Wall clock time and date at job start Mon Mar 30 2020 01:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 114.00286 * 2 1 4 4 C 1.52992 * 109.47492 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47608 * 184.99686 * 4 3 2 6 6 N 1.46907 * 109.46880 * 65.00169 * 4 3 2 7 7 C 1.46895 * 111.00034 * 85.00439 * 6 4 3 8 8 C 1.53006 * 109.46799 * 179.97438 * 7 6 4 9 9 H 1.08996 * 109.46884 * 55.00215 * 8 7 6 10 10 C 1.52997 * 109.47127 * 294.99463 * 8 7 6 11 11 C 1.52999 * 109.46623 * 174.99527 * 8 7 6 12 12 C 1.50707 * 109.47009 * 184.99986 * 11 8 7 13 13 H 1.07996 * 119.99521 * 359.97438 * 12 11 8 14 14 C 1.37873 * 120.00339 * 180.02562 * 12 11 8 15 15 N 1.31521 * 120.00003 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00392 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.46839 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47356 * 119.99073 * 16 14 12 19 19 H 1.48497 * 109.47175 * 239.99531 * 16 14 12 20 20 C 1.50703 * 109.47111 * 305.00167 * 4 3 2 21 21 C 1.38232 * 119.99687 * 79.72517 * 20 4 3 22 22 C 1.38237 * 119.99605 * 179.81076 * 21 20 4 23 23 C 1.38234 * 120.00230 * 0.39444 * 22 21 20 24 24 C 1.38241 * 119.99939 * 359.85861 * 23 22 21 25 25 C 1.38231 * 119.99811 * 259.99527 * 20 4 3 26 26 H 1.08997 * 109.47278 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46871 * 299.99852 * 1 2 3 28 28 H 1.09001 * 109.47472 * 59.99964 * 1 2 3 29 29 H 1.09005 * 109.47046 * 60.00151 * 3 2 1 30 30 H 1.09003 * 109.46767 * 300.00277 * 3 2 1 31 31 H 1.00900 * 110.99937 * 321.04022 * 6 4 3 32 32 H 1.09001 * 109.47563 * 59.99604 * 7 6 4 33 33 H 1.09000 * 109.46722 * 299.99217 * 7 6 4 34 34 H 1.09002 * 109.47153 * 180.02562 * 10 8 7 35 35 H 1.09001 * 109.46832 * 60.00321 * 10 8 7 36 36 H 1.09004 * 109.47261 * 300.00303 * 10 8 7 37 37 H 1.08994 * 109.47465 * 305.00017 * 11 8 7 38 38 H 1.08998 * 109.47565 * 65.00449 * 11 8 7 39 39 H 0.96995 * 120.00234 * 180.02562 * 15 14 12 40 40 H 1.07996 * 120.00338 * 359.97438 * 21 20 4 41 41 H 1.08000 * 120.00197 * 180.23250 * 22 21 20 42 42 H 1.07998 * 120.00534 * 179.83698 * 23 22 21 43 43 H 1.07999 * 120.00120 * 179.97438 * 24 23 22 44 44 H 1.08001 * 119.99805 * 359.97438 * 25 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9785 2.1765 0.0889 6 7 3.9768 0.5627 -1.2563 7 6 4.1189 1.5664 -2.3194 8 6 4.5795 0.8824 -3.6082 9 1 3.8884 0.0779 -3.8595 10 6 5.9821 0.3056 -3.4062 11 6 4.6075 1.9048 -4.7461 12 6 4.9419 1.2076 -6.0397 13 1 5.1174 0.1420 -6.0490 14 6 5.0250 1.9303 -7.2109 15 7 4.8118 3.2280 -7.1994 16 14 5.4388 1.0660 -8.8144 17 1 5.6307 -0.3844 -8.5597 18 1 4.3272 1.2564 -9.7806 19 1 6.6877 1.6389 -9.3775 20 6 3.9723 0.3323 1.1629 21 6 3.8923 -1.0451 1.0790 22 6 4.2968 -1.8270 2.1448 23 6 4.7735 -1.2313 3.2975 24 6 4.8486 0.1464 3.3833 25 6 4.4478 0.9282 2.3160 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8463 -0.8900 31 1 3.3465 -0.1738 -1.5361 32 1 4.8565 2.3110 -2.0200 33 1 3.1589 2.0539 -2.4894 34 1 6.3104 -0.1813 -4.3245 35 1 5.9621 -0.4228 -2.5955 36 1 6.6732 1.1102 -3.1548 37 1 3.6304 2.3802 -4.8316 38 1 5.3628 2.6620 -4.5358 39 1 4.8698 3.7364 -8.0234 40 1 3.5164 -1.5105 0.1799 41 1 4.2378 -2.9034 2.0780 42 1 5.0870 -1.8421 4.1312 43 1 5.2207 0.6119 4.2840 44 1 4.5065 2.0045 2.3829 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602547421.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:00 Heat of formation + Delta-G solvation = -38.065366 kcal Electronic energy + Delta-G solvation = -21501.566283 eV Core-core repulsion = 18418.130398 eV Total energy + Delta-G solvation = -3083.435885 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.64490 -37.95517 -36.56312 -34.37639 -32.30578 -30.88344 -30.50573 -28.48641 -26.77669 -26.20038 -25.05855 -23.32956 -22.66847 -21.95932 -20.43206 -19.07500 -17.00882 -16.45137 -16.22056 -15.98322 -15.77905 -15.05241 -14.95456 -14.47173 -14.17605 -13.99777 -13.64306 -13.24362 -12.96005 -12.73016 -12.46644 -12.32577 -12.10473 -11.79496 -11.56555 -11.44471 -11.32037 -10.92801 -10.86832 -10.82405 -10.72562 -10.26167 -10.19201 -9.79351 -9.66704 -9.13552 -8.93441 -8.80732 -8.59501 -8.31420 -8.07412 -5.96158 -3.96894 1.44491 1.53911 3.33268 3.40858 3.45281 3.59429 3.92069 4.44568 4.54133 4.75395 4.92346 5.00200 5.05298 5.18271 5.21953 5.24980 5.32403 5.39673 5.42140 5.43343 5.54782 5.63904 5.72610 5.77662 5.92586 6.05743 6.16795 6.19511 6.44047 6.52188 6.58307 6.62240 6.73387 6.75574 6.97065 7.06686 7.11053 7.23459 7.24373 7.41339 7.69091 7.73245 7.87931 8.04488 8.48900 9.09799 9.66506 11.15460 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023317 B = 0.003521 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.539973 B = 7951.138570 C = 8429.834913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.381 6.381 3 C 0.033 3.967 4 C 0.128 3.872 5 H 0.096 0.904 6 N -0.675 5.675 7 C 0.063 3.937 8 C -0.081 4.081 9 H 0.053 0.947 10 C -0.123 4.123 11 C 0.027 3.973 12 C -0.510 4.510 13 H 0.057 0.943 14 C 0.054 3.946 15 N -0.898 5.898 16 Si 0.889 3.111 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.058 4.058 21 C -0.073 4.073 22 C -0.128 4.128 23 C -0.128 4.128 24 C -0.128 4.128 25 C -0.120 4.120 26 H 0.085 0.915 27 H 0.037 0.963 28 H 0.041 0.959 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.347 0.653 32 H 0.066 0.934 33 H 0.023 0.977 34 H 0.053 0.947 35 H 0.042 0.958 36 H 0.039 0.961 37 H 0.012 0.988 38 H 0.016 0.984 39 H 0.258 0.742 40 H 0.125 0.875 41 H 0.117 0.883 42 H 0.114 0.886 43 H 0.116 0.884 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.585 -5.700 20.597 22.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.299 6.299 3 C -0.045 4.045 4 C 0.017 3.983 5 H 0.114 0.886 6 N -0.306 5.306 7 C -0.066 4.066 8 C -0.100 4.100 9 H 0.072 0.928 10 C -0.180 4.180 11 C -0.010 4.010 12 C -0.549 4.549 13 H 0.075 0.925 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.717 3.283 17 H -0.197 1.197 18 H -0.212 1.212 19 H -0.211 1.211 20 C -0.059 4.059 21 C -0.091 4.091 22 C -0.146 4.146 23 C -0.146 4.146 24 C -0.146 4.146 25 C -0.139 4.139 26 H 0.103 0.897 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.166 0.834 32 H 0.085 0.915 33 H 0.041 0.959 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.030 0.970 38 H 0.034 0.966 39 H 0.068 0.932 40 H 0.142 0.858 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.806 -5.700 20.630 21.936 hybrid contribution -0.977 0.185 -1.155 1.524 sum -5.783 -5.515 19.475 21.051 Atomic orbital electron populations 1.22717 0.81252 1.02638 0.99787 1.87870 1.19410 1.27325 1.95332 1.23270 0.95393 0.85306 1.00541 1.20595 0.90157 0.97549 0.89980 0.88588 1.60586 1.54004 1.13366 1.02627 1.22217 0.98926 0.93883 0.91536 1.21183 0.96663 0.98866 0.93312 0.92839 1.21584 0.96418 0.99762 1.00220 1.19123 0.96873 0.93542 0.91483 1.21286 1.46654 0.94463 0.92478 0.92498 1.25022 0.95674 0.94828 0.99087 1.69978 1.50429 1.06070 1.27293 0.86578 0.77922 0.79888 0.83878 1.19726 1.21152 1.21098 1.19644 0.98026 0.94251 0.93957 1.20927 0.96964 0.93118 0.98078 1.21144 0.99952 0.99658 0.93851 1.21064 1.00695 0.94863 0.97993 1.20995 1.01111 0.93957 0.98505 1.20977 0.99938 0.99523 0.93441 0.89683 0.94412 0.94079 0.93145 0.92682 0.83354 0.91520 0.95864 0.92839 0.93849 0.94206 0.97011 0.96568 0.93198 0.85751 0.86540 0.86744 0.86613 0.86579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.38 -4.58 8.48 -35.23 -0.30 -4.88 16 3 C 0.03 0.39 5.60 37.15 0.21 0.59 16 4 C 0.13 1.61 2.65 -68.86 -0.18 1.43 16 5 H 0.10 1.17 7.66 -51.93 -0.40 0.77 16 6 N -0.67 -9.95 5.16 -107.95 -0.56 -10.50 16 7 C 0.06 1.07 4.87 -3.82 -0.02 1.05 16 8 C -0.08 -1.67 2.48 -90.62 -0.22 -1.89 16 9 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 10 C -0.12 -2.43 8.89 37.16 0.33 -2.10 16 11 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 12 C -0.51 -14.38 8.41 -34.44 -0.29 -14.67 16 13 H 0.06 1.57 7.06 -52.49 -0.37 1.20 16 14 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 15 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 16 Si 0.89 21.84 29.54 -169.99 -5.02 16.81 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 C -0.06 -0.73 4.83 -104.62 -0.51 -1.24 16 21 C -0.07 -0.93 8.31 -39.58 -0.33 -1.26 16 22 C -0.13 -1.46 10.05 -39.58 -0.40 -1.86 16 23 C -0.13 -1.36 10.05 -39.58 -0.40 -1.76 16 24 C -0.13 -1.36 10.05 -39.58 -0.40 -1.75 16 25 C -0.12 -1.38 9.67 -39.58 -0.38 -1.76 16 26 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.04 0.31 8.14 -51.92 -0.42 -0.11 16 28 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.66 7.35 -51.93 -0.38 0.28 16 31 H 0.35 5.16 7.29 -39.29 -0.29 4.88 16 32 H 0.07 1.16 8.06 -51.93 -0.42 0.74 16 33 H 0.02 0.40 7.36 -51.93 -0.38 0.02 16 34 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 35 H 0.04 0.78 7.75 -51.93 -0.40 0.38 16 36 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.12 1.63 6.99 -52.49 -0.37 1.26 16 41 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 42 H 0.11 0.96 8.06 -52.49 -0.42 0.53 16 43 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 44 H 0.12 1.13 8.04 -52.49 -0.42 0.70 16 LS Contribution 356.68 15.07 5.38 5.38 Total: -1.00 -30.54 356.68 -9.04 -39.57 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -7.57 Total: 1.73 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: -1.70 Total: -21.75 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.18 Total: -36.87 kcal Atomic # 8 Polarization: -4.58 SS G_CDS: -0.30 Total: -4.88 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.54 -9.04 -39.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602547421.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.508 kcal (2) G-P(sol) polarization free energy of solvation -30.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds