Wall clock time and date at job start Mon Mar 30 2020 01:43:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42892 * 1
3 3 C 1.42906 * 114.00272 * 2 1
4 4 C 1.53001 * 109.47189 * 179.97438 * 3 2 1
5 5 H 1.09000 * 109.47117 * 174.99593 * 4 3 2
6 6 N 1.46896 * 109.47252 * 294.99800 * 4 3 2
7 7 C 1.46900 * 111.00228 * 275.00348 * 6 4 3
8 8 C 1.53000 * 109.47271 * 180.02562 * 7 6 4
9 9 H 1.08995 * 109.47092 * 54.99870 * 8 7 6
10 10 C 1.52997 * 109.46811 * 294.99447 * 8 7 6
11 11 C 1.53003 * 109.46850 * 174.99911 * 8 7 6
12 12 C 1.50704 * 109.46922 * 184.99959 * 11 8 7
13 13 H 1.07998 * 119.99356 * 359.97438 * 12 11 8
14 14 C 1.37869 * 120.00047 * 179.97438 * 12 11 8
15 15 N 1.31516 * 119.99899 * 0.02562 * 14 12 11
16 16 Si 1.86800 * 120.00302 * 179.97438 * 14 12 11
17 17 H 1.48500 * 109.46878 * 59.99621 * 16 14 12
18 18 H 1.48494 * 109.47536 * 179.97438 * 16 14 12
19 19 H 1.48505 * 109.47148 * 300.00327 * 16 14 12
20 20 C 1.50703 * 109.46987 * 55.00239 * 4 3 2
21 21 C 1.38235 * 120.00292 * 99.99885 * 20 4 3
22 22 C 1.38230 * 119.99899 * 179.97438 * 21 20 4
23 23 C 1.38235 * 120.00326 * 359.95697 * 22 21 20
24 24 C 1.38234 * 119.99814 * 359.97438 * 23 22 21
25 25 C 1.38234 * 119.99503 * 279.97178 * 20 4 3
26 26 H 1.08994 * 109.47392 * 180.02562 * 1 2 3
27 27 H 1.09001 * 109.47380 * 300.00335 * 1 2 3
28 28 H 1.08999 * 109.47095 * 59.99886 * 1 2 3
29 29 H 1.08999 * 109.47171 * 59.99483 * 3 2 1
30 30 H 1.09001 * 109.47076 * 299.99985 * 3 2 1
31 31 H 1.00898 * 110.99990 * 38.95536 * 6 4 3
32 32 H 1.09004 * 109.46565 * 300.00090 * 7 6 4
33 33 H 1.09001 * 109.47168 * 59.99547 * 7 6 4
34 34 H 1.08997 * 109.46806 * 180.02562 * 10 8 7
35 35 H 1.08995 * 109.47638 * 300.00089 * 10 8 7
36 36 H 1.09004 * 109.47181 * 60.00562 * 10 8 7
37 37 H 1.09000 * 109.47079 * 304.99259 * 11 8 7
38 38 H 1.08998 * 109.46992 * 64.99811 * 11 8 7
39 39 H 0.96998 * 119.99853 * 179.97438 * 15 14 12
40 40 H 1.08001 * 119.99730 * 359.97438 * 21 20 4
41 41 H 1.08000 * 120.00376 * 179.97438 * 22 21 20
42 42 H 1.08000 * 120.00616 * 179.72578 * 23 22 21
43 43 H 1.08001 * 120.00299 * 179.97438 * 24 23 22
44 44 H 1.07997 * 120.00455 * 0.02562 * 25 20 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5355 1.1846 0.0006
5 1 3.9786 2.1764 -0.0890
6 7 3.9769 0.5627 1.2561
7 6 4.1189 1.5664 2.3194
8 6 4.5796 0.8825 3.6081
9 1 5.4940 0.3216 3.4149
10 6 3.4888 -0.0728 4.0965
11 6 4.8474 1.9413 4.6797
12 6 5.4174 1.2798 5.9080
13 1 5.5727 0.2112 5.9229
14 6 5.7407 2.0390 7.0125
15 7 5.5511 3.3403 6.9944
16 14 6.4466 1.2191 8.5353
17 1 7.7176 0.5356 8.1852
18 1 6.7079 2.2468 9.5748
19 1 5.4761 0.2230 9.0561
20 6 3.9723 0.3324 -1.1629
21 6 4.4477 0.9282 -2.3161
22 6 4.8489 0.1464 -3.3832
23 6 4.7755 -1.2313 -3.2968
24 6 4.3014 -1.8272 -2.1431
25 6 3.8981 -1.0453 -1.0768
26 1 -0.3634 -1.0276 0.0005
27 1 -0.3634 0.5139 0.8899
28 1 -0.3633 0.5138 -0.8900
29 1 1.6886 1.8464 0.8899
30 1 1.6886 1.8464 -0.8900
31 1 3.3465 -0.1737 1.5360
32 1 4.8565 2.3110 2.0198
33 1 3.1589 2.0539 2.4894
34 1 3.8168 -0.5597 5.0148
35 1 2.5744 0.4881 4.2897
36 1 3.2979 -0.8271 3.3331
37 1 5.5593 2.6729 4.2976
38 1 3.9141 2.4422 4.9367
39 1 5.7782 3.8743 7.7717
40 1 4.5057 2.0046 -2.3834
41 1 5.2199 0.6118 -4.2843
42 1 5.0847 -1.8421 -4.1321
43 1 4.2437 -2.9036 -2.0757
44 1 3.5267 -1.5109 -0.1759
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000602547423.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:43:03
Heat of formation + Delta-G solvation = -54.953112 kcal
Electronic energy + Delta-G solvation = -21533.997882 eV
Core-core repulsion = 18449.829689 eV
Total energy + Delta-G solvation = -3084.168193 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 277.178 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-40.58584 -38.88797 -37.98278 -35.84402 -34.21567 -31.90360 -31.54441 -29.53451
-28.64502 -27.17925 -26.62564 -24.71998 -23.86364 -23.08791 -21.34981 -20.66000
-18.56685 -17.87064 -17.32018 -16.98732 -16.82568 -16.52868 -16.06293 -15.85980
-15.57699 -15.06268 -14.71503 -14.40633 -14.14527 -14.09450 -13.90357 -13.56106
-13.33894 -13.17501 -13.04831 -12.78111 -12.74632 -12.58727 -12.32317 -12.21531
-11.97162 -11.73609 -11.69926 -11.50406 -11.06742 -10.93477 -10.62786 -10.51846
-9.67464 -9.51852 -9.27842 -8.16533 -6.25446 0.57845 0.67370 1.40620
1.43376 1.50985 2.42821 2.72210 3.05140 3.16866 3.36110 3.81397
3.99526 4.14307 4.20326 4.27154 4.28906 4.38987 4.41032 4.42807
4.49302 4.51297 4.57694 4.59449 4.76361 4.83772 4.85783 4.87972
4.88770 5.04615 5.21148 5.24877 5.31360 5.39174 5.48157 5.56002
5.68502 5.75344 5.79692 5.84405 5.90674 6.08133 6.21238 6.28410
6.34299 6.50327 6.90137 7.42644 8.95321
Molecular weight = 277.18amu
Principal moments of inertia in cm(-1)
A = 0.022670 B = 0.003521 C = 0.003330
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1234.838409 B = 7950.599008 C = 8406.193705
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.397 6.397
3 C 0.039 3.961
4 C 0.127 3.873
5 H 0.099 0.901
6 N -0.679 5.679
7 C 0.077 3.923
8 C -0.075 4.075
9 H 0.054 0.946
10 C -0.124 4.124
11 C 0.035 3.965
12 C -0.530 4.530
13 H 0.060 0.940
14 C -0.001 4.001
15 N -0.935 5.935
16 Si 0.960 3.040
17 H -0.269 1.269
18 H -0.284 1.284
19 H -0.267 1.267
20 C -0.073 4.073
21 C -0.130 4.130
22 C -0.131 4.131
23 C -0.131 4.131
24 C -0.137 4.137
25 C -0.091 4.091
26 H 0.096 0.904
27 H 0.041 0.959
28 H 0.049 0.951
29 H 0.049 0.951
30 H 0.065 0.935
31 H 0.349 0.651
32 H 0.060 0.940
33 H 0.025 0.975
34 H 0.045 0.955
35 H 0.040 0.960
36 H 0.061 0.939
37 H -0.013 1.013
38 H -0.009 1.009
39 H 0.262 0.738
40 H 0.131 0.869
41 H 0.140 0.860
42 H 0.139 0.861
43 H 0.132 0.868
44 H 0.114 0.886
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.202 -7.213 -21.008 23.678
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 O -0.316 6.316
3 C -0.040 4.040
4 C 0.017 3.983
5 H 0.117 0.883
6 N -0.311 5.311
7 C -0.052 4.052
8 C -0.094 4.094
9 H 0.073 0.927
10 C -0.181 4.181
11 C -0.003 4.003
12 C -0.568 4.568
13 H 0.078 0.922
14 C -0.199 4.199
15 N -0.576 5.576
16 Si 0.785 3.215
17 H -0.194 1.194
18 H -0.210 1.210
19 H -0.192 1.192
20 C -0.074 4.074
21 C -0.149 4.149
22 C -0.149 4.149
23 C -0.149 4.149
24 C -0.155 4.155
25 C -0.109 4.109
26 H 0.115 0.885
27 H 0.060 0.940
28 H 0.067 0.933
29 H 0.067 0.933
30 H 0.084 0.916
31 H 0.170 0.830
32 H 0.079 0.921
33 H 0.044 0.956
34 H 0.064 0.936
35 H 0.059 0.941
36 H 0.080 0.920
37 H 0.006 0.994
38 H 0.009 0.991
39 H 0.071 0.929
40 H 0.149 0.851
41 H 0.158 0.842
42 H 0.157 0.843
43 H 0.149 0.851
44 H 0.132 0.868
Dipole moment (debyes) X Y Z Total
from point charges -7.418 -7.218 -21.061 23.467
hybrid contribution -0.747 0.537 1.385 1.663
sum -8.165 -6.681 -19.676 22.326
Atomic orbital electron populations
1.22870 0.79945 1.03659 1.00365 1.87854 1.20876 1.27416 1.95442
1.23172 0.94457 0.85423 1.00911 1.20636 0.91218 0.97636 0.88831
0.88267 1.60546 1.54897 1.12957 1.02687 1.21895 0.98741 0.93793
0.90724 1.21004 0.98223 0.96806 0.93338 0.92722 1.21618 0.97491
0.98524 1.00492 1.18982 0.94479 0.93685 0.93126 1.21617 1.41355
0.94252 0.99594 0.92218 1.25930 0.96346 0.95397 1.02188 1.70090
1.49933 1.06359 1.31210 0.85578 0.79176 0.78153 0.78623 1.19382
1.20977 1.19196 1.19690 0.99053 0.94287 0.94364 1.21227 0.99716
1.00569 0.93341 1.21341 1.00321 0.94132 0.99065 1.21407 0.99862
0.95309 0.98328 1.21394 0.99766 1.00515 0.93835 1.20960 0.98086
0.93466 0.98385 0.88518 0.94024 0.93277 0.93301 0.91644 0.83036
0.92129 0.95641 0.93628 0.94116 0.91991 0.99430 0.99099 0.92944
0.85128 0.84209 0.84318 0.85056 0.86809
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.47 11.01 113.37 1.25 1.72 16
2 O -0.40 -9.09 8.50 -148.98 -1.27 -10.35 16
3 C 0.04 0.86 5.60 71.98 0.40 1.26 16
4 C 0.13 3.17 2.65 44.17 0.12 3.28 16
5 H 0.10 2.38 7.66 -2.39 -0.02 2.36 16
6 N -0.68 -20.15 5.70 -495.45 -2.82 -22.98 16
7 C 0.08 2.69 4.94 86.30 0.43 3.12 16
8 C -0.07 -3.12 2.55 -10.79 -0.03 -3.15 16
9 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16
10 C -0.12 -4.65 8.77 71.98 0.63 -4.02 16
11 C 0.03 1.85 4.45 29.85 0.13 1.98 16
12 C -0.53 -30.33 8.41 25.60 0.22 -30.12 16
13 H 0.06 3.29 7.06 -2.91 -0.02 3.27 16
14 C 0.00 -0.08 5.46 84.65 0.46 0.38 16
15 N -0.94 -57.52 13.29 21.44 0.28 -57.24 16
16 Si 0.96 44.90 29.54 68.60 2.03 46.92 16
17 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16
18 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16
19 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16
20 C -0.07 -1.81 4.83 -19.87 -0.10 -1.91 16
21 C -0.13 -2.81 9.67 22.27 0.22 -2.59 16
22 C -0.13 -2.49 10.05 22.27 0.22 -2.27 16
23 C -0.13 -2.50 10.05 22.27 0.22 -2.28 16
24 C -0.14 -2.96 10.05 22.27 0.22 -2.74 16
25 C -0.09 -2.27 8.32 22.27 0.19 -2.09 16
26 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16
27 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16
28 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16
29 H 0.05 1.13 7.35 -2.39 -0.02 1.11 16
30 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16
31 H 0.35 10.24 5.54 -89.70 -0.50 9.74 16
32 H 0.06 2.18 8.06 -2.38 -0.02 2.16 16
33 H 0.03 0.87 7.36 -2.39 -0.02 0.85 16
34 H 0.04 1.85 6.95 -2.39 -0.02 1.83 16
35 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16
36 H 0.06 1.95 6.68 -2.39 -0.02 1.94 16
37 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16
38 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16
39 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16
40 H 0.13 2.33 8.04 -2.91 -0.02 2.31 16
41 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16
42 H 0.14 1.91 8.06 -2.91 -0.02 1.88 16
43 H 0.13 2.32 8.06 -2.91 -0.02 2.29 16
44 H 0.11 2.99 7.00 -2.91 -0.02 2.97 16
Total: -1.00 -65.75 354.45 3.26 -62.49
By element:
Atomic # 1 Polarization: 20.10 SS G_CDS: 0.46 Total: 20.55 kcal
Atomic # 6 Polarization: -43.98 SS G_CDS: 4.58 Total: -39.40 kcal
Atomic # 7 Polarization: -77.67 SS G_CDS: -2.54 Total: -80.21 kcal
Atomic # 8 Polarization: -9.09 SS G_CDS: -1.27 Total: -10.35 kcal
Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal
Total: -65.75 3.26 -62.49 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602547423.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.536 kcal
(2) G-P(sol) polarization free energy of solvation -65.751 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.215 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.262 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.489 kcal
(6) G-S(sol) free energy of system = (1) + (5) -54.953 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds