Wall clock time and date at job start Mon Mar 30 2020 01:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47008 * 2 1 4 4 C 1.53000 * 109.47412 * 120.00322 * 2 1 3 5 5 C 1.50699 * 109.46962 * 294.99977 * 4 2 1 6 6 H 1.08008 * 120.00124 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00039 * 179.97438 * 5 4 2 8 8 N 1.31506 * 119.99768 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99756 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46918 * 90.00901 * 9 7 5 11 11 H 1.48510 * 109.46880 * 210.00336 * 9 7 5 12 12 H 1.48492 * 109.47408 * 330.00146 * 9 7 5 13 13 C 1.53001 * 109.47166 * 240.00479 * 2 1 3 14 14 N 1.46905 * 109.47132 * 64.99473 * 13 2 1 15 15 C 1.46900 * 110.99606 * 185.01798 * 14 13 2 16 16 H 1.08996 * 109.47399 * 321.79199 * 15 14 13 17 17 C 1.52998 * 109.46619 * 201.79527 * 15 14 13 18 18 C 1.52996 * 109.47478 * 65.72279 * 17 15 14 19 19 O 1.42900 * 109.47259 * 174.45180 * 18 17 15 20 20 C 1.50699 * 109.47030 * 81.79699 * 15 14 13 21 21 C 1.38238 * 119.99747 * 219.99715 * 20 15 14 22 22 C 1.38240 * 119.99722 * 180.02562 * 21 20 15 23 23 C 1.38227 * 120.00057 * 359.95543 * 22 21 20 24 24 C 1.38237 * 120.00158 * 359.97438 * 23 22 21 25 25 C 1.38232 * 120.00111 * 39.97399 * 20 15 14 26 26 H 1.09005 * 109.47142 * 299.99297 * 1 2 3 27 27 H 1.08994 * 109.47193 * 59.99788 * 1 2 3 28 28 H 1.08997 * 109.47008 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46818 * 54.99741 * 4 2 1 30 30 H 1.08997 * 109.47024 * 175.00373 * 4 2 1 31 31 H 0.97006 * 119.99843 * 179.97438 * 8 7 5 32 32 H 1.09005 * 109.46532 * 304.99904 * 13 2 1 33 33 H 1.08994 * 109.47406 * 184.99823 * 13 2 1 34 34 H 1.00898 * 110.99707 * 61.06423 * 14 13 2 35 35 H 1.09005 * 109.47288 * 185.72267 * 17 15 14 36 36 H 1.09004 * 109.47296 * 305.71743 * 17 15 14 37 37 H 1.09001 * 109.46837 * 294.45403 * 18 17 15 38 38 H 1.08997 * 109.47369 * 54.44752 * 18 17 15 39 39 H 0.96701 * 113.99995 * 179.97438 * 19 18 17 40 40 H 1.08002 * 119.99946 * 359.97438 * 21 20 15 41 41 H 1.07995 * 119.99624 * 179.97438 * 22 21 20 42 42 H 1.08001 * 120.00134 * 179.72934 * 23 22 21 43 43 H 1.08002 * 119.99883 * 179.97438 * 24 23 22 44 44 H 1.07995 * 120.00240 * 0.02562 * 25 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6414 0.0569 2.4765 6 1 1.0800 0.9741 2.3757 7 6 1.9925 -0.4024 3.7283 8 7 2.6756 -1.5194 3.8511 9 14 1.4989 0.5627 5.2496 10 1 0.1714 0.0953 5.7232 11 1 2.5081 0.3519 6.3185 12 1 1.4251 2.0080 4.9166 13 6 2.0400 -0.7211 -1.2493 14 7 1.6513 0.0376 -2.4457 15 6 2.0203 -0.6851 -3.6702 16 1 2.9842 -1.1735 -3.5274 17 6 2.1165 0.3019 -4.8353 18 6 3.2760 1.2693 -4.5900 19 8 3.4479 2.1071 -5.7348 20 6 0.9716 -1.7231 -3.9763 21 6 1.3477 -2.9695 -4.4411 22 6 0.3856 -3.9215 -4.7224 23 6 -0.9524 -3.6274 -4.5381 24 6 -1.3284 -2.3815 -4.0719 25 6 -0.3665 -1.4290 -3.7919 26 1 -0.3634 0.5137 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6054 -1.7198 1.2950 30 1 3.1263 -0.7994 1.2055 31 1 2.9229 -1.8423 4.7317 32 1 1.6053 -1.7197 -1.2952 33 1 3.1262 -0.7994 -1.2057 34 1 2.0562 0.9617 -2.4351 35 1 2.2899 -0.2455 -5.7619 36 1 1.1853 0.8631 -4.9139 37 1 3.0565 1.8858 -3.7182 38 1 4.1905 0.7032 -4.4135 39 1 4.1675 2.7473 -5.6492 40 1 2.3931 -3.1992 -4.5852 41 1 0.6795 -4.8950 -5.0859 42 1 -1.7043 -4.3696 -4.7620 43 1 -2.3738 -2.1516 -3.9283 44 1 -0.6603 -0.4553 -3.4289 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602550397.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:39 Heat of formation + Delta-G solvation = -69.498615 kcal Electronic energy + Delta-G solvation = -21485.983091 eV Core-core repulsion = 18401.184158 eV Total energy + Delta-G solvation = -3084.798933 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.53123 -38.58321 -37.72190 -36.17863 -34.36714 -31.97921 -31.62464 -31.22757 -28.77136 -26.96245 -25.84006 -24.21220 -23.37332 -22.92386 -21.25551 -20.62828 -18.55897 -18.40668 -17.58296 -16.96917 -16.52595 -16.32885 -16.05118 -15.60464 -15.55955 -15.07310 -14.82711 -14.49716 -14.24662 -14.06310 -13.76060 -13.61683 -13.34120 -13.13733 -12.82426 -12.76359 -12.65013 -12.42470 -12.24028 -12.17882 -12.00980 -11.78771 -11.63459 -11.46819 -11.07381 -10.92682 -10.85445 -10.52982 -9.71665 -9.54185 -9.36853 -8.16836 -6.25871 0.51935 0.61862 1.40557 1.41490 1.52331 2.42451 2.92018 3.12601 3.16835 3.37438 3.79585 4.01757 4.15010 4.17350 4.24997 4.29091 4.33168 4.37672 4.41512 4.52673 4.56299 4.61382 4.74141 4.81816 4.88446 4.92795 5.03385 5.05122 5.17760 5.20450 5.26538 5.31010 5.48404 5.52089 5.56879 5.64809 5.71898 5.74676 5.83180 5.90063 6.11545 6.21630 6.32126 6.51127 6.86630 6.90339 7.42508 8.95310 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015388 B = 0.004125 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.163580 B = 6786.373956 C = 7940.471623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.071 4.071 3 H 0.057 0.943 4 C 0.033 3.967 5 C -0.527 4.527 6 H 0.062 0.938 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.960 3.040 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.262 1.262 13 C 0.083 3.917 14 N -0.674 5.674 15 C 0.135 3.865 16 H 0.051 0.949 17 C -0.105 4.105 18 C 0.073 3.927 19 O -0.591 6.591 20 C -0.086 4.086 21 C -0.132 4.132 22 C -0.132 4.132 23 C -0.131 4.131 24 C -0.137 4.137 25 C -0.098 4.098 26 H 0.036 0.964 27 H 0.068 0.932 28 H 0.028 0.972 29 H -0.015 1.015 30 H -0.014 1.014 31 H 0.261 0.739 32 H 0.052 0.948 33 H 0.020 0.980 34 H 0.347 0.653 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.398 0.602 40 H 0.128 0.872 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.133 0.867 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.138 1.578 -20.237 20.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.090 4.090 3 H 0.075 0.925 4 C -0.005 4.005 5 C -0.565 4.565 6 H 0.080 0.920 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.785 3.215 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.186 1.186 13 C -0.046 4.046 14 N -0.307 5.307 15 C 0.025 3.975 16 H 0.068 0.932 17 C -0.143 4.143 18 C -0.005 4.005 19 O -0.399 6.399 20 C -0.086 4.086 21 C -0.150 4.150 22 C -0.150 4.150 23 C -0.149 4.149 24 C -0.155 4.155 25 C -0.116 4.116 26 H 0.055 0.945 27 H 0.087 0.913 28 H 0.047 0.953 29 H 0.003 0.997 30 H 0.005 0.995 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.039 0.961 34 H 0.168 0.832 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.248 0.752 40 H 0.146 0.854 41 H 0.157 0.843 42 H 0.156 0.844 43 H 0.151 0.849 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.194 0.907 -20.334 20.603 hybrid contribution 1.426 0.419 1.461 2.084 sum -1.768 1.326 -18.872 19.001 Atomic orbital electron populations 1.21451 0.94821 0.99961 1.00471 1.20975 0.96596 0.98463 0.92941 0.92480 1.19005 0.94060 0.94517 0.92890 1.21641 1.34292 1.08575 0.92032 0.92032 1.25943 0.95261 0.96079 1.02634 1.70105 1.40366 1.23023 1.24219 0.85521 0.77939 0.79374 0.78677 1.20031 1.20956 1.18619 1.21799 0.96397 0.96993 0.89435 1.60409 1.64337 1.05719 1.00255 1.20280 0.94709 0.92894 0.89632 0.93155 1.21514 0.99043 0.96283 0.97491 1.22216 0.97720 0.92456 0.88059 1.86409 1.59259 1.53123 1.41133 1.19877 0.94747 0.94610 0.99393 1.21261 1.00256 0.93282 1.00200 1.21360 0.93181 0.99850 1.00591 1.21435 0.96688 0.97166 0.99590 1.21457 1.00177 0.94118 0.99777 1.21126 0.92486 1.00104 0.97867 0.94487 0.91293 0.95267 0.99651 0.99542 0.92997 0.92918 0.96133 0.83238 0.90667 0.90794 0.92713 0.93058 0.75216 0.85432 0.84347 0.84366 0.84938 0.85674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.20 8.89 71.98 0.64 -3.56 16 2 C -0.07 -2.86 2.52 -10.79 -0.03 -2.89 16 3 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 4 C 0.03 1.74 4.45 29.85 0.13 1.87 16 5 C -0.53 -29.86 8.41 25.60 0.22 -29.64 16 6 H 0.06 3.35 7.06 -2.91 -0.02 3.33 16 7 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 8 N -0.94 -57.58 13.29 21.45 0.28 -57.29 16 9 Si 0.96 44.56 29.54 68.60 2.03 46.59 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 12 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 13 C 0.08 2.81 4.86 86.30 0.42 3.23 16 14 N -0.67 -17.71 4.97 -495.45 -2.46 -20.17 16 15 C 0.13 3.13 2.24 44.17 0.10 3.23 16 16 H 0.05 1.19 7.77 -2.39 -0.02 1.17 16 17 C -0.11 -2.14 5.16 30.59 0.16 -1.98 16 18 C 0.07 1.31 6.77 71.98 0.49 1.79 16 19 O -0.59 -10.75 13.66 -148.98 -2.04 -12.78 16 20 C -0.09 -2.15 4.49 -19.87 -0.09 -2.24 16 21 C -0.13 -3.07 9.67 22.27 0.22 -2.85 16 22 C -0.13 -2.81 10.05 22.27 0.22 -2.59 16 23 C -0.13 -2.77 10.05 22.27 0.22 -2.55 16 24 C -0.14 -3.17 10.05 22.27 0.22 -2.95 16 25 C -0.10 -2.50 9.32 22.27 0.21 -2.29 16 26 H 0.04 1.51 6.95 -2.38 -0.02 1.49 16 27 H 0.07 2.26 7.75 -2.39 -0.02 2.24 16 28 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 29 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 30 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 31 H 0.26 15.14 8.31 -92.70 -0.77 14.37 16 32 H 0.05 1.95 7.79 -2.38 -0.02 1.93 16 33 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.35 8.23 6.68 -89.70 -0.60 7.63 16 35 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 36 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 37 H 0.05 0.92 6.65 -2.39 -0.02 0.90 16 38 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.40 3.62 9.12 -74.06 -0.68 2.95 16 40 H 0.13 2.56 8.04 -2.91 -0.02 2.54 16 41 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 42 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 43 H 0.13 2.56 8.06 -2.91 -0.02 2.53 16 44 H 0.13 3.25 7.72 -2.91 -0.02 3.23 16 Total: -1.00 -67.57 358.29 1.10 -66.47 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -0.30 Total: 20.27 kcal Atomic # 6 Polarization: -46.67 SS G_CDS: 3.59 Total: -43.08 kcal Atomic # 7 Polarization: -75.29 SS G_CDS: -2.18 Total: -77.46 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: -2.04 Total: -12.78 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -67.57 1.10 -66.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602550397.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.032 kcal (2) G-P(sol) polarization free energy of solvation -67.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds