 11 41 41 H 1.09000 * 109.46875 * 54.99770 * 15 12 11 42 42 H 0.96999 * 120.00260 * 179.97438 * 19 18 16 43 43 H 1.08005 * 119.97073 * 179.70619 * 24 6 5 44 44 H 1.08002 * 120.02545 * 180.27951 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2848 0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3020 3.6757 -0.0005 7 6 3.9862 5.0185 -0.0005 8 1 5.0118 4.9037 -0.3516 9 6 3.9940 5.5869 1.4200 10 7 3.2636 5.9362 -0.8913 11 6 4.1514 6.9960 -1.3879 12 6 3.3648 7.9302 -2.3095 13 1 2.8967 7.3479 -3.1032 14 6 2.2845 8.6525 -1.5020 15 6 4.3154 8.9591 -2.9246 16 6 3.5656 9.8007 -3.9250 17 1 2.5161 9.6201 -4.1038 18 6 4.2195 10.8021 -4.6111 19 7 5.4974 11.0231 -4.3922 20 14 3.2904 11.8448 -5.8516 21 1 1.8756 11.3978 -5.9131 22 1 3.3422 13.2700 -5.4378 23 1 3.9148 11.6950 -7.1906 24 6 1.9212 3.6047 0.0051 25 6 1.2916 2.3751 -0.0002 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 4.0208 0.3798 0.0017 30 1 5.1346 2.5749 0.0000 31 1 2.9684 5.7017 1.7710 32 1 4.5302 4.9059 2.0809 33 1 4.4884 6.5583 1.4199 34 1 2.8351 5.4359 -1.6556 35 1 4.5454 7.5644 -0.5453 36 1 4.9767 6.5487 -1.9419 37 1 1.7238 9.3177 -2.1586 38 1 1.6073 7.9195 -1.0638 39 1 2.7526 9.2347 -0.7082 40 1 4.7156 9.5995 -2.1386 41 1 5.1346 8.4432 -3.4253 42 1 5.9575 11.7273 -4.8752 43 1 1.3343 4.5114 0.0095 44 1 0.2130 2.3202 -0.0003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602523893.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:01 Heat of formation + Delta-G solvation = -51.842089 kcal Electronic energy + Delta-G solvation = -20967.359731 eV Core-core repulsion = 17883.326443 eV Total energy + Delta-G solvation = -3084.033289 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.14419 -39.34191 -37.90539 -35.94855 -34.22494 -32.00721 -31.57926 -29.73381 -28.69252 -28.03546 -26.67199 -24.74879 -23.99783 -22.95541 -21.30237 -20.71402 -19.07709 -18.48882 -17.27045 -17.08660 -16.62537 -16.52788 -16.10279 -15.55561 -15.48636 -15.05926 -14.68378 -14.49931 -14.30752 -14.19690 -13.86103 -13.44377 -13.32910 -13.11969 -13.01831 -12.77232 -12.74766 -12.72309 -12.42835 -12.19660 -12.01662 -11.78528 -11.75231 -11.69738 -11.43134 -11.06210 -10.87373 -10.53238 -9.93043 -9.32093 -9.05397 -8.16878 -6.25743 0.40348 0.45201 1.40167 1.40612 1.53655 2.39939 2.42521 2.78811 3.16624 3.25725 3.77765 3.91245 3.98986 4.19510 4.27812 4.33957 4.39393 4.40278 4.48939 4.52668 4.58744 4.61896 4.74073 4.75664 4.84041 4.93805 4.97470 5.03017 5.06098 5.14079 5.31008 5.31939 5.39777 5.42855 5.49004 5.53398 5.58042 5.66294 5.82592 5.83657 5.90569 6.15073 6.33149 6.46233 6.51881 6.90692 7.42498 8.95444 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.028084 B = 0.002899 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.786171 B = 9657.211183 C =10078.627972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.336 6.336 3 C 0.112 3.888 4 C -0.163 4.163 5 C -0.078 4.078 6 C -0.130 4.130 7 C 0.128 3.872 8 H 0.046 0.954 9 C -0.129 4.129 10 N -0.674 5.674 11 C 0.078 3.922 12 C -0.073 4.073 13 H 0.052 0.948 14 C -0.112 4.112 15 C 0.032 3.968 16 C -0.526 4.526 17 H 0.061 0.939 18 C -0.004 4.004 19 N -0.936 5.936 20 Si 0.961 3.039 21 H -0.261 1.261 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.065 4.065 25 C -0.211 4.211 26 H 0.061 0.939 27 H 0.118 0.882 28 H 0.064 0.936 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.342 0.658 35 H 0.063 0.937 36 H 0.016 0.984 37 H 0.036 0.964 38 H 0.068 0.932 39 H 0.034 0.966 40 H -0.010 1.010 41 H -0.015 1.015 42 H 0.261 0.739 43 H 0.136 0.864 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.739 -21.176 11.663 25.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.251 6.251 3 C 0.067 3.933 4 C -0.182 4.182 5 C -0.097 4.097 6 C -0.131 4.131 7 C 0.018 3.982 8 H 0.064 0.936 9 C -0.187 4.187 10 N -0.306 5.306 11 C -0.051 4.051 12 C -0.092 4.092 13 H 0.070 0.930 14 C -0.169 4.169 15 C -0.006 4.006 16 C -0.564 4.564 17 H 0.079 0.921 18 C -0.201 4.201 19 N -0.577 5.577 20 Si 0.786 3.214 21 H -0.185 1.185 22 H -0.205 1.205 23 H -0.206 1.206 24 C -0.084 4.084 25 C -0.229 4.229 26 H 0.080 0.920 27 H 0.137 0.863 28 H 0.082 0.918 29 H 0.157 0.843 30 H 0.158 0.842 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.160 0.840 35 H 0.082 0.918 36 H 0.034 0.966 37 H 0.055 0.945 38 H 0.087 0.913 39 H 0.054 0.946 40 H 0.008 0.992 41 H 0.003 0.997 42 H 0.070 0.930 43 H 0.154 0.846 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.782 -20.884 12.140 25.703 hybrid contribution 0.416 0.516 -1.431 1.577 sum -8.366 -20.368 10.709 24.485 Atomic orbital electron populations 1.23318 0.76607 1.05476 1.02155 1.86032 1.23343 1.26926 1.88750 1.19254 0.92743 0.84614 0.96725 1.20579 0.91692 0.98949 1.06953 1.21035 1.00563 0.90781 0.97284 1.19886 0.94185 0.94355 1.04653 1.20376 0.94861 0.88149 0.94772 0.93618 1.21734 1.02324 1.00317 0.94335 1.60620 1.33055 1.14003 1.22883 1.21887 0.93370 0.92802 0.97035 1.20995 0.96418 0.95592 0.96159 0.92988 1.21472 0.97873 0.99229 0.98316 1.19023 0.94022 0.93327 0.94233 1.21671 0.96537 1.16121 1.22117 0.92101 1.25959 0.95752 0.98989 0.99381 1.70110 1.10694 1.33181 1.43729 0.85458 0.79130 0.78347 0.78492 1.18532 1.20546 1.20594 1.20976 0.94033 0.97615 0.95728 1.21452 1.00998 0.91878 1.08601 0.92017 0.86331 0.91774 0.84328 0.84153 0.92158 0.91515 0.93246 0.84001 0.91811 0.96592 0.94523 0.91315 0.94644 0.99153 0.99686 0.92976 0.84647 0.83767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.34 -6.43 10.50 -92.38 -0.97 -7.40 16 3 C 0.11 2.31 6.69 22.51 0.15 2.46 16 4 C -0.16 -3.29 9.99 22.37 0.22 -3.07 16 5 C -0.08 -1.57 9.66 22.25 0.21 -1.36 16 6 C -0.13 -2.84 4.71 -19.85 -0.09 -2.93 16 7 C 0.13 3.03 2.81 44.17 0.12 3.15 16 8 H 0.05 1.12 7.66 -2.39 -0.02 1.11 16 9 C -0.13 -2.87 9.39 71.98 0.68 -2.20 16 10 N -0.67 -18.47 5.15 -495.44 -2.55 -21.02 16 11 C 0.08 2.67 4.87 86.30 0.42 3.09 16 12 C -0.07 -2.97 2.48 -10.80 -0.03 -3.00 16 13 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 14 C -0.11 -4.23 8.89 71.98 0.64 -3.59 16 15 C 0.03 1.67 4.45 29.85 0.13 1.80 16 16 C -0.53 -29.97 8.41 25.60 0.22 -29.75 16 17 H 0.06 3.34 7.05 -2.92 -0.02 3.32 16 18 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 19 N -0.94 -57.69 13.29 21.45 0.28 -57.40 16 20 Si 0.96 44.80 29.54 68.60 2.03 46.82 16 21 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 22 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 23 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 24 C -0.07 -1.37 9.00 22.25 0.20 -1.17 16 25 C -0.21 -4.05 9.04 22.37 0.20 -3.85 16 26 H 0.06 0.61 7.66 -2.39 -0.02 0.59 16 27 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 0.59 7.66 -2.39 -0.02 0.57 16 29 H 0.14 2.39 8.06 -2.91 -0.02 2.36 16 30 H 0.14 2.34 8.03 -2.91 -0.02 2.32 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.05 1.19 7.45 -2.39 -0.02 1.17 16 34 H 0.34 9.18 8.00 -89.70 -0.72 8.47 16 35 H 0.06 2.23 7.44 -2.38 -0.02 2.21 16 36 H 0.02 0.57 8.06 -2.38 -0.02 0.55 16 37 H 0.04 1.49 6.95 -2.39 -0.02 1.47 16 38 H 0.07 2.23 7.75 -2.39 -0.02 2.21 16 39 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 40 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 41 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 42 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 43 H 0.14 2.80 7.72 -2.91 -0.02 2.77 16 44 H 0.14 2.13 6.30 -2.91 -0.02 2.11 16 Total: -1.00 -65.63 356.55 3.69 -61.94 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 0.24 Total: 15.89 kcal Atomic # 6 Polarization: -43.49 SS G_CDS: 4.65 Total: -38.84 kcal Atomic # 7 Polarization: -76.16 SS G_CDS: -2.27 Total: -78.42 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -0.97 Total: -7.40 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -65.63 3.69 -61.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602523893.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.102 kcal (2) G-P(sol) polarization free energy of solvation -65.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds