Wall clock time and date at job start Mon Mar 30 2020 02:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42904 * 109.47009 * 2 1 4 4 C 1.35898 * 116.99940 * 179.97438 * 3 2 1 5 5 C 1.38747 * 120.05546 * 0.02562 * 4 3 2 6 6 C 1.38125 * 119.94590 * 179.97438 * 5 4 3 7 7 C 1.38289 * 120.05159 * 359.97438 * 6 5 4 8 8 C 1.38243 * 120.11362 * 359.97438 * 7 6 5 9 9 C 1.38163 * 120.05442 * 0.02562 * 8 7 6 10 10 C 1.50706 * 120.02719 * 180.02562 * 9 8 7 11 11 N 1.46906 * 109.46672 * 259.97381 * 10 9 8 12 12 C 1.46898 * 110.99969 * 179.97438 * 11 10 9 13 13 C 1.52995 * 109.47373 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.46841 * 55.00394 * 13 12 11 15 15 C 1.53001 * 109.47249 * 295.00279 * 13 12 11 16 16 C 1.52999 * 109.47362 * 175.00128 * 13 12 11 17 17 C 1.50695 * 109.47249 * 185.00225 * 16 13 12 18 18 H 1.08001 * 119.99923 * 359.97438 * 17 16 13 19 19 C 1.37882 * 120.00140 * 179.97438 * 17 16 13 20 20 N 1.31512 * 119.99663 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99957 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47049 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46846 * 120.00381 * 21 19 17 24 24 H 1.48503 * 109.46857 * 239.99951 * 21 19 17 25 25 H 1.08998 * 109.47492 * 59.99955 * 1 2 3 26 26 H 1.09004 * 109.46901 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47276 * 299.99925 * 1 2 3 28 28 H 1.08999 * 109.47276 * 240.00075 * 2 1 3 29 29 H 1.08995 * 109.46990 * 120.00117 * 2 1 3 30 30 H 1.08000 * 120.03041 * 359.95195 * 5 4 3 31 31 H 1.07993 * 119.97844 * 179.72247 * 6 5 4 32 32 H 1.08004 * 119.94552 * 179.97438 * 7 6 5 33 33 H 1.08001 * 119.97523 * 179.97438 * 8 7 6 34 34 H 1.08993 * 109.47379 * 19.96866 * 10 9 8 35 35 H 1.08998 * 109.47588 * 139.97808 * 10 9 8 36 36 H 1.00903 * 110.99722 * 303.95123 * 11 10 9 37 37 H 1.09005 * 109.47243 * 300.00503 * 12 11 10 38 38 H 1.09005 * 109.46701 * 59.99653 * 12 11 10 39 39 H 1.08998 * 109.47095 * 179.97438 * 15 13 12 40 40 H 1.09002 * 109.47293 * 299.99838 * 15 13 12 41 41 H 1.09003 * 109.47156 * 59.99772 * 15 13 12 42 42 H 1.08999 * 109.47196 * 305.00379 * 16 13 12 43 43 H 1.09000 * 109.47055 * 65.00153 * 16 13 12 44 44 H 0.97004 * 119.99652 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1999 0.4259 0.0005 6 6 5.5689 0.6095 0.0005 7 6 6.0961 1.8879 0.0000 8 6 5.2551 2.9851 -0.0010 9 6 3.8850 2.8066 -0.0010 10 6 2.9687 4.0031 -0.0028 11 7 2.4793 4.2470 1.3608 12 6 1.5815 5.4091 1.3979 13 6 1.0930 5.6306 2.8307 14 1 1.9508 5.7228 3.4968 15 6 0.2343 4.4416 3.2664 16 6 0.2591 6.9119 2.8929 17 6 -0.1190 7.1962 4.3237 18 1 0.2029 6.5295 5.1100 19 6 -0.8759 8.3076 4.6290 20 7 -1.2682 9.1191 3.6714 21 14 -1.3451 8.6596 6.4025 22 1 -0.7846 7.6025 7.2820 23 1 -0.7988 9.9801 6.8063 24 1 -2.8247 8.6764 6.5290 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.7886 -0.5727 0.0009 31 1 6.2280 -0.2459 0.0051 32 1 7.1668 2.0295 0.0005 33 1 5.6692 3.9825 -0.0010 34 1 3.5146 4.8784 -0.3547 35 1 2.1231 3.8123 -0.6635 36 1 2.0253 3.4268 1.7340 37 1 2.1182 6.2940 1.0556 38 1 0.7263 5.2284 0.7466 39 1 -0.1134 4.5993 4.2873 40 1 -0.6236 4.3495 2.6002 41 1 0.8283 3.5288 3.2221 42 1 0.8421 7.7443 2.4989 43 1 -0.6445 6.7866 2.2963 44 1 -1.8004 9.9012 3.8862 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602530729.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:29 Heat of formation + Delta-G solvation = -55.849706 kcal Electronic energy + Delta-G solvation = -21244.220849 eV Core-core repulsion = 18160.013777 eV Total energy + Delta-G solvation = -3084.207072 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.21927 -38.67705 -38.17505 -35.78112 -34.14992 -32.73931 -31.86049 -30.45328 -28.88343 -27.39965 -25.79170 -24.94206 -23.88825 -22.52187 -22.07259 -20.67060 -19.03361 -18.53405 -17.25438 -17.05478 -16.87136 -16.58491 -16.18094 -15.69929 -15.44132 -15.12657 -14.75021 -14.38537 -14.30152 -14.13585 -13.87769 -13.45089 -13.38265 -13.25217 -13.04437 -12.85309 -12.75185 -12.61525 -12.55972 -12.26441 -12.21839 -11.91280 -11.63640 -11.61754 -11.51238 -11.07764 -10.93307 -10.53546 -9.84125 -9.36505 -9.04869 -8.16879 -6.26033 0.38935 0.53178 1.40361 1.40791 1.54179 2.29904 2.42699 2.79183 3.16415 3.45974 3.83326 3.88552 4.05725 4.05907 4.19714 4.21480 4.27344 4.34673 4.40505 4.41904 4.45866 4.59127 4.70681 4.72389 4.78348 4.86800 4.92712 4.94921 5.01525 5.09792 5.21093 5.22880 5.36653 5.41568 5.45544 5.55051 5.55659 5.65362 5.79436 5.89265 5.92447 6.06907 6.31745 6.45121 6.52220 6.89710 7.42082 8.95520 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022604 B = 0.003348 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.417513 B = 8360.225303 C = 9030.069356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.049 3.951 3 O -0.335 6.335 4 C 0.119 3.881 5 C -0.215 4.215 6 C -0.083 4.083 7 C -0.162 4.162 8 C -0.075 4.075 9 C -0.132 4.132 10 C 0.110 3.890 11 N -0.681 5.681 12 C 0.077 3.923 13 C -0.075 4.075 14 H 0.056 0.944 15 C -0.123 4.123 16 C 0.034 3.966 17 C -0.528 4.528 18 H 0.061 0.939 19 C -0.003 4.003 20 N -0.936 5.936 21 Si 0.963 3.037 22 H -0.262 1.262 23 H -0.279 1.279 24 H -0.279 1.279 25 H 0.058 0.942 26 H 0.102 0.898 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.146 0.854 31 H 0.151 0.849 32 H 0.146 0.854 33 H 0.136 0.864 34 H 0.080 0.920 35 H 0.029 0.971 36 H 0.341 0.659 37 H 0.061 0.939 38 H 0.019 0.981 39 H 0.047 0.953 40 H 0.039 0.961 41 H 0.059 0.941 42 H -0.012 1.012 43 H -0.011 1.011 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.487 -21.898 -9.754 26.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 O -0.250 6.250 4 C 0.073 3.927 5 C -0.233 4.233 6 C -0.101 4.101 7 C -0.180 4.180 8 C -0.093 4.093 9 C -0.133 4.133 10 C -0.019 4.019 11 N -0.313 5.313 12 C -0.052 4.052 13 C -0.093 4.093 14 H 0.075 0.925 15 C -0.181 4.181 16 C -0.004 4.004 17 C -0.566 4.566 18 H 0.079 0.921 19 C -0.200 4.200 20 N -0.577 5.577 21 Si 0.787 3.213 22 H -0.186 1.186 23 H -0.205 1.205 24 H -0.205 1.205 25 H 0.077 0.923 26 H 0.120 0.880 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.163 0.837 31 H 0.169 0.831 32 H 0.164 0.836 33 H 0.154 0.846 34 H 0.098 0.902 35 H 0.047 0.953 36 H 0.160 0.840 37 H 0.079 0.921 38 H 0.037 0.963 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.078 0.922 42 H 0.006 0.994 43 H 0.008 0.992 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.769 -21.252 -9.606 26.123 hybrid contribution -1.328 0.250 0.254 1.375 sum 10.441 -21.001 -9.352 25.249 Atomic orbital electron populations 1.21813 0.92255 1.04058 1.02780 1.23002 0.96325 0.80886 1.02301 1.86079 1.19127 1.31187 1.88586 1.19062 0.82753 0.94055 0.96823 1.21471 0.94774 0.98161 1.08943 1.21308 0.94341 0.98165 0.96275 1.21365 1.00901 0.92223 1.03544 1.21116 0.91316 1.00357 0.96554 1.19274 0.94813 0.91798 1.07423 1.20643 0.96160 0.95502 0.89594 1.60639 1.41850 1.07750 1.21029 1.21863 0.93519 0.93356 0.96471 1.21010 0.97547 0.95824 0.94962 0.92532 1.21613 0.98661 0.96766 1.01035 1.18994 0.93538 0.92194 0.95644 1.21661 1.32088 1.08675 0.94184 0.92120 1.25968 0.96161 0.96113 1.01787 1.70114 1.38345 1.15028 1.34169 0.85432 0.77900 0.78232 0.79699 1.18584 1.20501 1.20459 0.92314 0.87959 0.92566 0.90781 0.91062 0.83682 0.83117 0.83638 0.84641 0.90208 0.95258 0.84005 0.92088 0.96255 0.93368 0.94159 0.92235 0.99384 0.99215 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 10.28 71.98 0.74 -1.52 16 2 C 0.05 0.80 5.46 71.98 0.39 1.19 16 3 O -0.34 -8.13 9.32 -92.40 -0.86 -8.99 16 4 C 0.12 2.85 6.66 22.50 0.15 3.00 16 5 C -0.21 -4.02 9.04 22.36 0.20 -3.81 16 6 C -0.08 -1.35 10.04 22.25 0.22 -1.12 16 7 C -0.16 -2.87 10.04 22.28 0.22 -2.65 16 8 C -0.07 -1.64 9.66 22.25 0.22 -1.43 16 9 C -0.13 -3.40 5.41 -19.77 -0.11 -3.50 16 10 C 0.11 3.15 5.48 85.56 0.47 3.62 16 11 N -0.68 -22.34 6.49 -517.92 -3.36 -25.70 16 12 C 0.08 2.91 5.14 86.30 0.44 3.36 16 13 C -0.07 -3.25 2.54 -10.80 -0.03 -3.27 16 14 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 15 C -0.12 -4.83 8.77 71.98 0.63 -4.20 16 16 C 0.03 1.85 4.45 29.85 0.13 1.98 16 17 C -0.53 -30.64 8.41 25.60 0.22 -30.43 16 18 H 0.06 3.40 7.06 -2.91 -0.02 3.38 16 19 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 20 N -0.94 -58.21 13.29 21.45 0.28 -57.92 16 21 Si 0.96 45.29 29.54 68.60 2.03 47.31 16 22 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 23 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 24 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 25 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.07 0.96 7.66 -2.39 -0.02 0.94 16 29 H 0.07 1.00 7.66 -2.39 -0.02 0.98 16 30 H 0.15 1.99 6.30 -2.91 -0.02 1.97 16 31 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 32 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 33 H 0.14 2.67 8.04 -2.91 -0.02 2.65 16 34 H 0.08 2.18 8.00 -2.39 -0.02 2.16 16 35 H 0.03 0.88 7.85 -2.39 -0.02 0.86 16 36 H 0.34 11.13 6.92 -89.69 -0.62 10.51 16 37 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 38 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 39 H 0.05 2.00 6.95 -2.39 -0.02 1.98 16 40 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.06 1.99 6.68 -2.39 -0.02 1.97 16 42 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 43 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 44 H 0.26 15.26 8.31 -92.70 -0.77 14.49 16 Total: -1.00 -68.08 357.62 2.80 -65.28 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: 0.34 Total: 18.54 kcal Atomic # 6 Polarization: -42.89 SS G_CDS: 4.37 Total: -38.52 kcal Atomic # 7 Polarization: -80.55 SS G_CDS: -3.08 Total: -83.63 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: -0.86 Total: -8.99 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -68.08 2.80 -65.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602530729.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.434 kcal (2) G-P(sol) polarization free energy of solvation -68.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds