Wall clock time and date at job start Mon Mar 30 2020 01:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.53002 * 109.46687 * 119.99877 * 2 1 3 5 5 C 1.50706 * 109.47153 * 294.99260 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.53005 * 109.47080 * 239.99305 * 2 1 3 14 14 N 1.46897 * 109.46940 * 65.00472 * 13 2 1 15 15 C 1.46900 * 110.99727 * 179.97438 * 14 13 2 16 16 C 1.53000 * 109.47059 * 179.97438 * 15 14 13 17 17 C 1.53000 * 109.47439 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.47118 * 179.97438 * 17 16 15 19 19 C 1.38267 * 119.94275 * 269.72476 * 18 17 16 20 20 C 1.38149 * 120.05328 * 179.72868 * 19 18 17 21 21 C 1.38731 * 119.94392 * 0.57001 * 20 19 18 22 22 O 1.35892 * 120.05825 * 179.68665 * 21 20 19 23 23 C 1.38744 * 119.88680 * 359.70202 * 21 20 19 24 24 C 1.38143 * 119.94329 * 0.02562 * 23 21 20 25 25 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 27 27 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 28 28 H 1.09004 * 109.47178 * 175.00050 * 4 2 1 29 29 H 1.08993 * 109.47411 * 54.99732 * 4 2 1 30 30 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 31 31 H 1.08997 * 109.46867 * 185.00573 * 13 2 1 32 32 H 1.09001 * 109.46919 * 305.00269 * 13 2 1 33 33 H 1.00902 * 111.00152 * 56.04664 * 14 13 2 34 34 H 1.08995 * 109.47492 * 299.99990 * 15 14 13 35 35 H 1.09003 * 109.47169 * 60.00204 * 15 14 13 36 36 H 1.09008 * 109.47237 * 300.00217 * 16 15 14 37 37 H 1.08999 * 109.47484 * 59.99634 * 16 15 14 38 38 H 1.08993 * 109.46624 * 300.00000 * 17 16 15 39 39 H 1.08999 * 109.46678 * 60.00026 * 17 16 15 40 40 H 1.08001 * 119.97538 * 359.97438 * 19 18 17 41 41 H 1.07995 * 120.02934 * 180.25032 * 20 19 18 42 42 H 0.96702 * 113.99766 * 270.01961 * 22 21 20 43 43 H 1.07994 * 120.02409 * 179.97438 * 23 21 20 44 44 H 1.08001 * 119.96849 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9744 2.3756 7 6 1.9931 -0.4014 3.7283 8 7 2.6720 -1.5211 3.8516 9 14 1.4984 0.5631 5.2497 10 1 2.5663 1.5388 5.5860 11 1 0.2303 1.2889 4.9849 12 1 1.3056 -0.3715 6.3874 13 6 2.0400 -0.7214 -1.2492 14 7 1.6515 0.0372 -2.4456 15 6 2.1259 -0.6269 -3.6670 16 6 1.7025 0.1904 -4.8892 17 6 2.1961 -0.5015 -6.1614 18 6 1.7785 0.3032 -7.3652 19 6 0.5665 0.0477 -7.9796 20 6 0.1789 0.7879 -9.0798 21 6 1.0122 1.7802 -9.5754 22 8 0.6361 2.5053 -10.6614 23 6 2.2305 2.0307 -8.9604 24 6 2.6108 1.2916 -7.8571 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.1263 -0.7995 1.2057 29 1 1.6053 -1.7197 1.2953 30 1 2.9286 -2.0221 3.0617 31 1 3.1263 -0.7997 -1.2054 32 1 1.6053 -1.7200 -1.2950 33 1 1.9883 0.9871 -2.3967 34 1 3.2127 -0.7042 -3.6399 35 1 1.6921 -1.6250 -3.7299 36 1 0.6155 0.2673 -4.9162 37 1 2.1358 1.1886 -4.8266 38 1 3.2829 -0.5787 -6.1347 39 1 1.7623 -1.4995 -6.2238 40 1 -0.0796 -0.7284 -7.5967 41 1 -0.7697 0.5907 -9.5569 42 1 0.9159 2.1241 -11.5049 43 1 2.8811 2.8024 -9.3446 44 1 3.5592 1.4861 -7.3784 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602545618.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:35 Heat of formation + Delta-G solvation = -77.824389 kcal Electronic energy + Delta-G solvation = -20074.581366 eV Core-core repulsion = 16989.421401 eV Total energy + Delta-G solvation = -3085.159966 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.71613 -38.73780 -38.01349 -36.41981 -34.75079 -33.26720 -31.92952 -30.24557 -28.42066 -27.13794 -25.58940 -24.09859 -23.75486 -22.74899 -21.87812 -20.91563 -19.34817 -18.85716 -17.16953 -16.89175 -16.58310 -16.23798 -15.94493 -15.84264 -15.55985 -15.36587 -14.97136 -14.67111 -14.34583 -14.08594 -13.82558 -13.48667 -13.38186 -13.14825 -12.94966 -12.85661 -12.67117 -12.48377 -12.34707 -12.07036 -11.94181 -11.74416 -11.64738 -11.52706 -11.35472 -11.30631 -10.56203 -10.52121 -9.94312 -9.40196 -9.36849 -8.65793 -6.34681 0.26427 0.39928 1.52160 1.61610 1.79157 2.57426 2.65978 3.18207 3.20396 3.33659 3.82568 3.88701 4.01637 4.07816 4.12194 4.24080 4.38076 4.40442 4.45632 4.47828 4.50543 4.71068 4.76299 4.80139 4.80862 4.87721 4.89357 5.02594 5.06702 5.07709 5.22842 5.31244 5.34443 5.36957 5.37771 5.47102 5.48284 5.64135 5.69954 5.91967 6.00195 6.11843 6.22284 6.45911 6.62238 6.85103 7.46097 8.74847 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.045779 B = 0.002087 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.485431 B =13414.588206 C =13569.120779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.070 4.070 3 H 0.052 0.948 4 C 0.015 3.985 5 C -0.605 4.605 6 H 0.052 0.948 7 C -0.045 4.045 8 N -0.942 5.942 9 Si 1.119 2.881 10 H -0.273 1.273 11 H -0.269 1.269 12 H -0.284 1.284 13 C 0.077 3.923 14 N -0.689 5.689 15 C 0.059 3.941 16 C -0.100 4.100 17 C -0.073 4.073 18 C -0.095 4.095 19 C -0.107 4.107 20 C -0.154 4.154 21 C 0.087 3.913 22 O -0.513 6.513 23 C -0.154 4.154 24 C -0.107 4.107 25 H 0.034 0.966 26 H 0.036 0.964 27 H 0.068 0.932 28 H -0.017 1.017 29 H -0.013 1.013 30 H 0.254 0.746 31 H 0.018 0.982 32 H 0.062 0.938 33 H 0.342 0.658 34 H 0.030 0.970 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.408 0.592 43 H 0.138 0.862 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.513 4.369 -29.605 29.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 H 0.071 0.929 4 C -0.022 4.022 5 C -0.643 4.643 6 H 0.070 0.930 7 C -0.241 4.241 8 N -0.580 5.580 9 Si 0.940 3.060 10 H -0.198 1.198 11 H -0.194 1.194 12 H -0.210 1.210 13 C -0.052 4.052 14 N -0.320 5.320 15 C -0.070 4.070 16 C -0.138 4.138 17 C -0.111 4.111 18 C -0.095 4.095 19 C -0.125 4.125 20 C -0.172 4.172 21 C 0.043 3.957 22 O -0.327 6.327 23 C -0.173 4.173 24 C -0.125 4.125 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.087 0.913 28 H 0.001 0.999 29 H 0.005 0.995 30 H 0.063 0.937 31 H 0.036 0.964 32 H 0.080 0.920 33 H 0.160 0.840 34 H 0.049 0.951 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.156 0.844 41 H 0.155 0.845 42 H 0.267 0.733 43 H 0.155 0.845 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.310 4.461 -27.611 28.064 hybrid contribution 1.254 -0.388 -1.854 2.272 sum -1.056 4.073 -29.464 29.763 Atomic orbital electron populations 1.21477 0.94589 1.00357 1.00558 1.20918 0.96802 0.98298 0.92842 0.92915 1.19201 0.93736 0.94933 0.94356 1.22462 1.37976 1.10399 0.93420 0.92975 1.27428 0.94130 0.97313 1.05261 1.70890 1.38297 1.15973 1.32807 0.82909 0.76925 0.74373 0.71746 1.19844 1.19382 1.20952 1.21840 0.96472 0.97366 0.89529 1.60461 1.64268 1.05936 1.01326 1.22020 0.97367 0.98524 0.89129 1.21426 1.01582 0.98714 0.92041 1.20527 1.01898 0.98329 0.90364 1.20077 0.94883 0.97354 0.97197 1.21193 0.96229 0.99822 0.95238 1.21621 1.00950 0.95904 0.98773 1.18661 0.93255 0.92714 0.91118 1.84778 1.80193 1.51094 1.16586 1.21620 0.96320 1.01231 0.98090 1.21181 1.00354 0.95115 0.95883 0.94643 0.94533 0.91262 0.99901 0.99501 0.93673 0.96401 0.91986 0.83985 0.95136 0.91184 0.91694 0.92010 0.90124 0.90026 0.84381 0.84457 0.73282 0.84452 0.84373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.41 8.89 71.98 0.64 -3.77 16 2 C -0.07 -2.89 2.48 -10.79 -0.03 -2.92 16 3 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 4 C 0.02 0.81 3.76 29.85 0.11 0.92 16 5 C -0.60 -34.96 8.41 25.60 0.22 -34.75 16 6 H 0.05 2.94 7.06 -2.91 -0.02 2.92 16 7 C -0.04 -2.64 5.46 84.65 0.46 -2.18 16 8 N -0.94 -59.60 13.65 21.45 0.29 -59.31 16 9 Si 1.12 51.32 29.90 68.60 2.05 53.37 16 10 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 13 C 0.08 2.64 5.07 86.31 0.44 3.08 16 14 N -0.69 -18.86 5.96 -513.89 -3.06 -21.92 16 15 C 0.06 1.26 5.68 86.30 0.49 1.75 16 16 C -0.10 -1.75 5.46 30.59 0.17 -1.59 16 17 C -0.07 -1.04 5.34 29.85 0.16 -0.88 16 18 C -0.09 -1.49 5.13 -19.85 -0.10 -1.59 16 19 C -0.11 -1.66 9.69 22.26 0.22 -1.44 16 20 C -0.15 -2.43 9.99 22.37 0.22 -2.20 16 21 C 0.09 1.42 6.71 22.51 0.15 1.58 16 22 O -0.51 -7.36 13.50 -92.34 -1.25 -8.61 16 23 C -0.15 -2.41 9.99 22.37 0.22 -2.18 16 24 C -0.11 -1.64 9.69 22.25 0.22 -1.42 16 25 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.04 1.54 6.95 -2.39 -0.02 1.52 16 27 H 0.07 2.36 7.75 -2.39 -0.02 2.34 16 28 H -0.02 -0.97 8.01 -2.39 -0.02 -0.99 16 29 H -0.01 -0.75 8.00 -2.39 -0.02 -0.77 16 30 H 0.25 16.29 7.22 -92.71 -0.67 15.62 16 31 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.34 8.87 8.73 -89.69 -0.78 8.08 16 34 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.08 1.02 8.08 -2.39 -0.02 1.01 16 39 H 0.08 1.05 8.08 -2.39 -0.02 1.04 16 40 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 41 H 0.14 1.76 8.06 -2.91 -0.02 1.73 16 42 H 0.41 1.73 9.06 -74.06 -0.67 1.06 16 43 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 44 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -69.85 362.41 1.24 -68.62 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -0.39 Total: 15.46 kcal Atomic # 6 Polarization: -51.19 SS G_CDS: 3.58 Total: -47.61 kcal Atomic # 7 Polarization: -78.46 SS G_CDS: -2.77 Total: -81.22 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -1.25 Total: -8.61 kcal Atomic # 14 Polarization: 51.32 SS G_CDS: 2.05 Total: 53.37 kcal Total: -69.85 1.24 -68.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602545618.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.208 kcal (2) G-P(sol) polarization free energy of solvation -69.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds