Wall clock time and date at job start Mon Mar 30 2020 01:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42906 * 114.00272 * 2 1 4 4 C 1.53001 * 109.47189 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47117 * 174.99593 * 4 3 2 6 6 N 1.46896 * 109.47252 * 294.99800 * 4 3 2 7 7 C 1.46900 * 111.00228 * 275.00348 * 6 4 3 8 8 C 1.53000 * 109.47271 * 180.02562 * 7 6 4 9 9 H 1.08995 * 109.47092 * 54.99870 * 8 7 6 10 10 C 1.52997 * 109.46811 * 294.99447 * 8 7 6 11 11 C 1.53003 * 109.46850 * 174.99911 * 8 7 6 12 12 C 1.50704 * 109.46922 * 184.99959 * 11 8 7 13 13 H 1.07998 * 119.99356 * 359.97438 * 12 11 8 14 14 C 1.37869 * 120.00047 * 179.97438 * 12 11 8 15 15 N 1.31516 * 119.99899 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00302 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46878 * 59.99621 * 16 14 12 18 18 H 1.48494 * 109.47536 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47148 * 300.00327 * 16 14 12 20 20 C 1.50703 * 109.46987 * 55.00239 * 4 3 2 21 21 C 1.38235 * 120.00292 * 99.99885 * 20 4 3 22 22 C 1.38230 * 119.99899 * 179.97438 * 21 20 4 23 23 C 1.38235 * 120.00326 * 359.95697 * 22 21 20 24 24 C 1.38234 * 119.99814 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.99503 * 279.97178 * 20 4 3 26 26 H 1.08994 * 109.47392 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47380 * 300.00335 * 1 2 3 28 28 H 1.08999 * 109.47095 * 59.99886 * 1 2 3 29 29 H 1.08999 * 109.47171 * 59.99483 * 3 2 1 30 30 H 1.09001 * 109.47076 * 299.99985 * 3 2 1 31 31 H 1.00898 * 110.99990 * 38.95536 * 6 4 3 32 32 H 1.09004 * 109.46565 * 300.00090 * 7 6 4 33 33 H 1.09001 * 109.47168 * 59.99547 * 7 6 4 34 34 H 1.08997 * 109.46806 * 180.02562 * 10 8 7 35 35 H 1.08995 * 109.47638 * 300.00089 * 10 8 7 36 36 H 1.09004 * 109.47181 * 60.00562 * 10 8 7 37 37 H 1.09000 * 109.47079 * 304.99259 * 11 8 7 38 38 H 1.08998 * 109.46992 * 64.99811 * 11 8 7 39 39 H 0.96998 * 119.99853 * 179.97438 * 15 14 12 40 40 H 1.08001 * 119.99730 * 359.97438 * 21 20 4 41 41 H 1.08000 * 120.00376 * 179.97438 * 22 21 20 42 42 H 1.08000 * 120.00616 * 179.72578 * 23 22 21 43 43 H 1.08001 * 120.00299 * 179.97438 * 24 23 22 44 44 H 1.07997 * 120.00455 * 0.02562 * 25 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9786 2.1764 -0.0890 6 7 3.9769 0.5627 1.2561 7 6 4.1189 1.5664 2.3194 8 6 4.5796 0.8825 3.6081 9 1 5.4940 0.3216 3.4149 10 6 3.4888 -0.0728 4.0965 11 6 4.8474 1.9413 4.6797 12 6 5.4174 1.2798 5.9080 13 1 5.5727 0.2112 5.9229 14 6 5.7407 2.0390 7.0125 15 7 5.5511 3.3403 6.9944 16 14 6.4466 1.2191 8.5353 17 1 7.7176 0.5356 8.1852 18 1 6.7079 2.2468 9.5748 19 1 5.4761 0.2230 9.0561 20 6 3.9723 0.3324 -1.1629 21 6 4.4477 0.9282 -2.3161 22 6 4.8489 0.1464 -3.3832 23 6 4.7755 -1.2313 -3.2968 24 6 4.3014 -1.8272 -2.1431 25 6 3.8981 -1.0453 -1.0768 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6886 1.8464 0.8899 30 1 1.6886 1.8464 -0.8900 31 1 3.3465 -0.1737 1.5360 32 1 4.8565 2.3110 2.0198 33 1 3.1589 2.0539 2.4894 34 1 3.8168 -0.5597 5.0148 35 1 2.5744 0.4881 4.2897 36 1 3.2979 -0.8271 3.3331 37 1 5.5593 2.6729 4.2976 38 1 3.9141 2.4422 4.9367 39 1 5.7782 3.8743 7.7717 40 1 4.5057 2.0046 -2.3834 41 1 5.2199 0.6118 -4.2843 42 1 5.0847 -1.8421 -4.1321 43 1 4.2437 -2.9036 -2.0757 44 1 3.5267 -1.5109 -0.1759 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602547423.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:03 Heat of formation + Delta-G solvation = -54.953112 kcal Electronic energy + Delta-G solvation = -21533.997882 eV Core-core repulsion = 18449.829689 eV Total energy + Delta-G solvation = -3084.168193 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.58584 -38.88797 -37.98278 -35.84402 -34.21567 -31.90360 -31.54441 -29.53451 -28.64502 -27.17925 -26.62564 -24.71998 -23.86364 -23.08791 -21.34981 -20.66000 -18.56685 -17.87064 -17.32018 -16.98732 -16.82568 -16.52868 -16.06293 -15.85980 -15.57699 -15.06268 -14.71503 -14.40633 -14.14527 -14.09450 -13.90357 -13.56106 -13.33894 -13.17501 -13.04831 -12.78111 -12.74632 -12.58727 -12.32317 -12.21531 -11.97162 -11.73609 -11.69926 -11.50406 -11.06742 -10.93477 -10.62786 -10.51846 -9.67464 -9.51852 -9.27842 -8.16533 -6.25446 0.57845 0.67370 1.40620 1.43376 1.50985 2.42821 2.72210 3.05140 3.16866 3.36110 3.81397 3.99526 4.14307 4.20326 4.27154 4.28906 4.38987 4.41032 4.42807 4.49302 4.51297 4.57694 4.59449 4.76361 4.83772 4.85783 4.87972 4.88770 5.04615 5.21148 5.24877 5.31360 5.39174 5.48157 5.56002 5.68502 5.75344 5.79692 5.84405 5.90674 6.08133 6.21238 6.28410 6.34299 6.50327 6.90137 7.42644 8.95321 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022670 B = 0.003521 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.838409 B = 7950.599008 C = 8406.193705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.397 6.397 3 C 0.039 3.961 4 C 0.127 3.873 5 H 0.099 0.901 6 N -0.679 5.679 7 C 0.077 3.923 8 C -0.075 4.075 9 H 0.054 0.946 10 C -0.124 4.124 11 C 0.035 3.965 12 C -0.530 4.530 13 H 0.060 0.940 14 C -0.001 4.001 15 N -0.935 5.935 16 Si 0.960 3.040 17 H -0.269 1.269 18 H -0.284 1.284 19 H -0.267 1.267 20 C -0.073 4.073 21 C -0.130 4.130 22 C -0.131 4.131 23 C -0.131 4.131 24 C -0.137 4.137 25 C -0.091 4.091 26 H 0.096 0.904 27 H 0.041 0.959 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.349 0.651 32 H 0.060 0.940 33 H 0.025 0.975 34 H 0.045 0.955 35 H 0.040 0.960 36 H 0.061 0.939 37 H -0.013 1.013 38 H -0.009 1.009 39 H 0.262 0.738 40 H 0.131 0.869 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.132 0.868 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.202 -7.213 -21.008 23.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.316 6.316 3 C -0.040 4.040 4 C 0.017 3.983 5 H 0.117 0.883 6 N -0.311 5.311 7 C -0.052 4.052 8 C -0.094 4.094 9 H 0.073 0.927 10 C -0.181 4.181 11 C -0.003 4.003 12 C -0.568 4.568 13 H 0.078 0.922 14 C -0.199 4.199 15 N -0.576 5.576 16 Si 0.785 3.215 17 H -0.194 1.194 18 H -0.210 1.210 19 H -0.192 1.192 20 C -0.074 4.074 21 C -0.149 4.149 22 C -0.149 4.149 23 C -0.149 4.149 24 C -0.155 4.155 25 C -0.109 4.109 26 H 0.115 0.885 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.170 0.830 32 H 0.079 0.921 33 H 0.044 0.956 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.080 0.920 37 H 0.006 0.994 38 H 0.009 0.991 39 H 0.071 0.929 40 H 0.149 0.851 41 H 0.158 0.842 42 H 0.157 0.843 43 H 0.149 0.851 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.418 -7.218 -21.061 23.467 hybrid contribution -0.747 0.537 1.385 1.663 sum -8.165 -6.681 -19.676 22.326 Atomic orbital electron populations 1.22870 0.79945 1.03659 1.00365 1.87854 1.20876 1.27416 1.95442 1.23172 0.94457 0.85423 1.00911 1.20636 0.91218 0.97636 0.88831 0.88267 1.60546 1.54897 1.12957 1.02687 1.21895 0.98741 0.93793 0.90724 1.21004 0.98223 0.96806 0.93338 0.92722 1.21618 0.97491 0.98524 1.00492 1.18982 0.94479 0.93685 0.93126 1.21617 1.41355 0.94252 0.99594 0.92218 1.25930 0.96346 0.95397 1.02188 1.70090 1.49933 1.06359 1.31210 0.85578 0.79176 0.78153 0.78623 1.19382 1.20977 1.19196 1.19690 0.99053 0.94287 0.94364 1.21227 0.99716 1.00569 0.93341 1.21341 1.00321 0.94132 0.99065 1.21407 0.99862 0.95309 0.98328 1.21394 0.99766 1.00515 0.93835 1.20960 0.98086 0.93466 0.98385 0.88518 0.94024 0.93277 0.93301 0.91644 0.83036 0.92129 0.95641 0.93628 0.94116 0.91991 0.99430 0.99099 0.92944 0.85128 0.84209 0.84318 0.85056 0.86809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.72 16 2 O -0.40 -9.09 8.50 -148.98 -1.27 -10.35 16 3 C 0.04 0.86 5.60 71.98 0.40 1.26 16 4 C 0.13 3.17 2.65 44.17 0.12 3.28 16 5 H 0.10 2.38 7.66 -2.39 -0.02 2.36 16 6 N -0.68 -20.15 5.70 -495.45 -2.82 -22.98 16 7 C 0.08 2.69 4.94 86.30 0.43 3.12 16 8 C -0.07 -3.12 2.55 -10.79 -0.03 -3.15 16 9 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 10 C -0.12 -4.65 8.77 71.98 0.63 -4.02 16 11 C 0.03 1.85 4.45 29.85 0.13 1.98 16 12 C -0.53 -30.33 8.41 25.60 0.22 -30.12 16 13 H 0.06 3.29 7.06 -2.91 -0.02 3.27 16 14 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 15 N -0.94 -57.52 13.29 21.44 0.28 -57.24 16 16 Si 0.96 44.90 29.54 68.60 2.03 46.92 16 17 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 18 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 19 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 20 C -0.07 -1.81 4.83 -19.87 -0.10 -1.91 16 21 C -0.13 -2.81 9.67 22.27 0.22 -2.59 16 22 C -0.13 -2.49 10.05 22.27 0.22 -2.27 16 23 C -0.13 -2.50 10.05 22.27 0.22 -2.28 16 24 C -0.14 -2.96 10.05 22.27 0.22 -2.74 16 25 C -0.09 -2.27 8.32 22.27 0.19 -2.09 16 26 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.05 1.13 7.35 -2.39 -0.02 1.11 16 30 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.35 10.24 5.54 -89.70 -0.50 9.74 16 32 H 0.06 2.18 8.06 -2.38 -0.02 2.16 16 33 H 0.03 0.87 7.36 -2.39 -0.02 0.85 16 34 H 0.04 1.85 6.95 -2.39 -0.02 1.83 16 35 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.06 1.95 6.68 -2.39 -0.02 1.94 16 37 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 38 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 39 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 40 H 0.13 2.33 8.04 -2.91 -0.02 2.31 16 41 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 42 H 0.14 1.91 8.06 -2.91 -0.02 1.88 16 43 H 0.13 2.32 8.06 -2.91 -0.02 2.29 16 44 H 0.11 2.99 7.00 -2.91 -0.02 2.97 16 Total: -1.00 -65.75 354.45 3.26 -62.49 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 0.46 Total: 20.55 kcal Atomic # 6 Polarization: -43.98 SS G_CDS: 4.58 Total: -39.40 kcal Atomic # 7 Polarization: -77.67 SS G_CDS: -2.54 Total: -80.21 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: -1.27 Total: -10.35 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -65.75 3.26 -62.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602547423.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.536 kcal (2) G-P(sol) polarization free energy of solvation -65.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds