Wall clock time and date at job start Mon Mar 30 2020 01:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47008 * 2 1 4 4 C 1.53000 * 109.47412 * 120.00322 * 2 1 3 5 5 C 1.50699 * 109.46962 * 294.99977 * 4 2 1 6 6 H 1.08008 * 120.00124 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00039 * 179.97438 * 5 4 2 8 8 N 1.31506 * 119.99768 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99756 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46918 * 90.00901 * 9 7 5 11 11 H 1.48510 * 109.46880 * 210.00336 * 9 7 5 12 12 H 1.48492 * 109.47408 * 330.00146 * 9 7 5 13 13 C 1.53001 * 109.47166 * 240.00479 * 2 1 3 14 14 N 1.46905 * 109.47132 * 64.99473 * 13 2 1 15 15 C 1.46900 * 110.99606 * 185.01798 * 14 13 2 16 16 H 1.08996 * 109.47399 * 321.79199 * 15 14 13 17 17 C 1.52998 * 109.46619 * 201.79527 * 15 14 13 18 18 C 1.52996 * 109.47478 * 65.72279 * 17 15 14 19 19 O 1.42900 * 109.47259 * 174.45180 * 18 17 15 20 20 C 1.50699 * 109.47030 * 81.79699 * 15 14 13 21 21 C 1.38238 * 119.99747 * 219.99715 * 20 15 14 22 22 C 1.38240 * 119.99722 * 180.02562 * 21 20 15 23 23 C 1.38227 * 120.00057 * 359.95543 * 22 21 20 24 24 C 1.38237 * 120.00158 * 359.97438 * 23 22 21 25 25 C 1.38232 * 120.00111 * 39.97399 * 20 15 14 26 26 H 1.09005 * 109.47142 * 299.99297 * 1 2 3 27 27 H 1.08994 * 109.47193 * 59.99788 * 1 2 3 28 28 H 1.08997 * 109.47008 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46818 * 54.99741 * 4 2 1 30 30 H 1.08997 * 109.47024 * 175.00373 * 4 2 1 31 31 H 0.97006 * 119.99843 * 179.97438 * 8 7 5 32 32 H 1.09005 * 109.46532 * 304.99904 * 13 2 1 33 33 H 1.08994 * 109.47406 * 184.99823 * 13 2 1 34 34 H 1.00898 * 110.99707 * 61.06423 * 14 13 2 35 35 H 1.09005 * 109.47288 * 185.72267 * 17 15 14 36 36 H 1.09004 * 109.47296 * 305.71743 * 17 15 14 37 37 H 1.09001 * 109.46837 * 294.45403 * 18 17 15 38 38 H 1.08997 * 109.47369 * 54.44752 * 18 17 15 39 39 H 0.96701 * 113.99995 * 179.97438 * 19 18 17 40 40 H 1.08002 * 119.99946 * 359.97438 * 21 20 15 41 41 H 1.07995 * 119.99624 * 179.97438 * 22 21 20 42 42 H 1.08001 * 120.00134 * 179.72934 * 23 22 21 43 43 H 1.08002 * 119.99883 * 179.97438 * 24 23 22 44 44 H 1.07995 * 120.00240 * 0.02562 * 25 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6414 0.0569 2.4765 6 1 1.0800 0.9741 2.3757 7 6 1.9925 -0.4024 3.7283 8 7 2.6756 -1.5194 3.8511 9 14 1.4989 0.5627 5.2496 10 1 0.1714 0.0953 5.7232 11 1 2.5081 0.3519 6.3185 12 1 1.4251 2.0080 4.9166 13 6 2.0400 -0.7211 -1.2493 14 7 1.6513 0.0376 -2.4457 15 6 2.0203 -0.6851 -3.6702 16 1 2.9842 -1.1735 -3.5274 17 6 2.1165 0.3019 -4.8353 18 6 3.2760 1.2693 -4.5900 19 8 3.4479 2.1071 -5.7348 20 6 0.9716 -1.7231 -3.9763 21 6 1.3477 -2.9695 -4.4411 22 6 0.3856 -3.9215 -4.7224 23 6 -0.9524 -3.6274 -4.5381 24 6 -1.3284 -2.3815 -4.0719 25 6 -0.3665 -1.4290 -3.7919 26 1 -0.3634 0.5137 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6054 -1.7198 1.2950 30 1 3.1263 -0.7994 1.2055 31 1 2.9229 -1.8423 4.7317 32 1 1.6053 -1.7197 -1.2952 33 1 3.1262 -0.7994 -1.2057 34 1 2.0562 0.9617 -2.4351 35 1 2.2899 -0.2455 -5.7619 36 1 1.1853 0.8631 -4.9139 37 1 3.0565 1.8858 -3.7182 38 1 4.1905 0.7032 -4.4135 39 1 4.1675 2.7473 -5.6492 40 1 2.3931 -3.1992 -4.5852 41 1 0.6795 -4.8950 -5.0859 42 1 -1.7043 -4.3696 -4.7620 43 1 -2.3738 -2.1516 -3.9283 44 1 -0.6603 -0.4553 -3.4289 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602550397.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:39 Heat of formation + Delta-G solvation = -49.684702 kcal Electronic energy + Delta-G solvation = -21485.123895 eV Core-core repulsion = 18401.184158 eV Total energy + Delta-G solvation = -3083.939737 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.57736 -37.61043 -36.57459 -34.77001 -32.43344 -30.83905 -30.54503 -30.31408 -26.82114 -25.70377 -24.50572 -22.60865 -22.27544 -22.05786 -20.22987 -19.02736 -17.68074 -16.69582 -16.35896 -15.89188 -15.36160 -15.13884 -14.56007 -14.49108 -14.20687 -14.02564 -13.66332 -13.30307 -13.01794 -12.71399 -12.58347 -12.25229 -11.87151 -11.73212 -11.45415 -11.36065 -11.30013 -10.95947 -10.82417 -10.80420 -10.71014 -10.27663 -10.24931 -10.11621 -9.68528 -9.13562 -8.95321 -8.79665 -8.60574 -8.32044 -8.19686 -5.96747 -3.97798 1.43528 1.53991 3.33406 3.39663 3.42762 3.80228 4.03929 4.33243 4.49851 4.70491 4.87611 5.00629 5.07066 5.12777 5.18270 5.27026 5.38692 5.39757 5.42020 5.61362 5.71322 5.73181 5.85648 5.89600 6.05387 6.09283 6.17314 6.17906 6.43230 6.53625 6.55800 6.63112 6.70231 6.75983 7.03921 7.10881 7.19897 7.21580 7.35621 7.38621 7.61431 7.70790 7.86986 8.03666 8.47643 9.08653 9.65546 11.14813 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015388 B = 0.004125 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.163580 B = 6786.373956 C = 7940.471623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.080 4.080 3 H 0.052 0.948 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.065 3.935 14 N -0.680 5.680 15 C 0.129 3.871 16 H 0.050 0.950 17 C -0.114 4.114 18 C 0.072 3.928 19 O -0.574 6.574 20 C -0.071 4.071 21 C -0.118 4.118 22 C -0.126 4.126 23 C -0.125 4.125 24 C -0.127 4.127 25 C -0.081 4.081 26 H 0.052 0.948 27 H 0.041 0.959 28 H 0.038 0.962 29 H 0.015 0.985 30 H 0.011 0.989 31 H 0.259 0.741 32 H 0.067 0.933 33 H 0.024 0.976 34 H 0.338 0.662 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.050 0.950 38 H 0.044 0.956 39 H 0.379 0.621 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.116 0.884 43 H 0.118 0.882 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.647 0.736 -19.501 19.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.099 4.099 3 H 0.071 0.929 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.063 4.063 14 N -0.313 5.313 15 C 0.019 3.981 16 H 0.068 0.932 17 C -0.152 4.152 18 C -0.006 4.006 19 O -0.380 6.380 20 C -0.071 4.071 21 C -0.137 4.137 22 C -0.144 4.144 23 C -0.143 4.143 24 C -0.145 4.145 25 C -0.099 4.099 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.034 0.966 30 H 0.030 0.970 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.042 0.958 34 H 0.158 0.842 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.226 0.774 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.134 0.866 43 H 0.136 0.864 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.708 0.039 -19.578 19.764 hybrid contribution 1.265 0.718 1.294 1.947 sum -1.442 0.757 -18.284 18.356 Atomic orbital electron populations 1.21567 0.95721 1.00496 1.00027 1.21166 0.96013 0.98789 0.93914 0.92933 1.19115 0.95831 0.95587 0.90481 1.21237 1.34520 1.08277 0.90984 0.92588 1.25017 0.95341 0.95094 0.99077 1.69967 1.39111 1.21281 1.23332 0.86639 0.78233 0.80429 0.82973 1.20717 1.21336 1.19919 1.22181 0.96976 0.97847 0.89317 1.60538 1.64303 1.05561 1.00890 1.20308 0.94898 0.92777 0.90164 0.93213 1.21632 0.98800 0.96497 0.98287 1.22262 0.97942 0.92465 0.87943 1.86460 1.58035 1.52479 1.41010 1.19729 0.94608 0.94013 0.98792 1.21012 0.99282 0.93302 1.00088 1.21022 0.93179 0.99056 1.01189 1.21106 0.96010 0.96940 1.00228 1.21196 0.99507 0.93897 0.99914 1.21058 0.92002 0.99905 0.96912 0.92900 0.93959 0.94254 0.96618 0.97021 0.93126 0.91447 0.95798 0.84211 0.90632 0.90118 0.93190 0.93748 0.77398 0.86586 0.86492 0.86592 0.86362 0.85105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.34 8.89 37.16 0.33 -2.01 16 2 C -0.08 -1.61 2.52 -90.62 -0.23 -1.84 16 3 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.35 8.41 -34.44 -0.29 -14.64 16 6 H 0.06 1.53 7.06 -52.48 -0.37 1.16 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 9 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 13 C 0.07 1.11 4.86 -3.82 -0.02 1.09 16 14 N -0.68 -9.29 4.97 -107.95 -0.54 -9.82 16 15 C 0.13 1.56 2.24 -68.87 -0.15 1.40 16 16 H 0.05 0.61 7.77 -51.93 -0.40 0.21 16 17 C -0.11 -1.23 5.16 -26.73 -0.14 -1.37 16 18 C 0.07 0.70 6.77 37.16 0.25 0.95 16 19 O -0.57 -5.74 13.66 -35.23 -0.48 -6.22 16 20 C -0.07 -0.91 4.49 -104.62 -0.47 -1.38 16 21 C -0.12 -1.44 9.67 -39.58 -0.38 -1.82 16 22 C -0.13 -1.44 10.05 -39.58 -0.40 -1.84 16 23 C -0.12 -1.42 10.05 -39.59 -0.40 -1.82 16 24 C -0.13 -1.54 10.05 -39.58 -0.40 -1.93 16 25 C -0.08 -1.06 9.32 -39.58 -0.37 -1.43 16 26 H 0.05 1.10 6.95 -51.93 -0.36 0.74 16 27 H 0.04 0.72 7.75 -51.93 -0.40 0.32 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.07 1.24 7.79 -51.93 -0.40 0.83 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.34 4.29 6.68 -39.29 -0.26 4.03 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.05 0.47 6.65 -51.93 -0.35 0.12 16 38 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.38 2.09 9.12 45.56 0.42 2.51 16 40 H 0.12 1.23 8.04 -52.49 -0.42 0.81 16 41 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 43 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 44 H 0.13 1.74 7.72 -52.49 -0.41 1.33 16 LS Contribution 358.29 15.07 5.40 5.40 Total: -1.00 -31.47 358.29 -9.53 -41.00 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -6.75 Total: 3.85 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: -2.88 Total: -24.57 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.20 Total: -36.18 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: -0.48 Total: -6.22 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.47 -9.53 -41.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602550397.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.682 kcal (2) G-P(sol) polarization free energy of solvation -31.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds