Wall clock time and date at job start Mon Mar 30 2020 01:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47356 * 2 1 4 4 C 1.52998 * 109.47083 * 239.99708 * 2 1 3 5 5 C 1.50699 * 109.47013 * 175.00145 * 4 2 1 6 6 C 1.38290 * 119.97382 * 90.00572 * 5 4 2 7 7 C 1.38245 * 120.11372 * 180.02562 * 6 5 4 8 8 C 1.38174 * 120.05443 * 359.94932 * 7 6 5 9 9 C 1.38710 * 119.94442 * 0.02562 * 8 7 6 10 10 O 1.35891 * 120.05595 * 180.02562 * 9 8 7 11 11 C 1.38122 * 119.97176 * 269.72452 * 5 4 2 12 12 N 1.46904 * 109.47308 * 119.99885 * 2 1 3 13 13 C 1.46899 * 111.00029 * 275.00154 * 12 2 1 14 14 C 1.52997 * 109.47254 * 179.97438 * 13 12 2 15 15 H 1.09004 * 109.47346 * 305.00031 * 14 13 12 16 16 C 1.53004 * 109.47236 * 64.99771 * 14 13 12 17 17 C 1.52997 * 109.47504 * 184.99955 * 14 13 12 18 18 C 1.50691 * 109.47514 * 175.00045 * 17 14 13 19 19 H 1.08007 * 120.00409 * 0.02562 * 18 17 14 20 20 C 1.37880 * 120.00516 * 180.02562 * 18 17 14 21 21 N 1.31513 * 119.99418 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00271 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47150 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46915 * 120.00220 * 22 20 18 25 25 H 1.48504 * 109.46896 * 239.99725 * 22 20 18 26 26 H 1.08999 * 109.47404 * 60.00168 * 1 2 3 27 27 H 1.09004 * 109.47538 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46997 * 300.00072 * 1 2 3 29 29 H 1.08996 * 109.47522 * 295.00055 * 4 2 1 30 30 H 1.08999 * 109.46971 * 55.00363 * 4 2 1 31 31 H 1.07998 * 119.94332 * 359.96935 * 6 5 4 32 32 H 1.08001 * 119.97529 * 179.97438 * 7 6 5 33 33 H 1.07998 * 120.02866 * 180.02562 * 8 7 6 34 34 H 0.96703 * 114.00265 * 90.00094 * 10 9 8 35 35 H 1.08003 * 120.02973 * 0.02562 * 11 5 4 36 36 H 1.00908 * 110.99583 * 38.95067 * 12 2 1 37 37 H 1.09002 * 109.47043 * 299.99792 * 13 12 2 38 38 H 1.09001 * 109.47354 * 59.99854 * 13 12 2 39 39 H 1.09001 * 109.46917 * 300.00567 * 16 14 13 40 40 H 1.09004 * 109.46741 * 59.99889 * 16 14 13 41 41 H 1.09000 * 109.47403 * 180.02562 * 16 14 13 42 42 H 1.09003 * 109.46810 * 294.99909 * 17 14 13 43 43 H 1.08998 * 109.47247 * 54.99778 * 17 14 13 44 44 H 0.97005 * 119.99823 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5418 -0.6150 -1.3126 6 6 4.3288 -1.5824 -0.7150 7 6 5.7068 -1.4874 -0.7709 8 6 6.3013 -0.4257 -1.4255 9 6 5.5142 0.5457 -2.0262 10 8 6.0964 1.5906 -2.6710 11 6 4.1312 0.4455 -1.9727 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5950 -0.5331 3.5745 15 1 1.9691 -1.4081 3.7501 16 6 4.0386 -0.9790 3.3329 17 6 2.5428 0.3850 4.7972 18 6 2.9306 -0.3941 6.0274 19 1 3.1890 -1.4396 5.9455 20 6 2.9556 0.2276 7.2579 21 7 2.6414 1.5008 7.3577 22 14 3.4356 -0.7384 8.7829 23 1 3.7419 -2.1412 8.4042 24 1 4.6351 -0.1204 9.4031 25 1 2.3121 -0.7212 9.7538 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.7516 -1.7715 -1.2056 30 1 1.6053 -0.2618 -2.1369 31 1 3.8660 -2.4130 -0.2028 32 1 6.3193 -2.2440 -0.3030 33 1 7.3779 -0.3521 -1.4693 34 1 6.2657 1.4289 -3.6093 35 1 3.5162 1.1986 -2.4429 36 1 1.4494 -1.4979 1.4101 37 1 2.7588 1.0462 2.1182 38 1 1.0870 0.6163 2.5526 39 1 4.0758 -1.6331 2.4617 40 1 4.6645 -0.1040 3.1573 41 1 4.4036 -1.5178 4.2073 42 1 3.2364 1.2144 4.6588 43 1 1.5314 0.7734 4.9170 44 1 2.6593 1.9383 8.2233 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602548258.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:09 Heat of formation + Delta-G solvation = -48.012886 kcal Electronic energy + Delta-G solvation = -21476.064795 eV Core-core repulsion = 18392.197553 eV Total energy + Delta-G solvation = -3083.867242 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.79367 -37.84638 -36.58516 -34.94472 -32.58421 -31.58107 -29.81621 -29.43414 -26.69110 -26.54096 -24.95053 -22.55373 -22.51366 -21.67737 -20.61705 -18.94799 -18.04154 -16.34302 -16.32213 -15.83121 -15.29054 -14.95218 -14.69454 -14.39536 -14.30429 -13.91865 -13.46109 -13.29617 -12.72534 -12.43872 -12.37860 -12.24208 -12.07780 -11.62761 -11.52557 -11.42388 -11.31698 -11.24049 -10.86128 -10.82785 -10.71399 -10.40293 -10.25218 -10.18195 -9.65456 -9.09858 -8.91518 -8.77616 -8.45227 -8.30203 -8.00764 -5.94764 -3.95627 1.35145 1.39692 3.33720 3.41234 3.45292 3.69824 4.15657 4.40891 4.52739 4.75481 4.93987 5.03934 5.15106 5.29111 5.32381 5.41145 5.42015 5.48910 5.62366 5.71094 5.73240 5.80837 5.90307 5.96461 5.99148 6.11970 6.15855 6.24514 6.44577 6.49596 6.50963 6.62253 6.71221 6.75344 6.89223 7.08059 7.24061 7.25657 7.43910 7.61269 7.71234 7.75557 7.90220 8.06020 8.50174 9.11124 9.67627 11.16868 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018985 B = 0.003803 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.478477 B = 7360.714459 C = 8091.827315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.086 3.914 3 H 0.076 0.924 4 C -0.069 4.069 5 C -0.047 4.047 6 C -0.093 4.093 7 C -0.105 4.105 8 C -0.153 4.153 9 C 0.096 3.904 10 O -0.501 6.501 11 C -0.149 4.149 12 N -0.677 5.677 13 C 0.066 3.934 14 C -0.081 4.081 15 H 0.052 0.948 16 C -0.120 4.120 17 C 0.027 3.973 18 C -0.510 4.510 19 H 0.056 0.944 20 C 0.055 3.945 21 N -0.897 5.897 22 Si 0.889 3.111 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.285 1.285 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.126 0.874 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.384 0.616 35 H 0.121 0.879 36 H 0.335 0.665 37 H 0.064 0.936 38 H 0.023 0.977 39 H 0.042 0.958 40 H 0.038 0.962 41 H 0.051 0.949 42 H 0.015 0.985 43 H 0.011 0.989 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.917 -5.062 -22.177 22.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.024 4.024 3 H 0.094 0.906 4 C -0.107 4.107 5 C -0.047 4.047 6 C -0.111 4.111 7 C -0.123 4.123 8 C -0.172 4.172 9 C 0.052 3.948 10 O -0.311 6.311 11 C -0.168 4.168 12 N -0.307 5.307 13 C -0.062 4.062 14 C -0.100 4.100 15 H 0.070 0.930 16 C -0.177 4.177 17 C -0.011 4.011 18 C -0.549 4.549 19 H 0.075 0.925 20 C -0.146 4.146 21 N -0.537 5.537 22 Si 0.717 3.283 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.211 1.211 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.239 0.761 35 H 0.139 0.861 36 H 0.153 0.847 37 H 0.082 0.918 38 H 0.041 0.959 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.034 0.966 43 H 0.030 0.970 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.543 -4.563 -21.656 22.186 hybrid contribution -0.635 -0.333 0.814 1.085 sum 0.908 -4.895 -20.843 21.429 Atomic orbital electron populations 1.22509 0.97355 1.02023 1.02197 1.21518 0.91999 0.98170 0.90739 0.90595 1.20656 0.91090 1.01561 0.97409 1.19572 0.95556 0.93793 0.95772 1.21022 0.93030 0.99310 0.97751 1.21036 0.95142 0.97699 0.98403 1.21341 0.99975 0.94532 1.01306 1.18414 0.90577 0.87994 0.97795 1.84858 1.81854 1.37756 1.26597 1.21248 0.93923 0.98801 1.02789 1.60627 1.56367 1.09843 1.03896 1.22138 0.98708 0.95225 0.90156 1.21176 0.96230 0.98537 0.94033 0.92983 1.21561 0.96289 1.00073 0.99800 1.19120 0.96824 0.94376 0.90754 1.21279 1.45030 0.96539 0.92044 0.92550 1.25025 0.95655 0.94871 0.99041 1.69982 1.49380 1.10032 1.24307 0.86586 0.78095 0.80278 0.83356 1.19752 1.21098 1.21140 0.92447 0.92479 0.92310 0.90846 0.91208 0.85599 0.85915 0.86051 0.76103 0.86115 0.84684 0.91795 0.95909 0.93916 0.94323 0.93010 0.96638 0.97034 0.93197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.86 9.16 37.15 0.34 -1.52 16 2 C 0.09 1.00 2.58 -67.72 -0.17 0.83 16 3 H 0.08 1.00 7.80 -51.93 -0.40 0.60 16 4 C -0.07 -0.69 5.03 -27.88 -0.14 -0.83 16 5 C -0.05 -0.54 4.95 -104.65 -0.52 -1.06 16 6 C -0.09 -1.11 9.30 -39.56 -0.37 -1.48 16 7 C -0.10 -1.22 10.04 -39.60 -0.40 -1.62 16 8 C -0.15 -1.81 9.99 -39.43 -0.39 -2.21 16 9 C 0.10 1.17 6.71 -39.21 -0.26 0.91 16 10 O -0.50 -5.49 13.50 -19.40 -0.26 -5.75 16 11 C -0.15 -1.76 9.64 -39.43 -0.38 -2.14 16 12 N -0.68 -9.26 5.08 -106.73 -0.54 -9.81 16 13 C 0.07 1.15 4.87 -3.83 -0.02 1.13 16 14 C -0.08 -1.66 2.48 -90.62 -0.22 -1.88 16 15 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 16 C -0.12 -2.37 8.89 37.16 0.33 -2.04 16 17 C 0.03 0.70 4.45 -27.89 -0.12 0.57 16 18 C -0.51 -14.49 8.41 -34.44 -0.29 -14.78 16 19 H 0.06 1.56 7.06 -52.48 -0.37 1.19 16 20 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 21 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 22 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 23 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 24 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 28 H 0.06 0.68 7.45 -51.93 -0.39 0.30 16 29 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 30 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 31 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 33 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.38 2.15 9.06 45.56 0.41 2.57 16 35 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 36 H 0.34 4.33 8.47 -39.29 -0.33 4.00 16 37 H 0.06 1.19 8.06 -51.93 -0.42 0.77 16 38 H 0.02 0.40 7.44 -51.93 -0.39 0.02 16 39 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16 40 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.05 1.09 6.95 -51.93 -0.36 0.73 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 360.26 15.07 5.43 5.43 Total: -1.00 -31.93 360.26 -9.23 -41.16 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -6.85 Total: 3.32 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: -2.72 Total: -24.64 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.19 Total: -36.45 kcal Atomic # 8 Polarization: -5.49 SS G_CDS: -0.26 Total: -5.75 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.93 -9.23 -41.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602548258.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.851 kcal (2) G-P(sol) polarization free energy of solvation -31.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds