Wall clock time and date at job start Mon Mar 30 2020 01:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00285 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99651 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47220 * 60.00221 * 9 7 5 11 11 H 1.48500 * 109.47168 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47296 * 300.00052 * 9 7 5 13 13 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 14 14 N 1.46892 * 109.47486 * 295.00155 * 13 2 1 15 15 C 1.46903 * 111.00235 * 180.02562 * 14 13 2 16 16 C 1.53006 * 109.47219 * 179.97438 * 15 14 13 17 17 C 1.52994 * 109.47074 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.46854 * 179.97438 * 17 16 15 19 19 C 1.38268 * 119.94577 * 269.72571 * 18 17 16 20 20 C 1.38143 * 120.05662 * 179.72605 * 19 18 17 21 21 C 1.38735 * 119.94261 * 0.57204 * 20 19 18 22 22 O 1.35900 * 120.05942 * 179.68288 * 21 20 19 23 23 C 1.38732 * 119.88626 * 359.70191 * 21 20 19 24 24 C 1.38141 * 119.94833 * 0.02562 * 23 21 20 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 29 29 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 30 30 H 0.96998 * 119.99928 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47325 * 55.00085 * 13 2 1 32 32 H 1.09008 * 109.47017 * 174.99994 * 13 2 1 33 33 H 1.00905 * 110.99804 * 303.95405 * 14 13 2 34 34 H 1.08991 * 109.46891 * 299.99685 * 15 14 13 35 35 H 1.09001 * 109.47244 * 59.99987 * 15 14 13 36 36 H 1.09001 * 109.46816 * 300.00451 * 16 15 14 37 37 H 1.09001 * 109.46992 * 59.99871 * 16 15 14 38 38 H 1.08991 * 109.47010 * 299.99707 * 17 16 15 39 39 H 1.09001 * 109.47270 * 60.00098 * 17 16 15 40 40 H 1.07997 * 119.97069 * 359.97438 * 19 18 17 41 41 H 1.08002 * 120.02907 * 180.25198 * 20 19 18 42 42 H 0.96696 * 114.00067 * 270.02584 * 22 21 20 43 43 H 1.08006 * 120.02540 * 179.97438 * 23 21 20 44 44 H 1.07994 * 119.97565 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 2.6774 -1.5183 -3.8510 9 14 1.4998 0.5633 -5.2495 10 1 2.0920 1.9237 -5.1865 11 1 1.9947 -0.1368 -6.4621 12 1 0.0199 0.6700 -5.3096 13 6 2.0399 -0.7212 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.1257 -0.6266 3.6672 16 6 1.7033 0.1915 4.8892 17 6 2.1967 -0.5003 6.1614 18 6 1.7812 0.3059 7.3650 19 6 2.6176 1.2899 7.8588 20 6 2.2366 2.0341 8.9585 21 6 1.0187 1.7853 9.5747 22 8 0.6443 2.5117 10.6606 23 6 0.1838 0.7936 9.0807 24 6 0.5670 0.0560 7.9773 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1264 -0.7995 -1.2055 29 1 1.6055 -1.7198 -1.2951 30 1 2.9246 -1.8413 -4.7316 31 1 1.6053 -1.7198 1.2952 32 1 3.1263 -0.7995 1.2056 33 1 1.9881 0.9873 2.3966 34 1 1.6920 -1.6245 3.7300 35 1 3.2126 -0.7037 3.6401 36 1 2.1373 1.1894 4.8260 37 1 0.6164 0.2691 4.9165 38 1 1.7623 -1.4979 6.2243 39 1 3.2836 -0.5783 6.1344 40 1 3.5679 1.4796 7.3820 41 1 2.8884 2.8054 9.3414 42 1 0.9248 2.1310 11.5041 43 1 -0.7646 0.5977 9.5589 44 1 -0.0824 -0.7164 7.5927 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602545617.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:33 Heat of formation + Delta-G solvation = -53.266600 kcal Electronic energy + Delta-G solvation = -20039.395801 eV Core-core repulsion = 16955.300740 eV Total energy + Delta-G solvation = -3084.095060 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.09913 -37.67648 -36.92757 -34.90686 -33.05375 -31.75529 -31.31331 -29.31178 -26.84157 -25.86465 -24.22322 -23.13341 -22.38517 -21.73790 -21.10433 -18.98998 -18.75548 -16.34011 -16.30213 -16.21860 -15.66031 -15.46895 -14.68284 -14.40513 -14.24477 -14.14754 -13.81487 -13.73358 -13.16005 -12.75945 -12.46161 -12.36690 -12.13416 -11.90839 -11.63630 -11.47256 -11.32284 -11.07857 -10.88173 -10.82332 -10.76783 -10.64649 -10.26919 -10.19935 -9.67121 -9.31205 -9.12462 -8.94823 -8.74308 -8.30775 -8.09019 -5.95674 -3.96754 0.89638 1.03070 3.28099 3.35896 3.40031 3.42764 3.87086 4.33129 4.49828 4.50486 4.61356 4.68311 4.88815 5.06031 5.16386 5.23040 5.29720 5.39925 5.44853 5.51515 5.63533 5.69054 5.71802 5.78142 5.89466 5.99624 6.07718 6.09821 6.17502 6.19483 6.35468 6.44473 6.50035 6.58359 6.71881 7.04398 7.21117 7.22776 7.28939 7.40318 7.67562 7.72393 7.87872 8.04618 8.48777 9.09416 9.66384 11.15808 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.045908 B = 0.002081 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.763223 B =13452.251972 C =13604.390842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.083 4.083 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.891 3.109 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.064 3.936 14 N -0.689 5.689 15 C 0.058 3.942 16 C -0.111 4.111 17 C -0.080 4.080 18 C -0.084 4.084 19 C -0.101 4.101 20 C -0.143 4.143 21 C 0.094 3.906 22 O -0.501 6.501 23 C -0.143 4.143 24 C -0.100 4.100 25 H 0.042 0.958 26 H 0.053 0.947 27 H 0.039 0.961 28 H 0.012 0.988 29 H 0.016 0.984 30 H 0.260 0.740 31 H 0.065 0.935 32 H 0.023 0.977 33 H 0.336 0.664 34 H 0.069 0.931 35 H 0.025 0.975 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.388 0.612 43 H 0.127 0.873 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.792 2.982 28.216 28.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.102 4.102 3 H 0.071 0.929 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.065 4.065 14 N -0.320 5.320 15 C -0.072 4.072 16 C -0.148 4.148 17 C -0.118 4.118 18 C -0.084 4.084 19 C -0.120 4.120 20 C -0.162 4.162 21 C 0.050 3.950 22 O -0.311 6.311 23 C -0.161 4.161 24 C -0.118 4.118 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.030 0.970 29 H 0.034 0.966 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.041 0.959 33 H 0.154 0.846 34 H 0.087 0.913 35 H 0.043 0.957 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.144 0.856 41 H 0.145 0.855 42 H 0.243 0.757 43 H 0.145 0.855 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.592 2.944 27.688 27.889 hybrid contribution 0.961 0.378 -0.565 1.177 sum -0.631 3.322 27.123 27.332 Atomic orbital electron populations 1.21586 0.95732 1.00546 1.00134 1.21205 0.96013 0.98903 0.94075 0.92871 1.19120 0.95883 0.95579 0.90453 1.21209 1.34618 1.08278 0.91007 0.92613 1.25029 0.95359 0.95129 0.99104 1.69956 1.39036 1.21266 1.23451 0.86680 0.78902 0.80083 0.82456 1.20325 1.21393 1.20270 1.22147 0.97094 0.97709 0.89512 1.60533 1.64067 1.05758 1.01613 1.21952 0.97052 0.98356 0.89828 1.21548 1.02132 0.98913 0.92251 1.20599 1.01417 0.98305 0.91515 1.19987 0.94536 0.97008 0.96840 1.20974 0.99821 0.95266 0.95898 1.21418 0.96047 1.00744 0.97966 1.18489 0.93114 0.92693 0.90715 1.84839 1.79997 1.50608 1.15649 1.21427 1.00408 0.95796 0.98507 1.20987 0.96060 0.99579 0.95188 0.93936 0.92801 0.94195 0.96959 0.96565 0.93066 0.91614 0.95852 0.84643 0.91259 0.95701 0.92026 0.90915 0.90705 0.90943 0.85573 0.85532 0.75653 0.85496 0.85445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.43 8.89 37.16 0.33 -2.10 16 2 C -0.08 -1.72 2.48 -90.62 -0.22 -1.95 16 3 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.52 8.41 -34.44 -0.29 -14.81 16 6 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 9 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.06 1.12 5.07 -3.83 -0.02 1.10 16 14 N -0.69 -10.04 5.96 -113.78 -0.68 -10.72 16 15 C 0.06 0.68 5.69 -3.82 -0.02 0.66 16 16 C -0.11 -1.09 5.46 -26.73 -0.15 -1.23 16 17 C -0.08 -0.66 5.34 -27.89 -0.15 -0.81 16 18 C -0.08 -0.73 5.13 -104.60 -0.54 -1.26 16 19 C -0.10 -0.86 9.69 -39.61 -0.38 -1.24 16 20 C -0.14 -1.21 9.99 -39.43 -0.39 -1.61 16 21 C 0.09 0.83 6.71 -39.22 -0.26 0.57 16 22 O -0.50 -3.93 13.50 -19.43 -0.26 -4.19 16 23 C -0.14 -1.21 9.99 -39.43 -0.39 -1.61 16 24 C -0.10 -0.85 9.69 -39.61 -0.38 -1.23 16 25 H 0.04 0.76 7.75 -51.93 -0.40 0.35 16 26 H 0.05 1.14 6.95 -51.93 -0.36 0.77 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 33 H 0.34 4.67 8.73 -39.29 -0.34 4.33 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 39 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 40 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 42 H 0.39 1.10 9.06 45.56 0.41 1.51 16 43 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 44 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 LS Contribution 363.73 15.07 5.48 5.48 Total: -1.00 -31.94 363.73 -9.80 -41.74 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -6.96 Total: 0.74 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: -3.10 Total: -23.47 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.06 Total: -37.17 kcal Atomic # 8 Polarization: -3.93 SS G_CDS: -0.26 Total: -4.19 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.94 -9.80 -41.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602545617.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.530 kcal (2) G-P(sol) polarization free energy of solvation -31.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds