Wall clock time and date at job start Mon Mar 30 2020 01:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42902 * 114.00117 * 2 1 4 4 C 1.52994 * 109.47117 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47294 * 185.00232 * 4 3 2 6 6 N 1.46891 * 109.47709 * 64.99526 * 4 3 2 7 7 C 1.46900 * 110.99776 * 84.99849 * 6 4 3 8 8 C 1.53006 * 109.47303 * 180.02562 * 7 6 4 9 9 H 1.08998 * 109.46505 * 304.99837 * 8 7 6 10 10 C 1.52997 * 109.47127 * 64.99966 * 8 7 6 11 11 C 1.52992 * 109.47223 * 185.00471 * 8 7 6 12 12 C 1.50697 * 109.47463 * 174.99857 * 11 8 7 13 13 H 1.08007 * 119.99713 * 0.02562 * 12 11 8 14 14 C 1.37879 * 120.00558 * 179.97438 * 12 11 8 15 15 N 1.31513 * 119.99931 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99729 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47193 * 89.99912 * 16 14 12 18 18 H 1.48494 * 109.47218 * 209.99865 * 16 14 12 19 19 H 1.48504 * 109.47120 * 330.00170 * 16 14 12 20 20 C 1.50707 * 109.46892 * 304.99693 * 4 3 2 21 21 C 1.38236 * 120.00056 * 79.73074 * 20 4 3 22 22 C 1.38230 * 119.99937 * 179.80884 * 21 20 4 23 23 C 1.38239 * 119.99979 * 0.40135 * 22 21 20 24 24 C 1.38232 * 120.00128 * 359.84769 * 23 22 21 25 25 C 1.38235 * 120.00053 * 359.96415 * 24 23 22 26 26 H 1.08991 * 109.46895 * 300.00455 * 1 2 3 27 27 H 1.08999 * 109.46587 * 60.00328 * 1 2 3 28 28 H 1.08996 * 109.47082 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46920 * 59.99218 * 3 2 1 30 30 H 1.09006 * 109.47025 * 300.00137 * 3 2 1 31 31 H 1.00905 * 110.99802 * 321.05094 * 6 4 3 32 32 H 1.09007 * 109.47006 * 60.00373 * 7 6 4 33 33 H 1.08996 * 109.47541 * 300.00579 * 7 6 4 34 34 H 1.09002 * 109.47153 * 180.02562 * 10 8 7 35 35 H 1.09001 * 109.46832 * 60.00321 * 10 8 7 36 36 H 1.09004 * 109.47261 * 300.00303 * 10 8 7 37 37 H 1.09002 * 109.46906 * 294.99936 * 11 8 7 38 38 H 1.09006 * 109.47717 * 54.99311 * 11 8 7 39 39 H 0.97002 * 119.99493 * 180.02562 * 15 14 12 40 40 H 1.07996 * 119.99510 * 359.97438 * 21 20 4 41 41 H 1.08001 * 120.00172 * 180.22226 * 22 21 20 42 42 H 1.07997 * 119.99684 * 179.83601 * 23 22 21 43 43 H 1.08001 * 120.00028 * 179.97438 * 24 23 22 44 44 H 1.07998 * 120.00074 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9786 2.1765 0.0890 6 7 3.9770 0.5626 -1.2560 7 6 4.1191 1.5663 -2.3192 8 6 4.5786 0.8821 -3.6084 9 1 5.4928 0.3207 -3.4156 10 6 3.4871 -0.0726 -4.0961 11 6 4.8466 1.9407 -4.6799 12 6 5.4156 1.2790 -5.9085 13 1 5.5702 0.2102 -5.9237 14 6 5.7379 2.0379 -7.0137 15 7 6.2340 1.4603 -8.0860 16 14 5.4685 3.8862 -6.9883 17 1 6.6913 4.5577 -6.4794 18 1 5.1782 4.3630 -8.3643 19 1 4.3218 4.2071 -6.1009 20 6 3.9723 0.3324 1.1630 21 6 3.8924 -1.0451 1.0793 22 6 4.2968 -1.8270 2.1451 23 6 4.7734 -1.2310 3.2978 24 6 4.8485 0.1466 3.3835 25 6 4.4477 0.9283 2.3162 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6886 1.8464 0.8899 30 1 1.6887 1.8464 -0.8900 31 1 3.3466 -0.1739 -1.5359 32 1 4.8567 2.3109 -2.0198 33 1 3.1592 2.0538 -2.4894 34 1 3.8147 -0.5603 -5.0143 35 1 2.5729 0.4889 -4.2888 36 1 3.2962 -0.8268 -3.3326 37 1 3.9135 2.4422 -4.9365 38 1 5.5591 2.6721 -4.2982 39 1 6.4610 1.9942 -8.8633 40 1 3.5165 -1.5105 0.1801 41 1 4.2377 -2.9033 2.0784 42 1 5.0868 -1.8418 4.1315 43 1 5.2204 0.6121 4.2843 44 1 4.5060 2.0047 2.3833 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602547424.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:07 Heat of formation + Delta-G solvation = -33.961024 kcal Electronic energy + Delta-G solvation = -21586.719253 eV Core-core repulsion = 18503.461345 eV Total energy + Delta-G solvation = -3083.257908 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.70097 -38.01905 -36.73568 -34.45260 -32.30511 -30.93229 -30.59835 -28.61526 -27.33829 -26.28382 -25.25447 -23.37289 -22.56758 -21.74850 -20.42838 -19.03923 -17.18432 -16.67297 -16.46978 -16.04484 -15.90915 -15.16800 -15.02256 -14.56236 -14.04303 -13.95006 -13.58198 -13.23358 -13.14536 -12.99628 -12.58296 -12.30871 -12.25643 -11.97731 -11.84746 -11.70386 -11.54784 -10.99716 -10.92011 -10.88979 -10.68900 -10.36769 -9.91978 -9.82687 -9.64479 -9.43889 -9.03906 -8.83738 -8.64135 -8.49584 -8.17538 -5.99853 -3.96553 1.41380 1.51080 3.32559 3.39821 3.42953 3.53587 3.88528 4.41693 4.48449 4.69199 4.86967 4.95741 5.02496 5.13382 5.18148 5.19004 5.25429 5.33424 5.35537 5.37118 5.49459 5.59065 5.67055 5.71882 5.74665 5.98648 6.02263 6.13921 6.16324 6.39590 6.48579 6.50665 6.58992 6.68566 6.81790 6.93184 7.00333 7.06961 7.09538 7.29190 7.33105 7.51847 7.65550 7.85126 8.59994 9.06247 9.63086 11.13666 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022081 B = 0.003706 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.725834 B = 7553.805872 C = 7927.880560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.380 6.380 3 C 0.034 3.966 4 C 0.127 3.873 5 H 0.096 0.904 6 N -0.677 5.677 7 C 0.061 3.939 8 C -0.075 4.075 9 H 0.072 0.928 10 C -0.135 4.135 11 C -0.008 4.008 12 C -0.512 4.512 13 H 0.074 0.926 14 C 0.064 3.936 15 N -0.905 5.905 16 Si 0.878 3.122 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.267 1.267 20 C -0.059 4.059 21 C -0.073 4.073 22 C -0.127 4.127 23 C -0.127 4.127 24 C -0.127 4.127 25 C -0.120 4.120 26 H 0.038 0.962 27 H 0.040 0.960 28 H 0.085 0.915 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.350 0.650 32 H 0.067 0.933 33 H 0.022 0.978 34 H 0.067 0.933 35 H 0.039 0.961 36 H 0.035 0.965 37 H 0.013 0.987 38 H 0.010 0.990 39 H 0.262 0.738 40 H 0.124 0.876 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.713 -1.869 22.545 24.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.299 6.299 3 C -0.045 4.045 4 C 0.017 3.983 5 H 0.114 0.886 6 N -0.309 5.309 7 C -0.068 4.068 8 C -0.094 4.094 9 H 0.090 0.910 10 C -0.192 4.192 11 C -0.046 4.046 12 C -0.550 4.550 13 H 0.092 0.908 14 C -0.136 4.136 15 N -0.545 5.545 16 Si 0.706 3.294 17 H -0.204 1.204 18 H -0.215 1.215 19 H -0.192 1.192 20 C -0.060 4.060 21 C -0.091 4.091 22 C -0.145 4.145 23 C -0.145 4.145 24 C -0.146 4.146 25 C -0.139 4.139 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.104 0.896 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.171 0.829 32 H 0.085 0.915 33 H 0.041 0.959 34 H 0.086 0.914 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.031 0.969 38 H 0.029 0.971 39 H 0.071 0.929 40 H 0.142 0.858 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.879 -1.986 22.509 24.279 hybrid contribution -1.239 1.509 -0.333 1.981 sum -10.118 -0.477 22.176 24.380 Atomic orbital electron populations 1.22721 0.81217 1.02707 0.99759 1.87881 1.19433 1.27256 1.95323 1.23265 0.95393 0.85356 1.00482 1.20600 0.90179 0.97584 0.89966 0.88571 1.60604 1.54408 1.13378 1.02531 1.22232 0.98940 0.93950 0.91673 1.21017 0.98519 0.97462 0.92379 0.90963 1.21737 0.98024 0.98468 1.00973 1.19598 0.96125 0.94463 0.94403 1.21141 1.41148 0.96126 0.96575 0.90806 1.25031 0.94792 0.98307 0.95487 1.69918 1.44398 1.35804 1.04357 0.86805 0.79059 0.86456 0.77079 1.20368 1.21536 1.19174 1.19627 0.98194 0.94247 0.93934 1.20925 0.96985 0.93109 0.98091 1.21151 0.99863 0.99705 0.93814 1.21073 1.00593 0.94864 0.98004 1.20996 1.01076 0.93968 0.98509 1.20970 0.99957 0.99504 0.93438 0.94365 0.94142 0.89613 0.93079 0.92815 0.82919 0.91455 0.95932 0.91369 0.94208 0.94616 0.96884 0.97140 0.92858 0.85779 0.86467 0.86686 0.86578 0.86587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.38 -4.40 8.48 -35.23 -0.30 -4.70 16 3 C 0.03 0.37 5.60 37.15 0.21 0.58 16 4 C 0.13 1.56 2.65 -68.87 -0.18 1.37 16 5 H 0.10 1.11 7.66 -51.93 -0.40 0.71 16 6 N -0.68 -9.76 5.71 -107.95 -0.62 -10.38 16 7 C 0.06 0.98 4.94 -3.82 -0.02 0.96 16 8 C -0.07 -1.48 2.54 -90.62 -0.23 -1.71 16 9 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 10 C -0.13 -2.50 8.77 37.16 0.33 -2.17 16 11 C -0.01 -0.19 3.52 -27.89 -0.10 -0.29 16 12 C -0.51 -14.52 8.96 -34.44 -0.31 -14.83 16 13 H 0.07 2.25 7.30 -52.48 -0.38 1.87 16 14 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 15 N -0.91 -28.11 13.96 55.43 0.77 -27.33 16 16 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 20 C -0.06 -0.74 4.83 -104.62 -0.51 -1.24 16 21 C -0.07 -0.92 8.31 -39.59 -0.33 -1.25 16 22 C -0.13 -1.44 10.05 -39.58 -0.40 -1.84 16 23 C -0.13 -1.33 10.05 -39.58 -0.40 -1.73 16 24 C -0.13 -1.33 10.05 -39.58 -0.40 -1.73 16 25 C -0.12 -1.35 9.67 -39.58 -0.38 -1.73 16 26 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.60 7.35 -51.93 -0.38 0.22 16 31 H 0.35 5.07 5.54 -39.29 -0.22 4.85 16 32 H 0.07 1.09 8.06 -51.93 -0.42 0.67 16 33 H 0.02 0.35 7.36 -51.93 -0.38 -0.03 16 34 H 0.07 1.42 6.95 -51.93 -0.36 1.06 16 35 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.03 0.57 6.68 -51.93 -0.35 0.22 16 37 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 38 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 39 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 40 H 0.12 1.61 6.99 -52.49 -0.37 1.24 16 41 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 42 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 43 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 44 H 0.12 1.09 8.04 -52.49 -0.42 0.67 16 LS Contribution 350.82 15.07 5.29 5.29 Total: -1.00 -31.07 350.82 -8.64 -39.71 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -7.42 Total: 2.62 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: -1.70 Total: -22.42 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.16 Total: -37.71 kcal Atomic # 8 Polarization: -4.40 SS G_CDS: -0.30 Total: -4.70 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.07 -8.64 -39.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602547424.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.750 kcal (2) G-P(sol) polarization free energy of solvation -31.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds