Wall clock time and date at job start Mon Mar 30 2020 01:43:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42892 * 1
3 3 C 1.42906 * 114.00272 * 2 1
4 4 C 1.53001 * 109.47189 * 179.97438 * 3 2 1
5 5 H 1.09000 * 109.47117 * 174.99593 * 4 3 2
6 6 N 1.46896 * 109.47252 * 294.99800 * 4 3 2
7 7 C 1.46900 * 111.00228 * 275.00348 * 6 4 3
8 8 C 1.53000 * 109.47271 * 180.02562 * 7 6 4
9 9 H 1.08995 * 109.47092 * 54.99870 * 8 7 6
10 10 C 1.52997 * 109.46811 * 294.99447 * 8 7 6
11 11 C 1.53003 * 109.46850 * 174.99911 * 8 7 6
12 12 C 1.50704 * 109.46922 * 184.99959 * 11 8 7
13 13 H 1.07998 * 119.99356 * 359.97438 * 12 11 8
14 14 C 1.37869 * 120.00047 * 179.97438 * 12 11 8
15 15 N 1.31516 * 119.99899 * 0.02562 * 14 12 11
16 16 Si 1.86800 * 120.00302 * 179.97438 * 14 12 11
17 17 H 1.48500 * 109.46878 * 59.99621 * 16 14 12
18 18 H 1.48494 * 109.47536 * 179.97438 * 16 14 12
19 19 H 1.48505 * 109.47148 * 300.00327 * 16 14 12
20 20 C 1.50703 * 109.46987 * 55.00239 * 4 3 2
21 21 C 1.38235 * 120.00292 * 99.99885 * 20 4 3
22 22 C 1.38230 * 119.99899 * 179.97438 * 21 20 4
23 23 C 1.38235 * 120.00326 * 359.95697 * 22 21 20
24 24 C 1.38234 * 119.99814 * 359.97438 * 23 22 21
25 25 C 1.38234 * 119.99503 * 279.97178 * 20 4 3
26 26 H 1.08994 * 109.47392 * 180.02562 * 1 2 3
27 27 H 1.09001 * 109.47380 * 300.00335 * 1 2 3
28 28 H 1.08999 * 109.47095 * 59.99886 * 1 2 3
29 29 H 1.08999 * 109.47171 * 59.99483 * 3 2 1
30 30 H 1.09001 * 109.47076 * 299.99985 * 3 2 1
31 31 H 1.00898 * 110.99990 * 38.95536 * 6 4 3
32 32 H 1.09004 * 109.46565 * 300.00090 * 7 6 4
33 33 H 1.09001 * 109.47168 * 59.99547 * 7 6 4
34 34 H 1.08997 * 109.46806 * 180.02562 * 10 8 7
35 35 H 1.08995 * 109.47638 * 300.00089 * 10 8 7
36 36 H 1.09004 * 109.47181 * 60.00562 * 10 8 7
37 37 H 1.09000 * 109.47079 * 304.99259 * 11 8 7
38 38 H 1.08998 * 109.46992 * 64.99811 * 11 8 7
39 39 H 0.96998 * 119.99853 * 179.97438 * 15 14 12
40 40 H 1.08001 * 119.99730 * 359.97438 * 21 20 4
41 41 H 1.08000 * 120.00376 * 179.97438 * 22 21 20
42 42 H 1.08000 * 120.00616 * 179.72578 * 23 22 21
43 43 H 1.08001 * 120.00299 * 179.97438 * 24 23 22
44 44 H 1.07997 * 120.00455 * 0.02562 * 25 20 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5355 1.1846 0.0006
5 1 3.9786 2.1764 -0.0890
6 7 3.9769 0.5627 1.2561
7 6 4.1189 1.5664 2.3194
8 6 4.5796 0.8825 3.6081
9 1 5.4940 0.3216 3.4149
10 6 3.4888 -0.0728 4.0965
11 6 4.8474 1.9413 4.6797
12 6 5.4174 1.2798 5.9080
13 1 5.5727 0.2112 5.9229
14 6 5.7407 2.0390 7.0125
15 7 5.5511 3.3403 6.9944
16 14 6.4466 1.2191 8.5353
17 1 7.7176 0.5356 8.1852
18 1 6.7079 2.2468 9.5748
19 1 5.4761 0.2230 9.0561
20 6 3.9723 0.3324 -1.1629
21 6 4.4477 0.9282 -2.3161
22 6 4.8489 0.1464 -3.3832
23 6 4.7755 -1.2313 -3.2968
24 6 4.3014 -1.8272 -2.1431
25 6 3.8981 -1.0453 -1.0768
26 1 -0.3634 -1.0276 0.0005
27 1 -0.3634 0.5139 0.8899
28 1 -0.3633 0.5138 -0.8900
29 1 1.6886 1.8464 0.8899
30 1 1.6886 1.8464 -0.8900
31 1 3.3465 -0.1737 1.5360
32 1 4.8565 2.3110 2.0198
33 1 3.1589 2.0539 2.4894
34 1 3.8168 -0.5597 5.0148
35 1 2.5744 0.4881 4.2897
36 1 3.2979 -0.8271 3.3331
37 1 5.5593 2.6729 4.2976
38 1 3.9141 2.4422 4.9367
39 1 5.7782 3.8743 7.7717
40 1 4.5057 2.0046 -2.3834
41 1 5.2199 0.6118 -4.2843
42 1 5.0847 -1.8421 -4.1321
43 1 4.2437 -2.9036 -2.0757
44 1 3.5267 -1.5109 -0.1759
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000602547423.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:43:04
Heat of formation + Delta-G solvation = -37.646085 kcal
Electronic energy + Delta-G solvation = -21533.247393 eV
Core-core repulsion = 18449.829689 eV
Total energy + Delta-G solvation = -3083.417704 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 277.178 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-39.65188 -37.97030 -36.62680 -34.36539 -32.32043 -30.87092 -30.47958 -28.49165
-26.83682 -26.21941 -25.19504 -23.38681 -22.63319 -21.93955 -20.37781 -18.99257
-17.05363 -16.46465 -16.31451 -15.96268 -15.83114 -15.10310 -14.96489 -14.52351
-14.27759 -13.83073 -13.50413 -13.17949 -13.05969 -12.85529 -12.49917 -12.29358
-12.10129 -11.78592 -11.77530 -11.50459 -11.36677 -10.88544 -10.88035 -10.83826
-10.72157 -10.31641 -10.17468 -9.81799 -9.67376 -9.13658 -8.96094 -8.80483
-8.59811 -8.30568 -8.09528 -5.95570 -3.96548 1.44855 1.54276 3.36241
3.40390 3.43194 3.58773 3.92176 4.44938 4.54460 4.75172 4.92178
5.00034 5.05532 5.17651 5.21696 5.23942 5.31548 5.40190 5.41867
5.42821 5.53464 5.64136 5.73175 5.82630 5.84620 6.05765 6.09792
6.17405 6.27557 6.49626 6.53569 6.59318 6.62152 6.73985 6.93872
7.02931 7.11210 7.14118 7.20692 7.41700 7.70465 7.72964 7.88706
8.04811 8.48938 9.09613 9.66742 11.15976
Molecular weight = 277.18amu
Principal moments of inertia in cm(-1)
A = 0.022670 B = 0.003521 C = 0.003330
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1234.838409 B = 7950.599008 C = 8406.193705
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.033 3.967
2 O -0.381 6.381
3 C 0.034 3.966
4 C 0.127 3.873
5 H 0.097 0.903
6 N -0.678 5.678
7 C 0.063 3.937
8 C -0.084 4.084
9 H 0.066 0.934
10 C -0.133 4.133
11 C 0.029 3.971
12 C -0.513 4.513
13 H 0.056 0.944
14 C 0.055 3.945
15 N -0.898 5.898
16 Si 0.890 3.110
17 H -0.277 1.277
18 H -0.288 1.288
19 H -0.278 1.278
20 C -0.059 4.059
21 C -0.120 4.120
22 C -0.127 4.127
23 C -0.128 4.128
24 C -0.128 4.128
25 C -0.073 4.073
26 H 0.085 0.915
27 H 0.040 0.960
28 H 0.038 0.962
29 H 0.055 0.945
30 H 0.051 0.949
31 H 0.348 0.652
32 H 0.067 0.933
33 H 0.023 0.977
34 H 0.062 0.938
35 H 0.039 0.961
36 H 0.032 0.968
37 H 0.015 0.985
38 H 0.013 0.987
39 H 0.260 0.740
40 H 0.117 0.883
41 H 0.116 0.884
42 H 0.115 0.885
43 H 0.117 0.883
44 H 0.124 0.876
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.040 -6.012 -19.806 22.205
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 O -0.299 6.299
3 C -0.045 4.045
4 C 0.017 3.983
5 H 0.115 0.885
6 N -0.310 5.310
7 C -0.065 4.065
8 C -0.102 4.102
9 H 0.084 0.916
10 C -0.190 4.190
11 C -0.009 4.009
12 C -0.551 4.551
13 H 0.074 0.926
14 C -0.145 4.145
15 N -0.538 5.538
16 Si 0.718 3.282
17 H -0.203 1.203
18 H -0.214 1.214
19 H -0.203 1.203
20 C -0.059 4.059
21 C -0.138 4.138
22 C -0.146 4.146
23 C -0.146 4.146
24 C -0.146 4.146
25 C -0.091 4.091
26 H 0.103 0.897
27 H 0.059 0.941
28 H 0.056 0.944
29 H 0.073 0.927
30 H 0.069 0.931
31 H 0.169 0.831
32 H 0.086 0.914
33 H 0.041 0.959
34 H 0.081 0.919
35 H 0.058 0.942
36 H 0.051 0.949
37 H 0.033 0.967
38 H 0.032 0.968
39 H 0.069 0.931
40 H 0.135 0.865
41 H 0.134 0.866
42 H 0.133 0.867
43 H 0.135 0.865
44 H 0.142 0.858
Dipole moment (debyes) X Y Z Total
from point charges -7.245 -6.003 -19.842 21.959
hybrid contribution -0.785 0.166 1.096 1.358
sum -8.030 -5.837 -18.746 21.212
Atomic orbital electron populations
1.22714 0.81277 1.02634 0.99775 1.87874 1.19388 1.27337 1.95328
1.23272 0.95408 0.85291 1.00523 1.20602 0.90162 0.97603 0.89983
0.88533 1.60630 1.54263 1.13494 1.02619 1.22206 0.98990 0.93826
0.91510 1.21212 0.97870 0.97984 0.93177 0.91575 1.21729 0.98379
0.98445 1.00487 1.19102 0.96613 0.93109 0.92049 1.21208 1.41432
0.93883 0.98570 0.92606 1.25013 0.95983 0.94818 0.98714 1.69956
1.48840 1.04822 1.30149 0.86691 0.79668 0.79035 0.82805 1.20257
1.21403 1.20318 1.19647 0.98059 0.94251 0.93968 1.20977 0.99887
0.99545 0.93435 1.20994 1.01088 0.93955 0.98514 1.21065 1.00692
0.94867 0.97977 1.21144 0.99949 0.99657 0.93844 1.20923 0.97015
0.93127 0.98065 0.89682 0.94129 0.94383 0.92728 0.93103 0.83098
0.91435 0.95923 0.91916 0.94162 0.94878 0.96679 0.96828 0.93074
0.86544 0.86589 0.86724 0.86525 0.85813
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.30 11.01 101.05 1.11 1.41 16
2 O -0.38 -4.57 8.50 -35.23 -0.30 -4.87 16
3 C 0.03 0.39 5.60 37.16 0.21 0.60 16
4 C 0.13 1.63 2.65 -68.86 -0.18 1.45 16
5 H 0.10 1.19 7.66 -51.93 -0.40 0.79 16
6 N -0.68 -10.22 5.70 -107.95 -0.62 -10.83 16
7 C 0.06 1.09 4.94 -3.82 -0.02 1.07 16
8 C -0.08 -1.72 2.55 -90.62 -0.23 -1.95 16
9 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16
10 C -0.13 -2.52 8.77 37.16 0.33 -2.19 16
11 C 0.03 0.74 4.45 -27.88 -0.12 0.61 16
12 C -0.51 -14.43 8.41 -34.44 -0.29 -14.72 16
13 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16
14 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16
15 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16
16 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16
17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16
19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16
20 C -0.06 -0.75 4.83 -104.62 -0.51 -1.26 16
21 C -0.12 -1.39 9.67 -39.59 -0.38 -1.78 16
22 C -0.13 -1.37 10.05 -39.59 -0.40 -1.77 16
23 C -0.13 -1.37 10.05 -39.58 -0.40 -1.77 16
24 C -0.13 -1.48 10.05 -39.58 -0.40 -1.88 16
25 C -0.07 -0.95 8.32 -39.58 -0.33 -1.28 16
26 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16
27 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16
28 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16
29 H 0.05 0.65 7.35 -51.93 -0.38 0.27 16
30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16
31 H 0.35 5.24 5.54 -39.29 -0.22 5.02 16
32 H 0.07 1.19 8.06 -51.93 -0.42 0.77 16
33 H 0.02 0.38 7.36 -51.93 -0.38 0.00 16
34 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16
35 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16
36 H 0.03 0.54 6.68 -51.93 -0.35 0.19 16
37 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16
38 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16
39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16
40 H 0.12 1.14 8.04 -52.49 -0.42 0.72 16
41 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16
42 H 0.11 0.97 8.06 -52.49 -0.42 0.54 16
43 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16
44 H 0.12 1.64 7.00 -52.49 -0.37 1.28 16
LS Contribution 354.45 15.07 5.34 5.34
Total: -1.00 -30.54 354.45 -9.02 -39.56
By element:
Atomic # 1 Polarization: 9.75 SS G_CDS: -7.45 Total: 2.30 kcal
Atomic # 6 Polarization: -20.24 SS G_CDS: -1.71 Total: -21.94 kcal
Atomic # 7 Polarization: -37.32 SS G_CDS: 0.12 Total: -37.20 kcal
Atomic # 8 Polarization: -4.57 SS G_CDS: -0.30 Total: -4.87 kcal
Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal
Total LS contribution 5.34 Total: 5.34 kcal
Total: -30.54 -9.02 -39.56 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602547423.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.914 kcal
(2) G-P(sol) polarization free energy of solvation -30.544 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.630 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.016 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.560 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.646 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds