Wall clock time and date at job start Mon Mar 30 2020 01:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09009 * 109.47540 * 2 1 4 4 C 1.53007 * 109.47111 * 240.00374 * 2 1 3 5 5 C 1.50704 * 109.47017 * 64.99534 * 4 2 1 6 6 H 1.07995 * 120.00178 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99801 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99841 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99737 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47076 * 90.00420 * 9 7 5 11 11 H 1.48502 * 109.46925 * 210.00073 * 9 7 5 12 12 H 1.48488 * 109.47347 * 330.00157 * 9 7 5 13 13 C 1.52995 * 109.47396 * 120.00402 * 2 1 3 14 14 N 1.46903 * 109.47200 * 294.99790 * 13 2 1 15 15 C 1.46891 * 111.00138 * 179.97438 * 14 13 2 16 16 H 1.09001 * 109.47145 * 34.99817 * 15 14 13 17 17 C 1.52996 * 109.47342 * 274.99723 * 15 14 13 18 18 C 1.53001 * 109.47467 * 154.99818 * 15 14 13 19 19 C 1.50696 * 109.47226 * 295.00183 * 18 15 14 20 20 C 1.38290 * 119.97271 * 89.99254 * 19 18 15 21 21 C 1.38251 * 120.11123 * 180.02562 * 20 19 18 22 22 C 1.38163 * 120.05527 * 0.24024 * 21 20 19 23 23 C 1.38717 * 119.94349 * 359.50941 * 22 21 20 24 24 O 1.35896 * 120.05449 * 180.21612 * 23 22 21 25 25 C 1.38121 * 119.97404 * 270.01892 * 19 18 15 26 26 H 1.09001 * 109.47448 * 59.99392 * 1 2 3 27 27 H 1.08996 * 109.47360 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47014 * 300.00112 * 1 2 3 29 29 H 1.08993 * 109.47193 * 184.99992 * 4 2 1 30 30 H 1.09003 * 109.46633 * 305.00361 * 4 2 1 31 31 H 0.97008 * 119.99846 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.47214 * 174.99620 * 13 2 1 33 33 H 1.08996 * 109.47082 * 54.99873 * 13 2 1 34 34 H 1.00894 * 110.99827 * 56.04424 * 14 13 2 35 35 H 1.08998 * 109.47464 * 180.02562 * 17 15 14 36 36 H 1.08996 * 109.47171 * 300.00613 * 17 15 14 37 37 H 1.09009 * 109.46883 * 60.00245 * 17 15 14 38 38 H 1.08995 * 109.47424 * 174.99611 * 18 15 14 39 39 H 1.09009 * 109.46806 * 54.99783 * 18 15 14 40 40 H 1.07998 * 119.94582 * 0.02562 * 20 19 18 41 41 H 1.08002 * 119.96904 * 179.97438 * 21 20 19 42 42 H 1.07998 * 120.03052 * 179.74049 * 22 21 20 43 43 H 0.96699 * 114.00130 * 270.29520 * 24 23 22 44 44 H 1.07997 * 120.02529 * 359.97438 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6411 0.0572 -2.4767 6 1 1.0804 0.9746 -2.3757 7 6 1.9921 -0.4021 -3.7284 8 7 2.6745 -1.5196 -3.8513 9 14 1.4984 0.5631 -5.2496 10 1 2.5645 1.5419 -5.5825 11 1 1.3106 -0.3707 -6.3889 12 1 0.2279 1.2853 -4.9869 13 6 2.0400 -0.7213 1.2491 14 7 1.6514 0.0373 2.4456 15 6 2.1248 -0.6273 3.6671 16 1 3.0883 -1.0990 3.4740 17 6 1.1122 -1.6919 4.0936 18 6 2.2781 0.4072 4.7839 19 6 3.3634 1.3860 4.4165 20 6 3.0490 2.5337 3.7119 21 6 4.0425 3.4334 3.3729 22 6 5.3531 3.1853 3.7331 23 6 5.6702 2.0374 4.4444 24 8 6.9579 1.7933 4.8036 25 6 4.6713 1.1359 4.7832 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.1262 -0.7994 -1.2057 30 1 1.6052 -1.7197 -1.2953 31 1 2.9211 -1.8429 -4.7321 32 1 3.1262 -0.7996 1.2054 33 1 1.6054 -1.7198 1.2950 34 1 0.6529 0.1792 2.4753 35 1 1.4632 -2.1848 5.0002 36 1 0.1487 -1.2203 4.2867 37 1 1.0030 -2.4290 3.2980 38 1 2.5433 -0.0976 5.7128 39 1 1.3370 0.9410 4.9164 40 1 2.0258 2.7275 3.4261 41 1 3.7945 4.3288 2.8222 42 1 6.1294 3.8863 3.4644 43 1 7.4612 1.2924 4.1472 44 1 4.9163 0.2395 5.3334 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602548256.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:03 Heat of formation + Delta-G solvation = -48.307256 kcal Electronic energy + Delta-G solvation = -21401.807553 eV Core-core repulsion = 18317.927546 eV Total energy + Delta-G solvation = -3083.880007 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.77143 -37.88470 -36.60906 -34.96026 -32.61021 -31.56641 -29.78431 -29.44235 -26.79340 -26.53341 -25.14889 -22.55269 -22.51622 -21.64547 -20.55410 -18.94253 -17.99716 -16.43859 -16.31201 -15.83089 -15.35023 -15.02472 -14.83785 -14.39757 -14.18366 -13.77787 -13.59020 -13.25223 -12.70453 -12.53069 -12.42170 -12.26896 -12.05687 -11.76102 -11.63146 -11.49546 -11.38539 -11.17070 -10.94882 -10.85308 -10.72446 -10.38366 -10.31903 -10.16982 -9.70918 -9.14042 -8.96142 -8.75885 -8.43491 -8.32271 -8.05109 -5.97052 -3.98070 1.37173 1.41743 3.33202 3.39512 3.42550 3.69109 4.24025 4.40316 4.51025 4.73970 4.95412 5.04621 5.14506 5.28428 5.31038 5.38875 5.42853 5.49990 5.63817 5.70301 5.72736 5.81384 5.84054 5.95076 5.97668 6.04811 6.12838 6.15200 6.31502 6.46536 6.48471 6.53085 6.58339 6.72997 6.90558 6.97794 7.12263 7.19221 7.41969 7.63969 7.69619 7.72251 7.87636 8.03408 8.47384 9.08363 9.65307 11.14494 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016253 B = 0.003981 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.347637 B = 7031.403055 C = 7935.660805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.083 4.083 3 H 0.064 0.936 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.067 3.933 14 N -0.680 5.680 15 C 0.086 3.914 16 H 0.076 0.924 17 C -0.182 4.182 18 C -0.070 4.070 19 C -0.047 4.047 20 C -0.094 4.094 21 C -0.105 4.105 22 C -0.153 4.153 23 C 0.096 3.904 24 O -0.505 6.505 25 C -0.148 4.148 26 H 0.061 0.939 27 H 0.040 0.960 28 H 0.031 0.969 29 H 0.014 0.986 30 H 0.013 0.987 31 H 0.259 0.741 32 H 0.064 0.936 33 H 0.022 0.978 34 H 0.337 0.663 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.126 0.874 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.388 0.612 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.080 4.251 18.572 19.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.102 4.102 3 H 0.083 0.917 4 C -0.009 4.009 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.061 4.061 14 N -0.311 5.311 15 C -0.024 4.024 16 H 0.094 0.906 17 C -0.241 4.241 18 C -0.108 4.108 19 C -0.047 4.047 20 C -0.112 4.112 21 C -0.123 4.123 22 C -0.171 4.171 23 C 0.052 3.948 24 O -0.315 6.315 25 C -0.167 4.167 26 H 0.080 0.920 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.032 0.968 30 H 0.032 0.968 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.040 0.960 34 H 0.156 0.844 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.144 0.856 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.243 0.757 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.541 4.867 18.910 19.587 hybrid contribution -0.568 -0.663 -1.428 1.674 sum 0.973 4.204 17.482 18.007 Atomic orbital electron populations 1.21729 0.96761 1.00338 1.00184 1.21200 0.94741 1.00044 0.94191 0.91734 1.19103 0.96054 0.95327 0.90443 1.21238 1.34588 1.08200 0.90998 0.92603 1.25015 0.95360 0.95067 0.99076 1.69968 1.39200 1.21201 1.23336 0.86641 0.78926 0.79830 0.82890 1.20728 1.21336 1.19917 1.22116 1.00021 0.94447 0.89560 1.60669 1.19380 1.49983 1.01088 1.21521 0.98361 0.92095 0.90449 0.90599 1.22511 0.99912 0.99922 1.01757 1.20661 0.97098 0.95613 0.97398 1.19564 0.93456 0.95060 0.96666 1.21027 0.99775 0.93393 0.97017 1.21041 0.92384 0.99630 0.99231 1.21347 0.97421 0.98355 0.99997 1.18401 0.84048 0.94500 0.97824 1.84788 1.21234 1.77755 1.47688 1.21232 0.92836 0.99579 1.03055 0.91980 0.94129 0.94988 0.96788 0.96849 0.93128 0.91796 0.95961 0.84427 0.92391 0.92505 0.92346 0.91138 0.90859 0.85618 0.85882 0.86027 0.75651 0.86106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 8.77 37.15 0.33 -2.10 16 2 C -0.08 -1.66 2.54 -90.62 -0.23 -1.89 16 3 H 0.06 1.37 8.14 -51.92 -0.42 0.94 16 4 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 5 C -0.51 -14.30 8.41 -34.44 -0.29 -14.59 16 6 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.01 13.29 55.43 0.74 -26.28 16 9 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.07 1.13 4.94 -3.82 -0.02 1.11 16 14 N -0.68 -9.23 5.63 -106.74 -0.60 -9.83 16 15 C 0.09 0.99 2.58 -67.72 -0.17 0.81 16 16 H 0.08 0.96 7.80 -51.93 -0.41 0.55 16 17 C -0.18 -1.83 9.16 37.16 0.34 -1.49 16 18 C -0.07 -0.71 5.03 -27.88 -0.14 -0.85 16 19 C -0.05 -0.57 4.95 -104.65 -0.52 -1.08 16 20 C -0.09 -1.16 9.30 -39.56 -0.37 -1.53 16 21 C -0.10 -1.27 10.04 -39.60 -0.40 -1.67 16 22 C -0.15 -1.87 9.99 -39.43 -0.39 -2.26 16 23 C 0.10 1.20 6.71 -39.21 -0.26 0.94 16 24 O -0.50 -5.67 13.50 -19.41 -0.26 -5.93 16 25 C -0.15 -1.80 9.64 -39.43 -0.38 -2.18 16 26 H 0.06 1.24 6.95 -51.93 -0.36 0.88 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.03 0.48 6.68 -51.93 -0.35 0.13 16 29 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.06 1.16 8.06 -51.93 -0.42 0.74 16 33 H 0.02 0.38 7.43 -51.93 -0.39 -0.01 16 34 H 0.34 4.34 6.72 -39.29 -0.26 4.08 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 37 H 0.06 0.66 7.45 -51.92 -0.39 0.27 16 38 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 39 H 0.07 0.70 8.09 -51.92 -0.42 0.28 16 40 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 41 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 42 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 43 H 0.39 2.70 9.06 45.56 0.41 3.11 16 44 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 358.00 15.07 5.40 5.40 Total: -1.00 -31.10 358.00 -9.21 -40.31 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -6.73 Total: 4.35 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: -2.73 Total: -24.69 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: 0.14 Total: -36.11 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: -0.26 Total: -5.93 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.10 -9.21 -40.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602548256.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.998 kcal (2) G-P(sol) polarization free energy of solvation -31.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds