Wall clock time and date at job start Mon Mar 30 2020 01:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47204 * 2 1 4 4 C 1.53001 * 109.46813 * 119.99629 * 2 1 3 5 5 C 1.50708 * 109.47240 * 294.99718 * 4 2 1 6 6 H 1.07996 * 119.99451 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00088 * 180.02562 * 5 4 2 8 8 N 1.31518 * 120.00010 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99897 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46904 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47396 * 119.99788 * 9 7 5 12 12 H 1.48504 * 109.46816 * 239.99761 * 9 7 5 13 13 C 1.52994 * 109.47235 * 239.99165 * 2 1 3 14 14 N 1.46901 * 109.47080 * 65.00386 * 13 2 1 15 15 C 1.46902 * 111.00420 * 179.97438 * 14 13 2 16 16 H 1.09002 * 109.47144 * 325.00237 * 15 14 13 17 17 C 1.53007 * 109.46739 * 84.99710 * 15 14 13 18 18 O 1.42894 * 109.47131 * 65.00487 * 17 15 14 19 19 C 1.52997 * 109.47314 * 204.99907 * 15 14 13 20 20 C 1.50693 * 109.47229 * 65.00117 * 19 15 14 21 21 C 1.38233 * 120.00207 * 89.99423 * 20 19 15 22 22 C 1.38234 * 120.00037 * 179.72405 * 21 20 19 23 23 C 1.38234 * 120.00240 * 0.26327 * 22 21 20 24 24 C 1.38238 * 119.99693 * 359.97438 * 23 22 21 25 25 C 1.38234 * 120.00067 * 0.02562 * 24 23 22 26 26 H 1.09000 * 109.46909 * 60.00573 * 1 2 3 27 27 H 1.09004 * 109.47049 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47193 * 300.00149 * 1 2 3 29 29 H 1.08997 * 109.47805 * 55.00091 * 4 2 1 30 30 H 1.09003 * 109.47204 * 175.00367 * 4 2 1 31 31 H 0.96999 * 119.99405 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.47634 * 305.00619 * 13 2 1 33 33 H 1.09006 * 109.47215 * 184.99958 * 13 2 1 34 34 H 1.00900 * 110.99934 * 56.03848 * 14 13 2 35 35 H 1.09001 * 109.46728 * 185.00413 * 17 15 14 36 36 H 1.08996 * 109.47474 * 304.99992 * 17 15 14 37 37 H 0.96701 * 114.00003 * 179.97438 * 18 17 15 38 38 H 1.09000 * 109.47015 * 305.00147 * 19 15 14 39 39 H 1.09001 * 109.46743 * 184.99900 * 19 15 14 40 40 H 1.08002 * 120.00157 * 0.02562 * 21 20 19 41 41 H 1.07999 * 120.00009 * 180.28389 * 22 21 20 42 42 H 1.07997 * 120.00460 * 180.02562 * 23 22 21 43 43 H 1.08001 * 119.99624 * 180.02562 * 24 23 22 44 44 H 1.07999 * 120.00008 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0573 2.4767 6 1 1.0800 0.9743 2.3756 7 6 1.9931 -0.4014 3.7284 8 7 2.6771 -1.5180 3.8513 9 14 1.4983 0.5631 5.2497 10 1 0.7411 1.7742 4.8433 11 1 0.6449 -0.2865 6.1187 12 1 2.7162 0.9687 5.9964 13 6 2.0400 -0.7214 -1.2491 14 7 1.6515 0.0372 -2.4456 15 6 2.1258 -0.6269 -3.6671 16 1 3.0896 -1.0979 -3.4737 17 6 1.1140 -1.6922 -4.0941 18 8 -0.1154 -1.0622 -4.4595 19 6 2.2788 0.4079 -4.7836 20 6 3.3633 1.3874 -4.4155 21 6 4.6727 1.1388 -4.7821 22 6 5.6666 2.0402 -4.4494 23 6 5.3519 3.1875 -3.7454 24 6 4.0431 3.4336 -3.3746 25 6 3.0493 2.5323 -3.7073 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.6054 -1.7197 1.2954 30 1 3.1263 -0.7994 1.2058 31 1 2.9243 -1.8408 4.7320 32 1 1.6053 -1.7199 -1.2950 33 1 3.1264 -0.7996 -1.2054 34 1 1.9882 0.9871 -2.3966 35 1 1.5068 -2.2449 -4.9476 36 1 0.9384 -2.3791 -3.2663 37 1 -0.8045 -1.6789 -4.7421 38 1 1.3374 0.9411 -4.9163 39 1 2.5449 -0.0965 -5.7125 40 1 4.9186 0.2428 -5.3326 41 1 6.6890 1.8482 -4.7398 42 1 6.1283 3.8919 -3.4859 43 1 3.7972 4.3302 -2.8250 44 1 2.0267 2.7249 -3.4179 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602547047.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:31 Heat of formation + Delta-G solvation = -69.764152 kcal Electronic energy + Delta-G solvation = -21615.511257 eV Core-core repulsion = 18530.700810 eV Total energy + Delta-G solvation = -3084.810448 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.52530 -38.84684 -37.41794 -35.81172 -34.41344 -32.72433 -31.77658 -30.23536 -28.65389 -26.93289 -26.55467 -24.42038 -23.45723 -22.41803 -21.28196 -20.61810 -18.54502 -18.30625 -17.56342 -16.93642 -16.55240 -16.21275 -16.15600 -15.68552 -15.50374 -14.85016 -14.73206 -14.40906 -14.31912 -14.13717 -13.74197 -13.66866 -13.36355 -13.12853 -12.88820 -12.78185 -12.70856 -12.48544 -12.24094 -12.11240 -11.93867 -11.80478 -11.51938 -11.51613 -11.10075 -10.90808 -10.73205 -10.54432 -9.82588 -9.58207 -9.25245 -8.17977 -6.27032 0.44767 0.50159 1.39437 1.39741 1.53142 2.41773 2.87065 3.15437 3.22892 3.56196 3.78699 3.99383 4.06567 4.16076 4.22294 4.26833 4.31062 4.46205 4.47592 4.51878 4.59341 4.64179 4.71108 4.83300 4.85068 4.90176 4.94611 5.02534 5.11022 5.18100 5.26786 5.28715 5.45970 5.49284 5.55994 5.58565 5.64010 5.71953 5.80109 5.87720 6.12107 6.16626 6.32084 6.50690 6.88569 7.08014 7.41230 8.94457 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015332 B = 0.004323 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.803869 B = 6475.734267 C = 7634.127260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.072 4.072 3 H 0.047 0.953 4 C 0.034 3.966 5 C -0.528 4.528 6 H 0.060 0.940 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.961 3.039 10 H -0.262 1.262 11 H -0.278 1.278 12 H -0.279 1.279 13 C 0.078 3.922 14 N -0.673 5.673 15 C 0.087 3.913 16 H 0.051 0.949 17 C 0.092 3.908 18 O -0.573 6.573 19 C -0.066 4.066 20 C -0.097 4.097 21 C -0.129 4.129 22 C -0.127 4.127 23 C -0.135 4.135 24 C -0.129 4.129 25 C -0.134 4.134 26 H 0.064 0.936 27 H 0.035 0.965 28 H 0.037 0.963 29 H -0.009 1.009 30 H -0.016 1.016 31 H 0.262 0.738 32 H 0.062 0.938 33 H 0.011 0.989 34 H 0.340 0.660 35 H 0.068 0.932 36 H 0.034 0.966 37 H 0.388 0.612 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.136 0.864 41 H 0.141 0.859 42 H 0.138 0.862 43 H 0.133 0.867 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.523 4.422 -21.293 21.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.091 4.091 3 H 0.066 0.934 4 C -0.004 4.004 5 C -0.566 4.566 6 H 0.078 0.922 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.786 3.214 10 H -0.186 1.186 11 H -0.204 1.204 12 H -0.205 1.205 13 C -0.051 4.051 14 N -0.307 5.307 15 C -0.023 4.023 16 H 0.069 0.931 17 C 0.013 3.987 18 O -0.379 6.379 19 C -0.103 4.103 20 C -0.097 4.097 21 C -0.147 4.147 22 C -0.145 4.145 23 C -0.153 4.153 24 C -0.147 4.147 25 C -0.152 4.152 26 H 0.083 0.917 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.009 0.991 30 H 0.002 0.998 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.029 0.971 34 H 0.160 0.840 35 H 0.086 0.914 36 H 0.052 0.948 37 H 0.236 0.764 38 H 0.098 0.902 39 H 0.112 0.888 40 H 0.154 0.846 41 H 0.158 0.842 42 H 0.155 0.845 43 H 0.151 0.849 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.299 4.573 -21.062 21.592 hybrid contribution 0.700 -0.220 1.204 1.410 sum 1.999 4.353 -19.858 20.427 Atomic orbital electron populations 1.21440 0.94551 1.00320 1.00315 1.20986 0.96777 0.98092 0.93277 0.93444 1.19002 0.93927 0.94712 0.92718 1.21652 1.34319 1.08532 0.92064 0.92209 1.25945 0.95221 0.96100 1.02612 1.70112 1.40337 1.22998 1.24210 0.85455 0.78096 0.78907 0.78953 1.18619 1.20407 1.20491 1.21888 0.95897 0.97511 0.89821 1.60601 1.63816 1.05762 1.00516 1.21680 0.95338 0.95038 0.90214 0.93129 1.22141 0.85129 0.93359 0.98059 1.86514 1.24093 1.38514 1.88823 1.20587 0.96951 0.95012 0.97790 1.20140 0.95323 0.95893 0.98362 1.21324 0.92328 1.00136 1.00864 1.21464 1.00188 0.94405 0.98417 1.21464 0.96833 0.98287 0.98736 1.21444 0.93482 0.99940 0.99797 1.21296 1.00018 0.94794 0.99062 0.91742 0.94594 0.94406 0.99089 0.99795 0.92934 0.91965 0.97128 0.83961 0.91384 0.94770 0.76377 0.90163 0.88840 0.84568 0.84157 0.84455 0.84924 0.85772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.40 8.89 71.98 0.64 -3.76 16 2 C -0.07 -3.13 2.48 -10.80 -0.03 -3.15 16 3 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 4 C 0.03 1.85 4.45 29.85 0.13 1.98 16 5 C -0.53 -30.58 8.41 25.60 0.22 -30.37 16 6 H 0.06 3.36 7.06 -2.91 -0.02 3.34 16 7 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 8 N -0.94 -58.02 13.29 21.45 0.28 -57.74 16 9 Si 0.96 45.21 29.54 68.60 2.03 47.24 16 10 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 13 C 0.08 2.86 4.87 86.30 0.42 3.28 16 14 N -0.67 -20.46 5.71 -491.55 -2.81 -23.26 16 15 C 0.09 2.13 2.43 44.92 0.11 2.24 16 16 H 0.05 1.28 7.80 -2.39 -0.02 1.26 16 17 C 0.09 1.95 6.80 71.98 0.49 2.44 16 18 O -0.57 -12.48 12.83 -148.98 -1.91 -14.39 16 19 C -0.07 -1.39 4.70 29.84 0.14 -1.25 16 20 C -0.10 -2.20 4.85 -19.87 -0.10 -2.29 16 21 C -0.13 -2.65 9.70 22.27 0.22 -2.43 16 22 C -0.13 -2.51 10.05 22.27 0.22 -2.28 16 23 C -0.14 -2.78 10.05 22.27 0.22 -2.56 16 24 C -0.13 -2.88 10.05 22.27 0.22 -2.66 16 25 C -0.13 -3.19 8.04 22.27 0.18 -3.01 16 26 H 0.06 2.33 7.75 -2.39 -0.02 2.31 16 27 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 28 H 0.04 1.61 6.95 -2.39 -0.02 1.59 16 29 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 30 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 31 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 32 H 0.06 2.29 7.36 -2.39 -0.02 2.27 16 33 H 0.01 0.41 8.06 -2.38 -0.02 0.39 16 34 H 0.34 10.34 5.48 -89.69 -0.49 9.85 16 35 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16 36 H 0.03 0.81 7.35 -2.39 -0.02 0.80 16 37 H 0.39 5.05 9.12 -74.06 -0.68 4.37 16 38 H 0.08 1.87 7.67 -2.39 -0.02 1.85 16 39 H 0.09 1.58 8.09 -2.39 -0.02 1.56 16 40 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 41 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 42 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 43 H 0.13 2.55 8.06 -2.91 -0.02 2.53 16 44 H 0.12 2.92 7.51 -2.91 -0.02 2.89 16 Total: -1.00 -68.90 355.34 0.95 -67.95 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: -0.20 Total: 23.67 kcal Atomic # 6 Polarization: -47.01 SS G_CDS: 3.55 Total: -43.46 kcal Atomic # 7 Polarization: -78.48 SS G_CDS: -2.52 Total: -81.00 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: -1.91 Total: -14.39 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -68.90 0.95 -67.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602547047.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.816 kcal (2) G-P(sol) polarization free energy of solvation -68.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds