Wall clock time and date at job start Mon Mar 30 2020 01:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46848 * 2 1 4 4 C 1.52997 * 109.46990 * 119.99527 * 2 1 3 5 5 C 1.50704 * 109.47195 * 295.00543 * 4 2 1 6 6 H 1.07999 * 119.99990 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99516 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00412 * 359.97438 * 7 5 4 9 9 Si 1.86810 * 119.99637 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47086 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46719 * 120.00199 * 9 7 5 12 12 H 1.48495 * 109.47075 * 239.99820 * 9 7 5 13 13 C 1.52993 * 109.47391 * 240.00052 * 2 1 3 14 14 N 1.46901 * 109.47302 * 64.99822 * 13 2 1 15 15 C 1.46904 * 110.99674 * 180.02562 * 14 13 2 16 16 C 1.52996 * 109.47306 * 60.00138 * 15 14 13 17 17 C 1.53005 * 109.47019 * 299.99663 * 15 14 13 18 18 O 1.42898 * 109.47112 * 305.00217 * 17 15 14 19 19 C 1.50706 * 109.46659 * 180.02562 * 15 14 13 20 20 C 1.38238 * 119.99744 * 180.02562 * 19 15 14 21 21 C 1.38234 * 119.99693 * 179.97438 * 20 19 15 22 22 C 1.38234 * 120.00240 * 359.97438 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.26327 * 22 21 20 24 24 C 1.38234 * 120.00173 * 359.97438 * 19 15 14 25 25 H 1.09009 * 109.47202 * 60.00691 * 1 2 3 26 26 H 1.09001 * 109.46848 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47554 * 300.00307 * 1 2 3 28 28 H 1.09000 * 109.46876 * 55.00257 * 4 2 1 29 29 H 1.09000 * 109.46982 * 175.00131 * 4 2 1 30 30 H 0.97004 * 119.99830 * 179.97438 * 8 7 5 31 31 H 1.09003 * 109.47417 * 304.99736 * 13 2 1 32 32 H 1.09008 * 109.47173 * 185.00128 * 13 2 1 33 33 H 1.00899 * 110.99888 * 56.05005 * 14 13 2 34 34 H 1.09004 * 109.46878 * 180.02562 * 16 15 14 35 35 H 1.09001 * 109.47174 * 299.99868 * 16 15 14 36 36 H 1.08998 * 109.47164 * 59.99704 * 16 15 14 37 37 H 1.08996 * 109.46949 * 65.00651 * 17 15 14 38 38 H 1.09004 * 109.46610 * 185.00339 * 17 15 14 39 39 H 0.96706 * 113.99636 * 179.97438 * 18 17 15 40 40 H 1.07997 * 119.99846 * 359.97438 * 20 19 15 41 41 H 1.07999 * 119.99751 * 179.97438 * 21 20 19 42 42 H 1.08002 * 119.99744 * 179.97438 * 22 21 20 43 43 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 44 44 H 1.07999 * 120.00025 * 0.02562 * 24 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6411 0.0572 2.4766 6 1 1.0804 0.9747 2.3756 7 6 1.9931 -0.4016 3.7283 8 7 2.6763 -1.5185 3.8512 9 14 1.4994 0.5636 5.2496 10 1 0.7418 1.7745 4.8434 11 1 0.6457 -0.2854 6.1189 12 1 2.7176 0.9685 5.9959 13 6 2.0400 -0.7212 -1.2492 14 7 1.6514 0.0374 -2.4456 15 6 2.1249 -0.6272 -3.6671 16 6 1.5152 -2.0277 -3.7548 17 6 3.6506 -0.7365 -3.6296 18 8 4.2163 0.5606 -3.4308 19 6 1.7089 0.1786 -4.8708 20 6 2.0438 -0.2529 -6.1407 21 6 1.6618 0.4859 -7.2448 22 6 0.9445 1.6559 -7.0791 23 6 0.6139 2.0900 -5.8090 24 6 0.9917 1.3486 -4.7051 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.6053 -1.7197 1.2952 29 1 3.1263 -0.7993 1.2056 30 1 2.9242 -1.8410 4.7318 31 1 1.6055 -1.7198 -1.2951 32 1 3.1264 -0.7994 -1.2055 33 1 1.9882 0.9873 -2.3967 34 1 1.8670 -2.5210 -4.6610 35 1 1.8164 -2.6103 -2.8841 36 1 0.4284 -1.9498 -3.7815 37 1 3.9479 -1.3919 -2.8111 38 1 4.0086 -1.1483 -4.5732 39 1 5.1827 0.5671 -3.3962 40 1 2.6038 -1.1672 -6.2702 41 1 1.9237 0.1490 -8.2369 42 1 0.6464 2.2334 -7.9418 43 1 0.0573 3.0064 -5.6793 44 1 0.7297 1.6855 -3.7130 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602544414.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:04 Heat of formation + Delta-G solvation = -57.863228 kcal Electronic energy + Delta-G solvation = -21907.725290 eV Core-core repulsion = 18823.430905 eV Total energy + Delta-G solvation = -3084.294385 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.96229 -38.79930 -37.36486 -35.93152 -34.34920 -32.20464 -31.52995 -30.07952 -28.72060 -27.16344 -26.76974 -24.87601 -23.37652 -23.00637 -20.84898 -20.25772 -18.52816 -18.29310 -17.99181 -16.77924 -16.45720 -16.36716 -16.00654 -15.61144 -15.15521 -15.06078 -14.77913 -14.33742 -14.28589 -13.99593 -13.54381 -13.38690 -13.27795 -13.20903 -12.90822 -12.76521 -12.72970 -12.60687 -12.44797 -12.19330 -11.96963 -11.74451 -11.59836 -11.36278 -11.08255 -10.94993 -10.87269 -10.53655 -9.70914 -9.55883 -9.23355 -8.17504 -6.26209 0.55652 0.62059 1.39476 1.39998 1.53167 2.42021 2.96093 3.04523 3.15957 3.49078 3.67000 4.09453 4.11715 4.17711 4.25692 4.35522 4.36743 4.43033 4.44925 4.51707 4.59066 4.68546 4.73660 4.84876 4.92178 4.96621 5.00238 5.04944 5.21729 5.24500 5.26633 5.32350 5.47411 5.51336 5.57248 5.65466 5.72624 5.75815 5.83051 5.89734 6.16611 6.24053 6.34121 6.47984 6.81115 6.89688 7.41954 8.94742 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030636 B = 0.003592 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.742019 B = 7792.401999 C = 8113.433835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.073 4.073 3 H 0.046 0.954 4 C 0.036 3.964 5 C -0.528 4.528 6 H 0.059 0.941 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.960 3.040 10 H -0.263 1.263 11 H -0.279 1.279 12 H -0.279 1.279 13 C 0.077 3.923 14 N -0.665 5.665 15 C 0.151 3.849 16 C -0.134 4.134 17 C 0.051 3.949 18 O -0.583 6.583 19 C -0.068 4.068 20 C -0.125 4.125 21 C -0.126 4.126 22 C -0.133 4.133 23 C -0.132 4.132 24 C -0.119 4.119 25 H 0.065 0.935 26 H 0.036 0.964 27 H 0.036 0.964 28 H -0.009 1.009 29 H -0.016 1.016 30 H 0.262 0.738 31 H 0.067 0.933 32 H 0.018 0.982 33 H 0.343 0.657 34 H 0.081 0.919 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.044 0.956 38 H 0.066 0.934 39 H 0.393 0.607 40 H 0.132 0.868 41 H 0.143 0.857 42 H 0.140 0.860 43 H 0.132 0.868 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.278 2.684 -23.326 23.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.092 4.092 3 H 0.065 0.935 4 C -0.002 4.002 5 C -0.566 4.566 6 H 0.077 0.923 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.785 3.215 10 H -0.187 1.187 11 H -0.205 1.205 12 H -0.205 1.205 13 C -0.051 4.051 14 N -0.296 5.296 15 C 0.060 3.940 16 C -0.192 4.192 17 C -0.029 4.029 18 O -0.390 6.390 19 C -0.068 4.068 20 C -0.144 4.144 21 C -0.143 4.143 22 C -0.151 4.151 23 C -0.150 4.150 24 C -0.137 4.137 25 H 0.083 0.917 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.009 0.991 29 H 0.003 0.997 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.036 0.964 33 H 0.162 0.838 34 H 0.100 0.900 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.062 0.938 38 H 0.084 0.916 39 H 0.243 0.757 40 H 0.150 0.850 41 H 0.160 0.840 42 H 0.158 0.842 43 H 0.149 0.851 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.470 2.467 -23.231 23.407 hybrid contribution 1.597 0.176 1.401 2.131 sum 0.127 2.643 -21.830 21.990 Atomic orbital electron populations 1.21473 0.94706 1.00381 1.00332 1.20986 0.96636 0.98160 0.93379 0.93508 1.18981 0.93940 0.94656 0.92620 1.21669 1.34280 1.08496 0.92146 0.92289 1.25934 0.95279 0.96110 1.02580 1.70104 1.40363 1.22940 1.24185 0.85469 0.78080 0.78904 0.79037 1.18691 1.20471 1.20503 1.21890 0.96593 0.97515 0.89147 1.60739 1.62676 1.05804 1.00371 1.19899 0.90637 0.94726 0.88755 1.21847 1.01632 0.93123 1.02585 1.22939 0.94743 0.84893 1.00282 1.86407 1.26793 1.29598 1.96248 1.19670 0.98009 0.95380 0.93735 1.21111 1.00846 1.00693 0.91705 1.21371 0.98462 0.95282 0.99233 1.21426 0.98980 0.97179 0.97498 1.21400 1.00465 1.00254 0.92852 1.21174 0.98104 0.94923 0.99474 0.91656 0.94472 0.94526 0.99074 0.99737 0.92952 0.91415 0.96366 0.83779 0.90029 0.92411 0.91736 0.93828 0.91574 0.75727 0.84998 0.83950 0.84230 0.85052 0.86128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.39 8.89 71.98 0.64 -3.75 16 2 C -0.07 -3.07 2.48 -10.80 -0.03 -3.09 16 3 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 4 C 0.04 1.90 4.45 29.85 0.13 2.04 16 5 C -0.53 -30.40 8.41 25.60 0.22 -30.18 16 6 H 0.06 3.30 7.06 -2.91 -0.02 3.28 16 7 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 8 N -0.93 -57.62 13.29 21.45 0.28 -57.34 16 9 Si 0.96 45.11 29.54 68.60 2.03 47.14 16 10 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 C 0.08 2.72 4.29 86.30 0.37 3.09 16 14 N -0.66 -19.68 4.51 -473.87 -2.14 -21.82 16 15 C 0.15 3.73 0.61 2.78 0.00 3.74 16 16 C -0.13 -3.02 8.05 71.98 0.58 -2.44 16 17 C 0.05 1.16 5.29 71.98 0.38 1.54 16 18 O -0.58 -14.15 12.73 -148.98 -1.90 -16.05 16 19 C -0.07 -1.61 4.54 -19.86 -0.09 -1.70 16 20 C -0.13 -2.47 8.66 22.27 0.19 -2.28 16 21 C -0.13 -2.19 10.05 22.27 0.22 -1.97 16 22 C -0.13 -2.40 10.05 22.27 0.22 -2.17 16 23 C -0.13 -2.78 10.05 22.27 0.22 -2.56 16 24 C -0.12 -2.96 9.14 22.27 0.20 -2.75 16 25 H 0.06 2.26 7.75 -2.38 -0.02 2.24 16 26 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.04 1.53 6.95 -2.39 -0.02 1.52 16 28 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 29 H -0.02 -0.92 8.14 -2.39 -0.02 -0.93 16 30 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 31 H 0.07 2.38 6.30 -2.39 -0.02 2.37 16 32 H 0.02 0.67 6.42 -2.38 -0.02 0.65 16 33 H 0.34 10.71 6.95 -89.69 -0.62 10.09 16 34 H 0.08 1.41 7.39 -2.38 -0.02 1.39 16 35 H 0.06 1.38 6.40 -2.39 -0.02 1.37 16 36 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.04 1.07 6.68 -2.39 -0.02 1.06 16 38 H 0.07 1.21 7.23 -2.39 -0.02 1.19 16 39 H 0.39 6.35 9.12 -74.05 -0.68 5.68 16 40 H 0.13 2.07 7.07 -2.91 -0.02 2.05 16 41 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 42 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 43 H 0.13 2.29 8.06 -2.91 -0.02 2.27 16 44 H 0.12 3.22 6.40 -2.91 -0.02 3.20 16 Total: -1.00 -67.58 346.72 1.70 -65.88 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: -0.31 Total: 24.33 kcal Atomic # 6 Polarization: -45.87 SS G_CDS: 3.73 Total: -42.14 kcal Atomic # 7 Polarization: -77.30 SS G_CDS: -1.85 Total: -79.15 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -1.90 Total: -16.05 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -67.58 1.70 -65.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602544414.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.014 kcal (2) G-P(sol) polarization free energy of solvation -67.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds