Wall clock time and date at job start Mon Mar 30 2020 01:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47505 * 2 1 4 4 C 1.52997 * 109.47239 * 120.00382 * 2 1 3 5 5 C 1.50696 * 109.46954 * 294.99878 * 4 2 1 6 6 H 1.07995 * 120.00204 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99845 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00002 * 179.97438 * 7 5 4 9 9 Si 1.86806 * 120.00074 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46671 * 90.00549 * 9 7 5 11 11 H 1.48500 * 109.47374 * 210.00124 * 9 7 5 12 12 H 1.48491 * 109.46948 * 330.00603 * 9 7 5 13 13 C 1.53003 * 109.46997 * 240.00190 * 2 1 3 14 14 N 1.46901 * 109.46889 * 64.99966 * 13 2 1 15 15 C 1.46901 * 111.00062 * 179.97438 * 14 13 2 16 16 C 1.53003 * 109.47396 * 180.02562 * 15 14 13 17 17 H 1.08997 * 109.47252 * 305.00356 * 16 15 14 18 18 C 1.53005 * 109.47098 * 185.00234 * 16 15 14 19 19 O 1.42901 * 109.46715 * 65.00374 * 16 15 14 20 20 C 1.35899 * 116.99893 * 204.81528 * 19 16 15 21 21 C 1.38740 * 120.05344 * 354.62288 * 20 19 16 22 22 C 1.38146 * 119.94197 * 179.97438 * 21 20 19 23 23 C 1.38266 * 120.05460 * 0.02562 * 22 21 20 24 24 C 1.38261 * 120.11557 * 0.27091 * 23 22 21 25 25 C 1.38150 * 120.05110 * 359.44683 * 24 23 22 26 26 H 1.08997 * 109.47273 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46877 * 299.99699 * 1 2 3 28 28 H 1.08999 * 109.46782 * 59.99292 * 1 2 3 29 29 H 1.08998 * 109.46927 * 54.99949 * 4 2 1 30 30 H 1.09001 * 109.47039 * 174.99363 * 4 2 1 31 31 H 0.97006 * 120.00113 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.47137 * 305.00245 * 13 2 1 33 33 H 1.08995 * 109.47577 * 184.99771 * 13 2 1 34 34 H 1.00897 * 110.99915 * 56.04963 * 14 13 2 35 35 H 1.09006 * 109.46848 * 60.00482 * 15 14 13 36 36 H 1.09003 * 109.47461 * 300.00299 * 15 14 13 37 37 H 1.08995 * 109.46790 * 180.02562 * 18 16 15 38 38 H 1.09003 * 109.46862 * 299.99896 * 18 16 15 39 39 H 1.08993 * 109.47048 * 60.00057 * 18 16 15 40 40 H 1.07995 * 120.02564 * 0.02562 * 21 20 19 41 41 H 1.08002 * 119.96784 * 180.02562 * 22 21 20 42 42 H 1.07999 * 119.93931 * 179.97438 * 23 22 21 43 43 H 1.07998 * 119.97307 * 179.70920 * 24 23 22 44 44 H 1.08001 * 120.02805 * 180.27633 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0569 2.4765 6 1 1.0807 0.9744 2.3757 7 6 1.9933 -0.4019 3.7282 8 7 1.6459 0.2775 4.7993 9 14 2.9637 -1.9886 3.9026 10 1 4.4172 -1.6851 3.8779 11 1 2.6164 -2.6423 5.1899 12 1 2.6290 -2.8995 2.7787 13 6 2.0400 -0.7212 -1.2493 14 7 1.6513 0.0375 -2.4456 15 6 2.1256 -0.6263 -3.6672 16 6 1.7033 0.1918 -4.8892 17 1 0.6243 0.3449 -4.8687 18 6 2.0875 -0.5610 -6.1646 19 8 2.3647 1.4584 -4.8661 20 6 1.7624 2.4810 -5.5282 21 6 0.6195 2.2454 -6.2787 22 6 0.0089 3.2868 -6.9504 23 6 0.5360 4.5628 -6.8755 24 6 1.6783 4.7991 -6.1332 25 6 2.2894 3.7622 -5.4550 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 1.6054 -1.7198 1.2950 30 1 3.1263 -0.7996 1.2054 31 1 1.8932 -0.0455 5.6799 32 1 1.6053 -1.7198 -1.2953 33 1 3.1262 -0.7995 -1.2058 34 1 1.9881 0.9874 -2.3966 35 1 1.6919 -1.6244 -3.7302 36 1 3.2126 -0.7036 -3.6402 37 1 1.7870 0.0221 -7.0351 38 1 3.1665 -0.7140 -6.1851 39 1 1.5831 -1.5271 -6.1822 40 1 0.2073 1.2490 -6.3371 41 1 -0.8810 3.1039 -7.5344 42 1 0.0574 5.3755 -7.4017 43 1 2.0908 5.7958 -6.0802 44 1 3.1791 3.9480 -4.8717 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602551410.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:45 Heat of formation + Delta-G solvation = -31.878991 kcal Electronic energy + Delta-G solvation = -21017.658532 eV Core-core repulsion = 17934.490908 eV Total energy + Delta-G solvation = -3083.167624 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.44334 -38.02666 -36.74763 -34.35180 -32.49286 -31.53813 -30.88041 -29.79885 -27.61420 -26.32309 -24.20112 -23.39652 -22.56617 -21.83980 -20.88568 -19.06967 -18.56177 -16.76934 -16.38318 -15.97817 -15.71529 -15.36443 -14.69773 -14.54288 -14.35035 -13.83502 -13.69774 -13.66157 -13.17140 -13.03537 -12.58247 -12.48702 -12.30502 -12.09294 -11.77209 -11.69650 -11.66665 -11.30529 -11.05946 -10.92944 -10.84514 -10.63133 -10.34966 -9.89680 -9.63529 -9.39257 -9.18465 -9.03321 -8.49246 -8.35571 -8.21055 -5.99593 -3.96343 1.15267 1.28209 3.02750 3.32771 3.40186 3.43966 3.62116 4.18007 4.48852 4.56907 4.68536 4.72582 4.87154 4.94568 4.97587 5.18559 5.20507 5.31276 5.33915 5.39259 5.41280 5.59042 5.63619 5.67373 5.80061 5.81944 5.85363 6.05312 6.15667 6.22558 6.31086 6.34522 6.43866 6.60419 6.61531 6.86798 7.05934 7.15576 7.23780 7.30438 7.32418 7.50083 7.60154 7.85419 8.60319 9.06482 9.63322 11.13913 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.025289 B = 0.003078 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.935421 B = 9095.139205 C = 9684.171116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.074 4.074 3 H 0.059 0.941 4 C -0.009 4.009 5 C -0.512 4.512 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.878 3.122 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.061 3.939 14 N -0.687 5.687 15 C 0.064 3.936 16 C 0.083 3.917 17 H 0.084 0.916 18 C -0.179 4.179 19 O -0.310 6.310 20 C 0.139 3.861 21 C -0.210 4.210 22 C -0.082 4.082 23 C -0.164 4.164 24 C -0.081 4.081 25 C -0.155 4.155 26 H 0.038 0.962 27 H 0.059 0.941 28 H 0.043 0.957 29 H 0.016 0.984 30 H 0.008 0.992 31 H 0.262 0.738 32 H 0.066 0.934 33 H 0.025 0.975 34 H 0.345 0.655 35 H 0.089 0.911 36 H 0.038 0.962 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.129 0.871 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.127 0.873 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.437 2.664 -26.343 26.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.093 4.093 3 H 0.078 0.922 4 C -0.047 4.047 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.067 4.067 14 N -0.318 5.318 15 C -0.066 4.066 16 C 0.026 3.974 17 H 0.102 0.898 18 C -0.237 4.237 19 O -0.223 6.223 20 C 0.094 3.906 21 C -0.228 4.228 22 C -0.100 4.100 23 C -0.182 4.182 24 C -0.100 4.100 25 C -0.174 4.174 26 H 0.058 0.942 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.034 0.966 30 H 0.026 0.974 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.163 0.837 35 H 0.107 0.893 36 H 0.056 0.944 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.147 0.853 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.145 0.855 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.871 2.354 -26.063 26.183 hybrid contribution 1.330 -0.770 0.224 1.553 sum 0.458 1.584 -25.839 25.891 Atomic orbital electron populations 1.21593 0.95268 1.00577 1.00691 1.21005 0.96364 0.99067 0.92853 0.92208 1.19612 0.95358 0.96225 0.93495 1.21139 1.35259 1.09501 0.89097 0.90819 1.25033 0.95734 0.96898 0.95960 1.69918 1.47290 1.39297 0.97997 0.86802 0.80593 0.84560 0.77448 1.20448 1.21487 1.19081 1.22183 0.97185 0.97687 0.89666 1.60543 1.63764 1.06348 1.01186 1.22036 0.98484 0.97304 0.88790 1.22584 0.97853 0.81385 0.95533 0.89829 1.22348 1.03142 1.00967 0.97221 1.86107 1.48609 1.18053 1.69560 1.19018 0.91802 0.88163 0.91658 1.21327 0.98077 1.00661 1.02763 1.20947 0.98844 0.92521 0.97684 1.21041 0.97823 0.97063 1.02305 1.20968 0.95092 0.98427 0.95469 1.20496 1.02761 0.90150 1.03967 0.94238 0.92227 0.93755 0.96615 0.97398 0.92850 0.91536 0.95711 0.83666 0.89325 0.94424 0.91758 0.91452 0.90760 0.85315 0.86003 0.86125 0.85517 0.85260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 8.89 37.16 0.33 -2.09 16 2 C -0.07 -1.48 2.48 -90.62 -0.22 -1.71 16 3 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 4 C -0.01 -0.22 3.52 -27.89 -0.10 -0.32 16 5 C -0.51 -14.66 8.96 -34.44 -0.31 -14.97 16 6 H 0.07 2.27 7.30 -52.49 -0.38 1.88 16 7 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 8 N -0.91 -28.26 13.96 55.43 0.77 -27.49 16 9 Si 0.88 22.03 27.47 -169.99 -4.67 17.36 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 13 C 0.06 1.01 5.07 -3.82 -0.02 0.99 16 14 N -0.69 -9.82 5.96 -113.77 -0.68 -10.50 16 15 C 0.06 0.73 5.39 -3.82 -0.02 0.71 16 16 C 0.08 0.85 2.46 -26.73 -0.07 0.79 16 17 H 0.08 0.87 6.32 -51.93 -0.33 0.54 16 18 C -0.18 -1.45 9.17 37.16 0.34 -1.10 16 19 O -0.31 -3.74 9.32 -19.42 -0.18 -3.93 16 20 C 0.14 1.61 6.60 -39.22 -0.26 1.35 16 21 C -0.21 -2.13 8.24 -39.43 -0.32 -2.46 16 22 C -0.08 -0.74 10.04 -39.60 -0.40 -1.14 16 23 C -0.16 -1.44 10.04 -39.56 -0.40 -1.84 16 24 C -0.08 -0.75 10.04 -39.60 -0.40 -1.15 16 25 C -0.16 -1.68 9.99 -39.43 -0.39 -2.07 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 1.29 6.95 -51.93 -0.36 0.93 16 28 H 0.04 0.78 7.75 -51.93 -0.40 0.38 16 29 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 30 H 0.01 0.19 7.57 -51.93 -0.39 -0.21 16 31 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.35 5.11 8.29 -39.29 -0.33 4.78 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.50 6.90 -51.93 -0.36 0.14 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.13 1.14 5.43 -52.49 -0.28 0.86 16 41 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 43 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 44 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 353.20 15.07 5.32 5.32 Total: -1.00 -31.26 353.20 -9.22 -40.47 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -7.45 Total: 1.96 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: -2.33 Total: -23.20 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: 0.10 Total: -37.99 kcal Atomic # 8 Polarization: -3.74 SS G_CDS: -0.18 Total: -3.93 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.26 -9.22 -40.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602551410.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.596 kcal (2) G-P(sol) polarization free energy of solvation -31.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds