Wall clock time and date at job start Mon Mar 30 2020 01:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47356 * 2 1 4 4 C 1.52998 * 109.47083 * 239.99708 * 2 1 3 5 5 C 1.50699 * 109.47013 * 175.00145 * 4 2 1 6 6 C 1.38290 * 119.97382 * 90.00572 * 5 4 2 7 7 C 1.38245 * 120.11372 * 180.02562 * 6 5 4 8 8 C 1.38174 * 120.05443 * 359.94932 * 7 6 5 9 9 C 1.38710 * 119.94442 * 0.02562 * 8 7 6 10 10 O 1.35891 * 120.05595 * 180.02562 * 9 8 7 11 11 C 1.38122 * 119.97176 * 269.72452 * 5 4 2 12 12 N 1.46904 * 109.47308 * 119.99885 * 2 1 3 13 13 C 1.46899 * 111.00029 * 275.00154 * 12 2 1 14 14 C 1.52997 * 109.47254 * 179.97438 * 13 12 2 15 15 H 1.09004 * 109.47346 * 305.00031 * 14 13 12 16 16 C 1.53004 * 109.47236 * 64.99771 * 14 13 12 17 17 C 1.52997 * 109.47504 * 184.99955 * 14 13 12 18 18 C 1.50691 * 109.47514 * 175.00045 * 17 14 13 19 19 H 1.08007 * 120.00409 * 0.02562 * 18 17 14 20 20 C 1.37880 * 120.00516 * 180.02562 * 18 17 14 21 21 N 1.31513 * 119.99418 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00271 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47150 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46915 * 120.00220 * 22 20 18 25 25 H 1.48504 * 109.46896 * 239.99725 * 22 20 18 26 26 H 1.08999 * 109.47404 * 60.00168 * 1 2 3 27 27 H 1.09004 * 109.47538 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46997 * 300.00072 * 1 2 3 29 29 H 1.08996 * 109.47522 * 295.00055 * 4 2 1 30 30 H 1.08999 * 109.46971 * 55.00363 * 4 2 1 31 31 H 1.07998 * 119.94332 * 359.96935 * 6 5 4 32 32 H 1.08001 * 119.97529 * 179.97438 * 7 6 5 33 33 H 1.07998 * 120.02866 * 180.02562 * 8 7 6 34 34 H 0.96703 * 114.00265 * 90.00094 * 10 9 8 35 35 H 1.08003 * 120.02973 * 0.02562 * 11 5 4 36 36 H 1.00908 * 110.99583 * 38.95067 * 12 2 1 37 37 H 1.09002 * 109.47043 * 299.99792 * 13 12 2 38 38 H 1.09001 * 109.47354 * 59.99854 * 13 12 2 39 39 H 1.09001 * 109.46917 * 300.00567 * 16 14 13 40 40 H 1.09004 * 109.46741 * 59.99889 * 16 14 13 41 41 H 1.09000 * 109.47403 * 180.02562 * 16 14 13 42 42 H 1.09003 * 109.46810 * 294.99909 * 17 14 13 43 43 H 1.08998 * 109.47247 * 54.99778 * 17 14 13 44 44 H 0.97005 * 119.99823 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5418 -0.6150 -1.3126 6 6 4.3288 -1.5824 -0.7150 7 6 5.7068 -1.4874 -0.7709 8 6 6.3013 -0.4257 -1.4255 9 6 5.5142 0.5457 -2.0262 10 8 6.0964 1.5906 -2.6710 11 6 4.1312 0.4455 -1.9727 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5950 -0.5331 3.5745 15 1 1.9691 -1.4081 3.7501 16 6 4.0386 -0.9790 3.3329 17 6 2.5428 0.3850 4.7972 18 6 2.9306 -0.3941 6.0274 19 1 3.1890 -1.4396 5.9455 20 6 2.9556 0.2276 7.2579 21 7 2.6414 1.5008 7.3577 22 14 3.4356 -0.7384 8.7829 23 1 3.7419 -2.1412 8.4042 24 1 4.6351 -0.1204 9.4031 25 1 2.3121 -0.7212 9.7538 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.7516 -1.7715 -1.2056 30 1 1.6053 -0.2618 -2.1369 31 1 3.8660 -2.4130 -0.2028 32 1 6.3193 -2.2440 -0.3030 33 1 7.3779 -0.3521 -1.4693 34 1 6.2657 1.4289 -3.6093 35 1 3.5162 1.1986 -2.4429 36 1 1.4494 -1.4979 1.4101 37 1 2.7588 1.0462 2.1182 38 1 1.0870 0.6163 2.5526 39 1 4.0758 -1.6331 2.4617 40 1 4.6645 -0.1040 3.1573 41 1 4.4036 -1.5178 4.2073 42 1 3.2364 1.2144 4.6588 43 1 1.5314 0.7734 4.9170 44 1 2.6593 1.9383 8.2233 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602548258.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:08 Heat of formation + Delta-G solvation = -68.021158 kcal Electronic energy + Delta-G solvation = -21476.932419 eV Core-core repulsion = 18392.197553 eV Total energy + Delta-G solvation = -3084.734866 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.65314 -38.95435 -37.63875 -36.41580 -34.44520 -32.79415 -30.85321 -30.48014 -28.64759 -27.37753 -26.54264 -24.36050 -23.40751 -22.64233 -21.63065 -20.56925 -18.90575 -18.48711 -17.18691 -16.81893 -16.51465 -16.27176 -15.99864 -15.83990 -15.54318 -14.91332 -14.60167 -14.41247 -14.24116 -14.10614 -13.46498 -13.30388 -13.13914 -13.08200 -12.97490 -12.77625 -12.57358 -12.44768 -12.32613 -12.25103 -12.14434 -11.90369 -11.74765 -11.47929 -11.23717 -11.07163 -10.85813 -10.54208 -9.67375 -9.34021 -9.15343 -8.17439 -6.26664 0.48273 0.52143 1.39581 1.40206 1.53314 2.42035 2.84793 3.16095 3.30756 3.38922 3.89668 4.08710 4.13113 4.22277 4.28214 4.37758 4.43878 4.49008 4.55149 4.60808 4.66879 4.81040 4.84646 4.89907 4.98215 5.00494 5.05287 5.11988 5.17277 5.28968 5.31555 5.32925 5.49173 5.51867 5.57090 5.58016 5.64292 5.82646 5.84260 5.89699 6.08724 6.17365 6.32833 6.64480 6.89948 6.93174 7.41801 8.95019 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018985 B = 0.003803 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.478477 B = 7360.714459 C = 8091.827315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.088 3.912 3 H 0.058 0.942 4 C -0.061 4.061 5 C -0.053 4.053 6 C -0.106 4.106 7 C -0.113 4.113 8 C -0.167 4.167 9 C 0.087 3.913 10 O -0.514 6.514 11 C -0.161 4.161 12 N -0.671 5.671 13 C 0.083 3.917 14 C -0.071 4.071 15 H 0.057 0.943 16 C -0.108 4.108 17 C 0.032 3.968 18 C -0.526 4.526 19 H 0.062 0.938 20 C -0.004 4.004 21 N -0.937 5.937 22 Si 0.961 3.039 23 H -0.260 1.260 24 H -0.281 1.281 25 H -0.279 1.279 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.039 0.961 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.132 0.868 32 H 0.136 0.864 33 H 0.131 0.869 34 H 0.406 0.594 35 H 0.130 0.870 36 H 0.344 0.656 37 H 0.047 0.953 38 H 0.016 0.984 39 H 0.071 0.929 40 H 0.024 0.976 41 H 0.035 0.965 42 H -0.017 1.017 43 H -0.015 1.015 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.754 -6.797 -23.126 24.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.022 4.022 3 H 0.076 0.924 4 C -0.099 4.099 5 C -0.053 4.053 6 C -0.124 4.124 7 C -0.131 4.131 8 C -0.186 4.186 9 C 0.043 3.957 10 O -0.327 6.327 11 C -0.180 4.180 12 N -0.302 5.302 13 C -0.046 4.046 14 C -0.090 4.090 15 H 0.076 0.924 16 C -0.165 4.165 17 C -0.006 4.006 18 C -0.564 4.564 19 H 0.081 0.919 20 C -0.201 4.201 21 N -0.578 5.578 22 Si 0.786 3.214 23 H -0.184 1.184 24 H -0.207 1.207 25 H -0.205 1.205 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.059 0.941 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.150 0.850 32 H 0.154 0.846 33 H 0.149 0.851 34 H 0.264 0.736 35 H 0.148 0.852 36 H 0.163 0.837 37 H 0.065 0.935 38 H 0.034 0.966 39 H 0.090 0.910 40 H 0.043 0.957 41 H 0.054 0.946 42 H 0.002 0.998 43 H 0.003 0.997 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.379 -6.314 -22.644 23.548 hybrid contribution -0.568 0.264 1.035 1.210 sum 0.811 -6.050 -21.609 22.455 Atomic orbital electron populations 1.22437 0.95972 1.02899 1.02174 1.21537 0.93049 0.97279 0.90353 0.92395 1.20634 0.89991 1.02309 0.96976 1.19790 0.96494 0.93579 0.95441 1.21198 0.93277 0.99743 0.98175 1.21278 0.95486 0.97996 0.98310 1.21546 1.00636 0.94792 1.01597 1.18606 0.90975 0.88140 0.98011 1.84791 1.81781 1.37676 1.28478 1.21443 0.94068 0.99278 1.03190 1.60542 1.57199 1.09412 1.03046 1.21755 0.97638 0.94900 0.90320 1.20984 0.97281 0.97645 0.93094 0.92436 1.21437 0.95072 0.99726 1.00265 1.19019 0.94137 0.94300 0.93130 1.21675 1.44743 0.96979 0.93035 0.91946 1.25976 0.95547 0.95866 1.02701 1.70121 1.50518 1.11873 1.25307 0.85447 0.77798 0.79194 0.78926 1.18375 1.20683 1.20469 0.90697 0.91125 0.94135 0.89498 0.89228 0.84985 0.84573 0.85146 0.73566 0.85209 0.83694 0.93468 0.96598 0.91012 0.95683 0.94555 0.99814 0.99705 0.93004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.22 9.16 71.98 0.66 -2.57 16 2 C 0.09 1.88 2.58 44.91 0.12 2.00 16 3 H 0.06 1.48 7.80 -2.39 -0.02 1.46 16 4 C -0.06 -1.06 5.03 29.85 0.15 -0.91 16 5 C -0.05 -1.14 4.95 -19.88 -0.10 -1.23 16 6 C -0.11 -2.35 9.30 22.28 0.21 -2.14 16 7 C -0.11 -2.49 10.04 22.26 0.22 -2.27 16 8 C -0.17 -3.82 9.99 22.37 0.22 -3.59 16 9 C 0.09 2.03 6.71 22.51 0.15 2.18 16 10 O -0.51 -10.77 13.50 -92.33 -1.25 -12.02 16 11 C -0.16 -3.62 9.64 22.37 0.22 -3.40 16 12 N -0.67 -17.34 5.08 -491.59 -2.50 -19.84 16 13 C 0.08 2.89 4.87 86.30 0.42 3.31 16 14 C -0.07 -2.93 2.48 -10.79 -0.03 -2.96 16 15 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 16 C -0.11 -4.19 8.89 71.98 0.64 -3.55 16 17 C 0.03 1.71 4.45 29.84 0.13 1.84 16 18 C -0.53 -30.21 8.41 25.60 0.22 -30.00 16 19 H 0.06 3.44 7.06 -2.91 -0.02 3.42 16 20 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 21 N -0.94 -58.40 13.29 21.45 0.28 -58.11 16 22 Si 0.96 45.06 29.54 68.60 2.03 47.09 16 23 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 24 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 25 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 26 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.07 1.12 8.13 -2.39 -0.02 1.10 16 28 H 0.04 0.89 7.45 -2.39 -0.02 0.88 16 29 H 0.09 1.30 8.08 -2.39 -0.02 1.28 16 30 H 0.09 1.23 8.08 -2.39 -0.02 1.21 16 31 H 0.13 2.69 8.06 -2.91 -0.02 2.67 16 32 H 0.14 2.52 8.06 -2.91 -0.02 2.49 16 33 H 0.13 2.61 8.06 -2.91 -0.02 2.58 16 34 H 0.41 4.06 9.06 -74.06 -0.67 3.39 16 35 H 0.13 2.56 8.06 -2.91 -0.02 2.54 16 36 H 0.34 8.07 8.47 -89.69 -0.76 7.31 16 37 H 0.05 1.80 8.06 -2.39 -0.02 1.78 16 38 H 0.02 0.57 7.44 -2.39 -0.02 0.55 16 39 H 0.07 2.36 7.75 -2.39 -0.02 2.34 16 40 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.04 1.50 6.95 -2.39 -0.02 1.48 16 42 H -0.02 -0.99 8.14 -2.39 -0.02 -1.00 16 43 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 44 H 0.26 15.28 8.31 -92.70 -0.77 14.51 16 Total: -1.00 -69.35 360.26 1.80 -67.55 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -0.46 Total: 18.38 kcal Atomic # 6 Polarization: -46.74 SS G_CDS: 3.69 Total: -43.05 kcal Atomic # 7 Polarization: -75.73 SS G_CDS: -2.21 Total: -77.95 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: -1.25 Total: -12.02 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -69.35 1.80 -67.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602548258.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.466 kcal (2) G-P(sol) polarization free energy of solvation -69.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds