Wall clock time and date at job start Mon Mar 30 2020 01:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09009 * 109.47540 * 2 1 4 4 C 1.53007 * 109.47111 * 240.00374 * 2 1 3 5 5 C 1.50704 * 109.47017 * 64.99534 * 4 2 1 6 6 H 1.07995 * 120.00178 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99801 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99841 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99737 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47076 * 90.00420 * 9 7 5 11 11 H 1.48502 * 109.46925 * 210.00073 * 9 7 5 12 12 H 1.48488 * 109.47347 * 330.00157 * 9 7 5 13 13 C 1.52995 * 109.47396 * 120.00402 * 2 1 3 14 14 N 1.46903 * 109.47200 * 294.99790 * 13 2 1 15 15 C 1.46891 * 111.00138 * 179.97438 * 14 13 2 16 16 H 1.09001 * 109.47145 * 34.99817 * 15 14 13 17 17 C 1.52996 * 109.47342 * 274.99723 * 15 14 13 18 18 C 1.53001 * 109.47467 * 154.99818 * 15 14 13 19 19 C 1.50696 * 109.47226 * 295.00183 * 18 15 14 20 20 C 1.38290 * 119.97271 * 89.99254 * 19 18 15 21 21 C 1.38251 * 120.11123 * 180.02562 * 20 19 18 22 22 C 1.38163 * 120.05527 * 0.24024 * 21 20 19 23 23 C 1.38717 * 119.94349 * 359.50941 * 22 21 20 24 24 O 1.35896 * 120.05449 * 180.21612 * 23 22 21 25 25 C 1.38121 * 119.97404 * 270.01892 * 19 18 15 26 26 H 1.09001 * 109.47448 * 59.99392 * 1 2 3 27 27 H 1.08996 * 109.47360 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47014 * 300.00112 * 1 2 3 29 29 H 1.08993 * 109.47193 * 184.99992 * 4 2 1 30 30 H 1.09003 * 109.46633 * 305.00361 * 4 2 1 31 31 H 0.97008 * 119.99846 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.47214 * 174.99620 * 13 2 1 33 33 H 1.08996 * 109.47082 * 54.99873 * 13 2 1 34 34 H 1.00894 * 110.99827 * 56.04424 * 14 13 2 35 35 H 1.08998 * 109.47464 * 180.02562 * 17 15 14 36 36 H 1.08996 * 109.47171 * 300.00613 * 17 15 14 37 37 H 1.09009 * 109.46883 * 60.00245 * 17 15 14 38 38 H 1.08995 * 109.47424 * 174.99611 * 18 15 14 39 39 H 1.09009 * 109.46806 * 54.99783 * 18 15 14 40 40 H 1.07998 * 119.94582 * 0.02562 * 20 19 18 41 41 H 1.08002 * 119.96904 * 179.97438 * 21 20 19 42 42 H 1.07998 * 120.03052 * 179.74049 * 22 21 20 43 43 H 0.96699 * 114.00130 * 270.29520 * 24 23 22 44 44 H 1.07997 * 120.02529 * 359.97438 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6411 0.0572 -2.4767 6 1 1.0804 0.9746 -2.3757 7 6 1.9921 -0.4021 -3.7284 8 7 2.6745 -1.5196 -3.8513 9 14 1.4984 0.5631 -5.2496 10 1 2.5645 1.5419 -5.5825 11 1 1.3106 -0.3707 -6.3889 12 1 0.2279 1.2853 -4.9869 13 6 2.0400 -0.7213 1.2491 14 7 1.6514 0.0373 2.4456 15 6 2.1248 -0.6273 3.6671 16 1 3.0883 -1.0990 3.4740 17 6 1.1122 -1.6919 4.0936 18 6 2.2781 0.4072 4.7839 19 6 3.3634 1.3860 4.4165 20 6 3.0490 2.5337 3.7119 21 6 4.0425 3.4334 3.3729 22 6 5.3531 3.1853 3.7331 23 6 5.6702 2.0374 4.4444 24 8 6.9579 1.7933 4.8036 25 6 4.6713 1.1359 4.7832 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.1262 -0.7994 -1.2057 30 1 1.6052 -1.7197 -1.2953 31 1 2.9211 -1.8429 -4.7321 32 1 3.1262 -0.7996 1.2054 33 1 1.6054 -1.7198 1.2950 34 1 0.6529 0.1792 2.4753 35 1 1.4632 -2.1848 5.0002 36 1 0.1487 -1.2203 4.2867 37 1 1.0030 -2.4290 3.2980 38 1 2.5433 -0.0976 5.7128 39 1 1.3370 0.9410 4.9164 40 1 2.0258 2.7275 3.4261 41 1 3.7945 4.3288 2.8222 42 1 6.1294 3.8863 3.4644 43 1 7.4612 1.2924 4.1472 44 1 4.9163 0.2395 5.3334 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602548256.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:03 Heat of formation + Delta-G solvation = -67.651415 kcal Electronic energy + Delta-G solvation = -21402.646379 eV Core-core repulsion = 18317.927546 eV Total energy + Delta-G solvation = -3084.718833 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.66440 -39.00222 -37.66829 -36.38660 -34.45474 -32.77763 -30.84683 -30.48689 -28.65680 -27.37857 -26.69549 -24.34035 -23.42347 -22.64347 -21.51502 -20.57359 -18.90187 -18.50570 -17.21646 -16.83798 -16.56847 -16.46605 -16.03700 -15.77389 -15.43445 -14.79293 -14.68738 -14.40474 -14.27836 -14.08506 -13.46803 -13.34910 -13.22876 -13.08691 -12.98519 -12.79648 -12.60228 -12.54360 -12.36025 -12.23385 -12.11875 -11.84726 -11.75476 -11.47180 -11.25140 -11.04735 -10.88275 -10.52882 -9.69237 -9.35608 -9.16507 -8.16905 -6.25912 0.46059 0.50490 1.40389 1.41262 1.52145 2.42416 2.80362 3.16721 3.30437 3.42990 3.87273 4.07248 4.15333 4.24125 4.27377 4.32812 4.44386 4.46923 4.51059 4.58650 4.65768 4.76588 4.79892 4.85752 4.95679 4.99260 5.07725 5.09109 5.14662 5.25825 5.29101 5.33088 5.42815 5.51219 5.55603 5.57816 5.61882 5.81385 5.83804 5.91114 6.05607 6.19517 6.33787 6.64974 6.87741 6.90401 7.42467 8.95223 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016253 B = 0.003981 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.347637 B = 7031.403055 C = 7935.660805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.073 4.073 3 H 0.055 0.945 4 C 0.033 3.967 5 C -0.527 4.527 6 H 0.061 0.939 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.960 3.040 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.262 1.262 13 C 0.084 3.916 14 N -0.676 5.676 15 C 0.088 3.912 16 H 0.061 0.939 17 C -0.176 4.176 18 C -0.063 4.063 19 C -0.053 4.053 20 C -0.108 4.108 21 C -0.114 4.114 22 C -0.167 4.167 23 C 0.086 3.914 24 O -0.513 6.513 25 C -0.160 4.160 26 H 0.042 0.958 27 H 0.038 0.962 28 H 0.069 0.931 29 H -0.018 1.018 30 H -0.012 1.012 31 H 0.261 0.739 32 H 0.046 0.954 33 H 0.021 0.979 34 H 0.345 0.655 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.043 0.957 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.132 0.868 41 H 0.136 0.864 42 H 0.131 0.869 43 H 0.405 0.595 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.119 5.113 19.591 20.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.092 4.092 3 H 0.073 0.927 4 C -0.004 4.004 5 C -0.565 4.565 6 H 0.079 0.921 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.785 3.215 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.186 1.186 13 C -0.046 4.046 14 N -0.308 5.308 15 C -0.022 4.022 16 H 0.080 0.920 17 C -0.235 4.235 18 C -0.100 4.100 19 C -0.053 4.053 20 C -0.126 4.126 21 C -0.132 4.132 22 C -0.186 4.186 23 C 0.042 3.958 24 O -0.326 6.326 25 C -0.178 4.178 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.088 0.912 29 H 0.000 1.000 30 H 0.006 0.994 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.039 0.961 34 H 0.165 0.835 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.062 0.938 38 H 0.107 0.893 39 H 0.103 0.897 40 H 0.149 0.851 41 H 0.154 0.846 42 H 0.149 0.851 43 H 0.263 0.737 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.339 5.733 19.944 20.755 hybrid contribution -0.126 -0.951 -1.705 1.957 sum 0.213 4.782 18.239 18.857 Atomic orbital electron populations 1.21628 0.94881 1.00543 1.01103 1.20982 0.96193 0.98835 0.93157 0.92687 1.19001 0.93945 0.94556 0.92943 1.21643 1.34353 1.08474 0.92051 0.92072 1.25942 0.95289 0.96056 1.02634 1.70107 1.40455 1.22956 1.24213 0.85525 0.79052 0.78387 0.78580 1.20025 1.20960 1.18603 1.21746 0.98741 0.94281 0.89805 1.60580 1.19964 1.49634 1.00648 1.21537 0.98068 0.92838 0.89758 0.92032 1.22441 1.00032 0.99118 1.01932 1.20649 0.97085 0.94948 0.97356 1.19801 0.93917 0.95290 0.96322 1.21213 1.00139 0.93797 0.97439 1.21287 0.92444 1.00221 0.99296 1.21555 0.97907 0.98744 1.00366 1.18598 0.84628 0.94762 0.97824 1.84734 1.20996 1.78207 1.48661 1.21440 0.93003 1.00022 1.03372 0.93870 0.94253 0.91189 0.99957 0.99358 0.93004 0.93559 0.96108 0.83541 0.90694 0.91236 0.93823 0.89251 0.89657 0.85058 0.84619 0.85101 0.73676 0.85036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.38 8.77 71.98 0.63 -3.75 16 2 C -0.07 -2.93 2.54 -10.80 -0.03 -2.96 16 3 H 0.05 2.32 8.14 -2.38 -0.02 2.30 16 4 C 0.03 1.75 4.45 29.85 0.13 1.88 16 5 C -0.53 -29.87 8.41 25.60 0.22 -29.65 16 6 H 0.06 3.33 7.06 -2.91 -0.02 3.31 16 7 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 8 N -0.94 -57.59 13.29 21.45 0.28 -57.31 16 9 Si 0.96 44.56 29.54 68.60 2.03 46.59 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 12 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 13 C 0.08 2.81 4.94 86.30 0.43 3.24 16 14 N -0.68 -17.24 5.63 -491.60 -2.77 -20.00 16 15 C 0.09 1.84 2.58 44.92 0.12 1.96 16 16 H 0.06 1.49 7.80 -2.39 -0.02 1.47 16 17 C -0.18 -3.09 9.16 71.98 0.66 -2.43 16 18 C -0.06 -1.11 5.03 29.85 0.15 -0.96 16 19 C -0.05 -1.19 4.95 -19.88 -0.10 -1.29 16 20 C -0.11 -2.53 9.30 22.29 0.21 -2.32 16 21 C -0.11 -2.69 10.04 22.26 0.22 -2.47 16 22 C -0.17 -4.01 9.99 22.37 0.22 -3.79 16 23 C 0.09 2.09 6.71 22.51 0.15 2.24 16 24 O -0.51 -11.13 13.50 -92.38 -1.25 -12.38 16 25 C -0.16 -3.70 9.64 22.36 0.22 -3.49 16 26 H 0.04 1.67 6.95 -2.39 -0.02 1.66 16 27 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.07 1.93 6.68 -2.38 -0.02 1.91 16 29 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 30 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 31 H 0.26 15.13 8.31 -92.70 -0.77 14.36 16 32 H 0.05 1.71 8.06 -2.39 -0.02 1.69 16 33 H 0.02 0.70 7.43 -2.39 -0.02 0.69 16 34 H 0.34 7.92 6.72 -89.70 -0.60 7.31 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 1.06 8.13 -2.39 -0.02 1.04 16 37 H 0.04 0.90 7.45 -2.38 -0.02 0.88 16 38 H 0.09 1.28 8.08 -2.39 -0.02 1.26 16 39 H 0.08 1.34 8.09 -2.38 -0.02 1.32 16 40 H 0.13 2.85 8.06 -2.91 -0.02 2.83 16 41 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 42 H 0.13 2.75 8.06 -2.91 -0.02 2.73 16 43 H 0.41 5.35 9.06 -74.06 -0.67 4.68 16 44 H 0.13 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -67.61 358.00 1.69 -65.92 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -0.30 Total: 20.61 kcal Atomic # 6 Polarization: -47.13 SS G_CDS: 3.69 Total: -43.44 kcal Atomic # 7 Polarization: -74.83 SS G_CDS: -2.48 Total: -77.31 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: -1.25 Total: -12.38 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -67.61 1.69 -65.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602548256.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.727 kcal (2) G-P(sol) polarization free energy of solvation -67.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds