Wall clock time and date at job start Mon Mar 30 2020 01:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.53002 * 109.46687 * 119.99877 * 2 1 3 5 5 C 1.50706 * 109.47153 * 294.99260 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.53005 * 109.47080 * 239.99305 * 2 1 3 14 14 N 1.46897 * 109.46940 * 65.00472 * 13 2 1 15 15 C 1.46900 * 110.99727 * 179.97438 * 14 13 2 16 16 C 1.53000 * 109.47059 * 179.97438 * 15 14 13 17 17 C 1.53000 * 109.47439 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.47118 * 179.97438 * 17 16 15 19 19 C 1.38267 * 119.94275 * 269.72476 * 18 17 16 20 20 C 1.38149 * 120.05328 * 179.72868 * 19 18 17 21 21 C 1.38731 * 119.94392 * 0.57001 * 20 19 18 22 22 O 1.35892 * 120.05825 * 179.68665 * 21 20 19 23 23 C 1.38744 * 119.88680 * 359.70202 * 21 20 19 24 24 C 1.38143 * 119.94329 * 0.02562 * 23 21 20 25 25 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 27 27 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 28 28 H 1.09004 * 109.47178 * 175.00050 * 4 2 1 29 29 H 1.08993 * 109.47411 * 54.99732 * 4 2 1 30 30 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 31 31 H 1.08997 * 109.46867 * 185.00573 * 13 2 1 32 32 H 1.09001 * 109.46919 * 305.00269 * 13 2 1 33 33 H 1.00902 * 111.00152 * 56.04664 * 14 13 2 34 34 H 1.08995 * 109.47492 * 299.99990 * 15 14 13 35 35 H 1.09003 * 109.47169 * 60.00204 * 15 14 13 36 36 H 1.09008 * 109.47237 * 300.00217 * 16 15 14 37 37 H 1.08999 * 109.47484 * 59.99634 * 16 15 14 38 38 H 1.08993 * 109.46624 * 300.00000 * 17 16 15 39 39 H 1.08999 * 109.46678 * 60.00026 * 17 16 15 40 40 H 1.08001 * 119.97538 * 359.97438 * 19 18 17 41 41 H 1.07995 * 120.02934 * 180.25032 * 20 19 18 42 42 H 0.96702 * 113.99766 * 270.01961 * 22 21 20 43 43 H 1.07994 * 120.02409 * 179.97438 * 23 21 20 44 44 H 1.08001 * 119.96849 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9744 2.3756 7 6 1.9931 -0.4014 3.7283 8 7 2.6720 -1.5211 3.8516 9 14 1.4984 0.5631 5.2497 10 1 2.5663 1.5388 5.5860 11 1 0.2303 1.2889 4.9849 12 1 1.3056 -0.3715 6.3874 13 6 2.0400 -0.7214 -1.2492 14 7 1.6515 0.0372 -2.4456 15 6 2.1259 -0.6269 -3.6670 16 6 1.7025 0.1904 -4.8892 17 6 2.1961 -0.5015 -6.1614 18 6 1.7785 0.3032 -7.3652 19 6 0.5665 0.0477 -7.9796 20 6 0.1789 0.7879 -9.0798 21 6 1.0122 1.7802 -9.5754 22 8 0.6361 2.5053 -10.6614 23 6 2.2305 2.0307 -8.9604 24 6 2.6108 1.2916 -7.8571 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.1263 -0.7995 1.2057 29 1 1.6053 -1.7197 1.2953 30 1 2.9286 -2.0221 3.0617 31 1 3.1263 -0.7997 -1.2054 32 1 1.6053 -1.7200 -1.2950 33 1 1.9883 0.9871 -2.3967 34 1 3.2127 -0.7042 -3.6399 35 1 1.6921 -1.6250 -3.7299 36 1 0.6155 0.2673 -4.9162 37 1 2.1358 1.1886 -4.8266 38 1 3.2829 -0.5787 -6.1347 39 1 1.7623 -1.4995 -6.2238 40 1 -0.0796 -0.7284 -7.5967 41 1 -0.7697 0.5907 -9.5569 42 1 0.9159 2.1241 -11.5049 43 1 2.8811 2.8024 -9.3446 44 1 3.5592 1.4861 -7.3784 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602545618.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:36 Heat of formation + Delta-G solvation = -57.226593 kcal Electronic energy + Delta-G solvation = -20073.688179 eV Core-core repulsion = 16989.421401 eV Total energy + Delta-G solvation = -3084.266778 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.12230 -37.71858 -37.01264 -35.04360 -33.22930 -31.78375 -31.33608 -29.31318 -26.47839 -25.93505 -24.16412 -23.15703 -22.43406 -21.80815 -21.14910 -19.25559 -18.77578 -16.68253 -16.36830 -16.24730 -15.71016 -15.51327 -14.58910 -14.46993 -14.23452 -14.03061 -13.76556 -13.68854 -13.31984 -12.89699 -12.74897 -12.40821 -12.02927 -11.86595 -11.68297 -11.64778 -11.32957 -11.13064 -10.96652 -10.87531 -10.75913 -10.62586 -10.17750 -10.07295 -9.79631 -9.42780 -9.33462 -8.78187 -8.44385 -8.27512 -8.17063 -6.30578 -3.98416 0.87283 1.00775 3.25717 3.46009 3.49982 3.65591 3.85024 4.27975 4.47909 4.55535 4.59968 4.65447 4.85103 5.03510 5.12387 5.19135 5.25114 5.40551 5.45513 5.48007 5.59222 5.64172 5.66573 5.70965 5.79712 5.97045 6.02231 6.07123 6.07602 6.13594 6.32443 6.34186 6.46331 6.48079 6.61465 6.91375 7.08648 7.14414 7.27003 7.30298 7.43666 7.57881 7.64918 8.29449 8.53032 8.94866 9.73011 11.09872 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.045779 B = 0.002087 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.485431 B =13414.588206 C =13569.120779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.076 4.076 3 H 0.054 0.946 4 C 0.013 3.987 5 C -0.593 4.593 6 H 0.050 0.950 7 C 0.011 3.989 8 N -0.917 5.917 9 Si 1.070 2.930 10 H -0.289 1.289 11 H -0.289 1.289 12 H -0.285 1.285 13 C 0.063 3.937 14 N -0.689 5.689 15 C 0.058 3.942 16 C -0.111 4.111 17 C -0.080 4.080 18 C -0.084 4.084 19 C -0.100 4.100 20 C -0.143 4.143 21 C 0.094 3.906 22 O -0.501 6.501 23 C -0.143 4.143 24 C -0.101 4.101 25 H 0.038 0.962 26 H 0.054 0.946 27 H 0.043 0.957 28 H 0.003 0.997 29 H 0.007 0.993 30 H 0.268 0.732 31 H 0.022 0.978 32 H 0.065 0.935 33 H 0.337 0.663 34 H 0.025 0.975 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.388 0.612 43 H 0.127 0.873 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.073 3.394 -28.578 28.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.095 4.095 3 H 0.073 0.927 4 C -0.024 4.024 5 C -0.631 4.631 6 H 0.068 0.932 7 C -0.192 4.192 8 N -0.553 5.553 9 Si 0.899 3.101 10 H -0.216 1.216 11 H -0.215 1.215 12 H -0.211 1.211 13 C -0.065 4.065 14 N -0.319 5.319 15 C -0.072 4.072 16 C -0.148 4.148 17 C -0.118 4.118 18 C -0.084 4.084 19 C -0.118 4.118 20 C -0.161 4.161 21 C 0.050 3.950 22 O -0.311 6.311 23 C -0.162 4.162 24 C -0.120 4.120 25 H 0.057 0.943 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.021 0.979 29 H 0.025 0.975 30 H 0.078 0.922 31 H 0.041 0.959 32 H 0.083 0.917 33 H 0.154 0.846 34 H 0.043 0.957 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.244 0.756 43 H 0.145 0.855 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.874 3.485 -26.530 26.824 hybrid contribution 1.115 -0.087 -2.067 2.350 sum -0.759 3.398 -28.598 28.809 Atomic orbital electron populations 1.21577 0.95497 1.00534 1.00326 1.21066 0.96173 0.98828 0.93436 0.92718 1.19258 0.95099 0.95645 0.92398 1.22065 1.38532 1.10271 0.92258 0.93157 1.25838 0.94789 0.97163 1.01410 1.70750 1.36407 1.14706 1.33481 0.83524 0.75970 0.75222 0.75373 1.21581 1.21490 1.21082 1.22154 0.97001 0.97724 0.89656 1.60516 1.64067 1.05762 1.01552 1.21956 0.97049 0.98376 0.89807 1.21547 1.02161 0.98915 0.92220 1.20595 1.01401 0.98318 0.91506 1.19976 0.94607 0.96986 0.96841 1.20989 0.96037 0.99557 0.95233 1.21428 1.00408 0.95755 0.98534 1.18490 0.93068 0.92702 0.90712 1.84839 1.79955 1.50649 1.15637 1.21423 0.96054 1.00782 0.97910 1.20970 0.99835 0.95282 0.95866 0.94279 0.92647 0.93769 0.97907 0.97478 0.92187 0.95946 0.91654 0.84574 0.95682 0.91255 0.90884 0.91998 0.90940 0.90712 0.85453 0.85478 0.75632 0.85514 0.85581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.45 8.89 37.16 0.33 -2.12 16 2 C -0.08 -1.59 2.48 -90.62 -0.22 -1.82 16 3 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 4 C 0.01 0.35 3.76 -27.88 -0.10 0.24 16 5 C -0.59 -17.02 8.41 -34.44 -0.29 -17.31 16 6 H 0.05 1.43 7.06 -52.49 -0.37 1.06 16 7 C 0.01 0.33 5.46 -17.82 -0.10 0.23 16 8 N -0.92 -28.53 13.65 55.43 0.76 -27.78 16 9 Si 1.07 25.79 29.90 -169.99 -5.08 20.71 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 C 0.06 1.11 5.07 -3.82 -0.02 1.09 16 14 N -0.69 -10.03 5.96 -113.78 -0.68 -10.71 16 15 C 0.06 0.68 5.68 -3.82 -0.02 0.66 16 16 C -0.11 -1.08 5.46 -26.73 -0.15 -1.23 16 17 C -0.08 -0.65 5.34 -27.88 -0.15 -0.80 16 18 C -0.08 -0.73 5.13 -104.60 -0.54 -1.26 16 19 C -0.10 -0.85 9.69 -39.60 -0.38 -1.23 16 20 C -0.14 -1.21 9.99 -39.43 -0.39 -1.60 16 21 C 0.09 0.83 6.71 -39.21 -0.26 0.57 16 22 O -0.50 -3.90 13.50 -19.40 -0.26 -4.16 16 23 C -0.14 -1.21 9.99 -39.43 -0.39 -1.60 16 24 C -0.10 -0.85 9.69 -39.61 -0.38 -1.23 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.05 1.20 6.95 -51.93 -0.36 0.83 16 27 H 0.04 0.79 7.75 -51.93 -0.40 0.39 16 28 H 0.00 0.07 8.01 -51.93 -0.42 -0.34 16 29 H 0.01 0.19 8.00 -51.93 -0.42 -0.23 16 30 H 0.27 8.31 7.22 -40.82 -0.29 8.01 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.34 4.69 8.73 -39.29 -0.34 4.35 16 34 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 39 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 40 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 42 H 0.39 1.08 9.06 45.56 0.41 1.49 16 43 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 44 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 LS Contribution 362.41 15.07 5.46 5.46 Total: -1.00 -32.76 362.41 -9.78 -42.54 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -6.90 Total: 1.36 kcal Atomic # 6 Polarization: -24.35 SS G_CDS: -3.08 Total: -27.43 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.08 Total: -38.49 kcal Atomic # 8 Polarization: -3.90 SS G_CDS: -0.26 Total: -4.16 kcal Atomic # 14 Polarization: 25.79 SS G_CDS: -5.08 Total: 20.71 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.76 -9.78 -42.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602545618.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.688 kcal (2) G-P(sol) polarization free energy of solvation -32.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds