Wall clock time and date at job start Mon Mar 30 2020 02:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42904 * 109.47009 * 2 1 4 4 C 1.35898 * 116.99940 * 179.97438 * 3 2 1 5 5 C 1.38747 * 120.05546 * 0.02562 * 4 3 2 6 6 C 1.38125 * 119.94590 * 179.97438 * 5 4 3 7 7 C 1.38289 * 120.05159 * 359.97438 * 6 5 4 8 8 C 1.38243 * 120.11362 * 359.97438 * 7 6 5 9 9 C 1.38163 * 120.05442 * 0.02562 * 8 7 6 10 10 C 1.50706 * 120.02719 * 180.02562 * 9 8 7 11 11 N 1.46906 * 109.46672 * 259.97381 * 10 9 8 12 12 C 1.46898 * 110.99969 * 179.97438 * 11 10 9 13 13 C 1.52995 * 109.47373 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.46841 * 55.00394 * 13 12 11 15 15 C 1.53001 * 109.47249 * 295.00279 * 13 12 11 16 16 C 1.52999 * 109.47362 * 175.00128 * 13 12 11 17 17 C 1.50695 * 109.47249 * 185.00225 * 16 13 12 18 18 H 1.08001 * 119.99923 * 359.97438 * 17 16 13 19 19 C 1.37882 * 120.00140 * 179.97438 * 17 16 13 20 20 N 1.31512 * 119.99663 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99957 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47049 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46846 * 120.00381 * 21 19 17 24 24 H 1.48503 * 109.46857 * 239.99951 * 21 19 17 25 25 H 1.08998 * 109.47492 * 59.99955 * 1 2 3 26 26 H 1.09004 * 109.46901 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47276 * 299.99925 * 1 2 3 28 28 H 1.08999 * 109.47276 * 240.00075 * 2 1 3 29 29 H 1.08995 * 109.46990 * 120.00117 * 2 1 3 30 30 H 1.08000 * 120.03041 * 359.95195 * 5 4 3 31 31 H 1.07993 * 119.97844 * 179.72247 * 6 5 4 32 32 H 1.08004 * 119.94552 * 179.97438 * 7 6 5 33 33 H 1.08001 * 119.97523 * 179.97438 * 8 7 6 34 34 H 1.08993 * 109.47379 * 19.96866 * 10 9 8 35 35 H 1.08998 * 109.47588 * 139.97808 * 10 9 8 36 36 H 1.00903 * 110.99722 * 303.95123 * 11 10 9 37 37 H 1.09005 * 109.47243 * 300.00503 * 12 11 10 38 38 H 1.09005 * 109.46701 * 59.99653 * 12 11 10 39 39 H 1.08998 * 109.47095 * 179.97438 * 15 13 12 40 40 H 1.09002 * 109.47293 * 299.99838 * 15 13 12 41 41 H 1.09003 * 109.47156 * 59.99772 * 15 13 12 42 42 H 1.08999 * 109.47196 * 305.00379 * 16 13 12 43 43 H 1.09000 * 109.47055 * 65.00153 * 16 13 12 44 44 H 0.97004 * 119.99652 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1999 0.4259 0.0005 6 6 5.5689 0.6095 0.0005 7 6 6.0961 1.8879 0.0000 8 6 5.2551 2.9851 -0.0010 9 6 3.8850 2.8066 -0.0010 10 6 2.9687 4.0031 -0.0028 11 7 2.4793 4.2470 1.3608 12 6 1.5815 5.4091 1.3979 13 6 1.0930 5.6306 2.8307 14 1 1.9508 5.7228 3.4968 15 6 0.2343 4.4416 3.2664 16 6 0.2591 6.9119 2.8929 17 6 -0.1190 7.1962 4.3237 18 1 0.2029 6.5295 5.1100 19 6 -0.8759 8.3076 4.6290 20 7 -1.2682 9.1191 3.6714 21 14 -1.3451 8.6596 6.4025 22 1 -0.7846 7.6025 7.2820 23 1 -0.7988 9.9801 6.8063 24 1 -2.8247 8.6764 6.5290 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.7886 -0.5727 0.0009 31 1 6.2280 -0.2459 0.0051 32 1 7.1668 2.0295 0.0005 33 1 5.6692 3.9825 -0.0010 34 1 3.5146 4.8784 -0.3547 35 1 2.1231 3.8123 -0.6635 36 1 2.0253 3.4268 1.7340 37 1 2.1182 6.2940 1.0556 38 1 0.7263 5.2284 0.7466 39 1 -0.1134 4.5993 4.2873 40 1 -0.6236 4.3495 2.6002 41 1 0.8283 3.5288 3.2221 42 1 0.8421 7.7443 2.4989 43 1 -0.6445 6.7866 2.2963 44 1 -1.8004 9.9012 3.8862 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602530729.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:29 Heat of formation + Delta-G solvation = -37.752596 kcal Electronic energy + Delta-G solvation = -21243.436099 eV Core-core repulsion = 18160.013777 eV Total energy + Delta-G solvation = -3083.422322 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.39042 -37.73275 -36.75826 -34.17831 -32.37266 -31.88050 -30.73628 -29.58875 -26.92839 -26.00623 -24.29685 -24.15672 -22.15509 -21.70445 -21.15126 -18.92250 -18.21454 -16.49211 -16.30246 -16.13472 -15.89613 -15.02201 -14.65767 -14.60693 -14.18182 -13.79919 -13.67383 -13.35895 -13.06796 -12.80374 -12.63185 -12.31677 -12.04111 -11.95132 -11.81737 -11.74658 -11.45770 -11.22501 -10.94508 -10.85158 -10.78119 -10.68001 -10.27414 -10.11693 -9.65169 -9.14654 -8.97482 -8.87192 -8.28720 -8.28571 -7.95233 -5.93310 -3.93989 1.21948 1.34714 3.04280 3.35051 3.42460 3.46936 3.64095 4.50587 4.58348 4.65165 4.68303 4.78037 4.88743 4.95631 5.00900 5.16489 5.23538 5.35790 5.42540 5.57018 5.57301 5.61528 5.74292 5.85297 5.87892 5.92826 5.98798 6.14027 6.20978 6.34626 6.36127 6.48826 6.56000 6.64914 6.70260 7.03122 7.17565 7.24757 7.29176 7.48682 7.75538 7.80148 7.93220 8.07779 8.52078 9.12718 9.69119 11.18312 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022604 B = 0.003348 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.417513 B = 8360.225303 C = 9030.069356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.056 3.944 3 O -0.312 6.312 4 C 0.134 3.866 5 C -0.211 4.211 6 C -0.086 4.086 7 C -0.160 4.160 8 C -0.064 4.064 9 C -0.106 4.106 10 C 0.105 3.895 11 N -0.684 5.684 12 C 0.064 3.936 13 C -0.084 4.084 14 H 0.064 0.936 15 C -0.133 4.133 16 C 0.028 3.972 17 C -0.510 4.510 18 H 0.057 0.943 19 C 0.054 3.946 20 N -0.897 5.897 21 Si 0.889 3.111 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.285 1.285 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.124 0.876 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.130 0.870 34 H 0.076 0.924 35 H 0.038 0.962 36 H 0.341 0.659 37 H 0.066 0.934 38 H 0.023 0.977 39 H 0.061 0.939 40 H 0.040 0.960 41 H 0.031 0.969 42 H 0.015 0.985 43 H 0.014 0.986 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.333 -19.722 -10.420 24.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.019 4.019 3 O -0.226 6.226 4 C 0.088 3.912 5 C -0.230 4.230 6 C -0.104 4.104 7 C -0.178 4.178 8 C -0.083 4.083 9 C -0.107 4.107 10 C -0.024 4.024 11 N -0.315 5.315 12 C -0.064 4.064 13 C -0.102 4.102 14 H 0.083 0.917 15 C -0.190 4.190 16 C -0.010 4.010 17 C -0.549 4.549 18 H 0.075 0.925 19 C -0.146 4.146 20 N -0.537 5.537 21 Si 0.717 3.283 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.212 1.212 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.142 0.858 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.148 0.852 34 H 0.095 0.905 35 H 0.056 0.944 36 H 0.160 0.840 37 H 0.085 0.915 38 H 0.041 0.959 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.050 0.950 42 H 0.033 0.967 43 H 0.032 0.968 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 10.604 -19.055 -10.266 24.103 hybrid contribution -1.010 -0.376 0.525 1.199 sum 9.594 -19.431 -9.741 23.759 Atomic orbital electron populations 1.21784 0.92618 1.02760 1.03916 1.22765 0.96007 0.82017 1.01112 1.86106 1.18918 1.29131 1.88436 1.18870 0.82355 0.93653 0.96296 1.21174 0.94454 0.97764 1.09632 1.20890 0.94229 0.97280 0.98004 1.21041 0.99798 0.92473 1.04471 1.20927 0.91637 0.99280 0.96463 1.19282 0.94358 0.92023 1.05027 1.20688 0.96123 0.94368 0.91251 1.60679 1.42967 1.08612 1.19285 1.22139 0.93286 0.92364 0.98614 1.21211 0.98428 0.97438 0.93168 0.91712 1.21726 0.98652 0.96476 1.02145 1.19114 0.94291 0.90615 0.96960 1.21291 1.31999 1.08389 0.93207 0.92525 1.25026 0.96278 0.96346 0.96971 1.69981 1.37625 1.14434 1.31684 0.86579 0.78079 0.78154 0.85458 1.19753 1.21105 1.21158 0.91526 0.90472 0.91138 0.92316 0.92071 0.85777 0.86111 0.86007 0.85207 0.90535 0.94400 0.84025 0.91538 0.95878 0.91979 0.94065 0.95026 0.96656 0.96762 0.93205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.28 37.16 0.38 -0.84 16 2 C 0.06 0.50 5.46 37.16 0.20 0.70 16 3 O -0.31 -3.88 9.32 -19.42 -0.18 -4.06 16 4 C 0.13 1.68 6.66 -39.22 -0.26 1.42 16 5 C -0.21 -2.23 9.04 -39.43 -0.36 -2.58 16 6 C -0.09 -0.83 10.04 -39.60 -0.40 -1.23 16 7 C -0.16 -1.61 10.04 -39.56 -0.40 -2.01 16 8 C -0.06 -0.75 9.66 -39.61 -0.38 -1.13 16 9 C -0.11 -1.39 5.41 -104.47 -0.56 -1.95 16 10 C 0.10 1.49 5.48 -4.97 -0.03 1.46 16 11 N -0.68 -11.22 6.49 -115.05 -0.75 -11.97 16 12 C 0.06 1.19 5.14 -3.83 -0.02 1.17 16 13 C -0.08 -1.79 2.54 -90.62 -0.23 -2.02 16 14 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 15 C -0.13 -2.61 8.77 37.16 0.33 -2.28 16 16 C 0.03 0.73 4.45 -27.89 -0.12 0.60 16 17 C -0.51 -14.58 8.41 -34.44 -0.29 -14.87 16 18 H 0.06 1.58 7.06 -52.49 -0.37 1.21 16 19 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 20 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 21 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 22 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 29 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 30 H 0.12 1.04 6.30 -52.49 -0.33 0.71 16 31 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 32 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 33 H 0.13 1.33 8.04 -52.49 -0.42 0.91 16 34 H 0.08 1.03 8.00 -51.93 -0.42 0.61 16 35 H 0.04 0.56 7.85 -51.93 -0.41 0.15 16 36 H 0.34 5.63 6.92 -39.29 -0.27 5.36 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 1.30 6.95 -51.93 -0.36 0.94 16 40 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.03 0.54 6.68 -51.93 -0.35 0.19 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 357.62 15.07 5.39 5.39 Total: -1.00 -31.33 357.62 -9.57 -40.90 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -7.51 Total: 1.46 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: -2.24 Total: -22.07 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: -0.01 Total: -38.61 kcal Atomic # 8 Polarization: -3.88 SS G_CDS: -0.18 Total: -4.06 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.33 -9.57 -40.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602530729.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.148 kcal (2) G-P(sol) polarization free energy of solvation -31.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds