Wall clock time and date at job start Mon Mar 30 2020 01:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00285 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99651 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47220 * 60.00221 * 9 7 5 11 11 H 1.48500 * 109.47168 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47296 * 300.00052 * 9 7 5 13 13 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 14 14 N 1.46892 * 109.47486 * 295.00155 * 13 2 1 15 15 C 1.46903 * 111.00235 * 180.02562 * 14 13 2 16 16 C 1.53006 * 109.47219 * 179.97438 * 15 14 13 17 17 C 1.52994 * 109.47074 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.46854 * 179.97438 * 17 16 15 19 19 C 1.38268 * 119.94577 * 269.72571 * 18 17 16 20 20 C 1.38143 * 120.05662 * 179.72605 * 19 18 17 21 21 C 1.38735 * 119.94261 * 0.57204 * 20 19 18 22 22 O 1.35900 * 120.05942 * 179.68288 * 21 20 19 23 23 C 1.38732 * 119.88626 * 359.70191 * 21 20 19 24 24 C 1.38141 * 119.94833 * 0.02562 * 23 21 20 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 29 29 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 30 30 H 0.96998 * 119.99928 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47325 * 55.00085 * 13 2 1 32 32 H 1.09008 * 109.47017 * 174.99994 * 13 2 1 33 33 H 1.00905 * 110.99804 * 303.95405 * 14 13 2 34 34 H 1.08991 * 109.46891 * 299.99685 * 15 14 13 35 35 H 1.09001 * 109.47244 * 59.99987 * 15 14 13 36 36 H 1.09001 * 109.46816 * 300.00451 * 16 15 14 37 37 H 1.09001 * 109.46992 * 59.99871 * 16 15 14 38 38 H 1.08991 * 109.47010 * 299.99707 * 17 16 15 39 39 H 1.09001 * 109.47270 * 60.00098 * 17 16 15 40 40 H 1.07997 * 119.97069 * 359.97438 * 19 18 17 41 41 H 1.08002 * 120.02907 * 180.25198 * 20 19 18 42 42 H 0.96696 * 114.00067 * 270.02584 * 22 21 20 43 43 H 1.08006 * 120.02540 * 179.97438 * 23 21 20 44 44 H 1.07994 * 119.97565 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 2.6774 -1.5183 -3.8510 9 14 1.4998 0.5633 -5.2495 10 1 2.0920 1.9237 -5.1865 11 1 1.9947 -0.1368 -6.4621 12 1 0.0199 0.6700 -5.3096 13 6 2.0399 -0.7212 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.1257 -0.6266 3.6672 16 6 1.7033 0.1915 4.8892 17 6 2.1967 -0.5003 6.1614 18 6 1.7812 0.3059 7.3650 19 6 2.6176 1.2899 7.8588 20 6 2.2366 2.0341 8.9585 21 6 1.0187 1.7853 9.5747 22 8 0.6443 2.5117 10.6606 23 6 0.1838 0.7936 9.0807 24 6 0.5670 0.0560 7.9773 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1264 -0.7995 -1.2055 29 1 1.6055 -1.7198 -1.2951 30 1 2.9246 -1.8413 -4.7316 31 1 1.6053 -1.7198 1.2952 32 1 3.1263 -0.7995 1.2056 33 1 1.9881 0.9873 2.3966 34 1 1.6920 -1.6245 3.7300 35 1 3.2126 -0.7037 3.6401 36 1 2.1373 1.1894 4.8260 37 1 0.6164 0.2691 4.9165 38 1 1.7623 -1.4979 6.2243 39 1 3.2836 -0.5783 6.1344 40 1 3.5679 1.4796 7.3820 41 1 2.8884 2.8054 9.3414 42 1 0.9248 2.1310 11.5041 43 1 -0.7646 0.5977 9.5589 44 1 -0.0824 -0.7164 7.5927 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602545617.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:33 Heat of formation + Delta-G solvation = -73.133799 kcal Electronic energy + Delta-G solvation = -20040.257307 eV Core-core repulsion = 16955.300740 eV Total energy + Delta-G solvation = -3084.956567 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.69651 -38.63633 -37.95600 -36.22997 -34.59656 -33.27472 -31.91042 -30.27350 -28.74257 -27.07504 -25.61071 -23.95853 -23.73473 -22.69957 -21.82742 -20.66062 -19.33150 -18.47341 -17.11637 -16.87925 -16.56990 -16.52306 -16.16947 -15.70809 -15.42566 -15.28453 -14.70065 -14.50809 -14.30628 -14.24359 -13.60139 -13.54962 -13.24645 -13.16332 -12.86921 -12.75280 -12.70960 -12.50677 -12.33181 -12.19370 -12.05267 -11.79449 -11.61556 -11.44159 -11.33296 -11.08494 -10.87626 -10.52461 -9.92414 -9.38023 -9.29354 -8.16867 -6.26065 0.28412 0.41865 1.40525 1.43413 1.51056 2.42539 2.68101 3.16199 3.27189 3.36193 3.86461 3.91138 4.08595 4.12284 4.18647 4.34839 4.44428 4.47439 4.49822 4.52265 4.57352 4.74981 4.84585 4.85631 4.91478 4.96394 5.03304 5.05677 5.09597 5.26351 5.29350 5.38485 5.40682 5.47200 5.48921 5.51418 5.57137 5.72317 5.81905 5.89417 5.94140 6.11992 6.32451 6.53513 6.86587 6.89686 7.41976 8.94898 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.045908 B = 0.002081 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.763223 B =13452.251972 C =13604.390842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.075 4.075 3 H 0.053 0.947 4 C 0.032 3.968 5 C -0.530 4.530 6 H 0.061 0.939 7 C -0.004 4.004 8 N -0.935 5.935 9 Si 0.962 3.038 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.077 3.923 14 N -0.689 5.689 15 C 0.058 3.942 16 C -0.100 4.100 17 C -0.074 4.074 18 C -0.095 4.095 19 C -0.107 4.107 20 C -0.154 4.154 21 C 0.086 3.914 22 O -0.514 6.514 23 C -0.154 4.154 24 C -0.107 4.107 25 H 0.066 0.934 26 H 0.037 0.963 27 H 0.034 0.966 28 H -0.014 1.014 29 H -0.010 1.010 30 H 0.262 0.738 31 H 0.061 0.939 32 H 0.018 0.982 33 H 0.342 0.658 34 H 0.069 0.931 35 H 0.030 0.970 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.408 0.592 43 H 0.137 0.863 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.264 3.971 29.098 29.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.094 4.094 3 H 0.072 0.928 4 C -0.006 4.006 5 C -0.568 4.568 6 H 0.079 0.921 7 C -0.201 4.201 8 N -0.576 5.576 9 Si 0.787 3.213 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.193 1.193 13 C -0.052 4.052 14 N -0.320 5.320 15 C -0.071 4.071 16 C -0.138 4.138 17 C -0.111 4.111 18 C -0.095 4.095 19 C -0.125 4.125 20 C -0.173 4.173 21 C 0.042 3.958 22 O -0.327 6.327 23 C -0.173 4.173 24 C -0.125 4.125 25 H 0.085 0.915 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.004 0.996 29 H 0.008 0.992 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.036 0.964 33 H 0.160 0.840 34 H 0.088 0.912 35 H 0.048 0.952 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.156 0.844 41 H 0.155 0.845 42 H 0.267 0.733 43 H 0.155 0.845 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.066 3.940 28.607 28.951 hybrid contribution 1.118 0.063 -0.752 1.349 sum -0.948 4.003 27.854 28.156 Atomic orbital electron populations 1.21485 0.94737 1.00347 1.00472 1.21028 0.96703 0.98432 0.93271 0.92827 1.19017 0.94094 0.94702 0.92757 1.21620 1.34482 1.08608 0.92104 0.92105 1.25973 0.95290 0.96156 1.02697 1.70094 1.40203 1.22952 1.24323 0.85547 0.78913 0.78761 0.78111 1.19233 1.21015 1.19272 1.21838 0.96493 0.97343 0.89517 1.60471 1.64253 1.05937 1.01363 1.22014 0.97346 0.98501 0.89191 1.21425 1.01564 0.98709 0.92054 1.20530 1.01910 0.98314 0.90386 1.20086 0.94813 0.97376 0.97190 1.21184 1.00344 0.95093 0.95910 1.21615 0.96313 1.01192 0.98143 1.18660 0.93302 0.92707 0.91122 1.84778 1.80236 1.51051 1.16597 1.21619 1.00949 0.95944 0.98742 1.21191 0.96255 0.99841 0.95198 0.91490 0.94404 0.94654 0.99558 0.99182 0.92949 0.92076 0.96426 0.84017 0.91229 0.95191 0.92021 0.91707 0.90031 0.90136 0.84358 0.84466 0.73304 0.84475 0.84379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.39 8.89 71.98 0.64 -3.75 16 2 C -0.08 -3.12 2.48 -10.79 -0.03 -3.14 16 3 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 4 C 0.03 1.70 4.45 29.85 0.13 1.83 16 5 C -0.53 -30.30 8.41 25.60 0.22 -30.08 16 6 H 0.06 3.34 7.06 -2.91 -0.02 3.32 16 7 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 8 N -0.93 -57.59 13.29 21.45 0.28 -57.31 16 9 Si 0.96 44.83 29.54 68.60 2.03 46.86 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 13 C 0.08 2.66 5.07 86.30 0.44 3.10 16 14 N -0.69 -18.96 5.96 -513.89 -3.06 -22.02 16 15 C 0.06 1.27 5.69 86.30 0.49 1.76 16 16 C -0.10 -1.77 5.46 30.59 0.17 -1.60 16 17 C -0.07 -1.06 5.34 29.85 0.16 -0.90 16 18 C -0.09 -1.50 5.13 -19.85 -0.10 -1.60 16 19 C -0.11 -1.65 9.69 22.25 0.22 -1.43 16 20 C -0.15 -2.42 9.99 22.37 0.22 -2.20 16 21 C 0.09 1.43 6.71 22.51 0.15 1.58 16 22 O -0.51 -7.42 13.50 -92.43 -1.25 -8.67 16 23 C -0.15 -2.44 9.99 22.36 0.22 -2.22 16 24 C -0.11 -1.67 9.69 22.25 0.22 -1.45 16 25 H 0.07 2.26 7.75 -2.39 -0.02 2.24 16 26 H 0.04 1.56 6.95 -2.39 -0.02 1.54 16 27 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 28 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 29 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 30 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 31 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.02 0.62 8.14 -2.38 -0.02 0.60 16 33 H 0.34 8.87 8.73 -89.69 -0.78 8.09 16 34 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.08 1.07 8.08 -2.39 -0.02 1.05 16 39 H 0.08 1.04 8.08 -2.39 -0.02 1.02 16 40 H 0.14 1.69 8.06 -2.91 -0.02 1.66 16 41 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 42 H 0.41 1.78 9.06 -74.06 -0.67 1.11 16 43 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 44 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -68.01 363.73 1.12 -66.89 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -0.49 Total: 14.14 kcal Atomic # 6 Polarization: -43.48 SS G_CDS: 3.61 Total: -39.88 kcal Atomic # 7 Polarization: -76.56 SS G_CDS: -2.78 Total: -79.33 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -1.25 Total: -8.67 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -68.01 1.12 -66.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602545617.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.249 kcal (2) G-P(sol) polarization free energy of solvation -68.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds