Wall clock time and date at job start Mon Mar 30 2020 01:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47505 * 2 1 4 4 C 1.52997 * 109.47239 * 120.00382 * 2 1 3 5 5 C 1.50696 * 109.46954 * 294.99878 * 4 2 1 6 6 H 1.07995 * 120.00204 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99845 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00002 * 179.97438 * 7 5 4 9 9 Si 1.86806 * 120.00074 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46671 * 90.00549 * 9 7 5 11 11 H 1.48500 * 109.47374 * 210.00124 * 9 7 5 12 12 H 1.48491 * 109.46948 * 330.00603 * 9 7 5 13 13 C 1.53003 * 109.46997 * 240.00190 * 2 1 3 14 14 N 1.46901 * 109.46889 * 64.99966 * 13 2 1 15 15 C 1.46901 * 111.00062 * 179.97438 * 14 13 2 16 16 C 1.53003 * 109.47396 * 180.02562 * 15 14 13 17 17 H 1.08997 * 109.47252 * 305.00356 * 16 15 14 18 18 C 1.53005 * 109.47098 * 185.00234 * 16 15 14 19 19 O 1.42901 * 109.46715 * 65.00374 * 16 15 14 20 20 C 1.35899 * 116.99893 * 204.81528 * 19 16 15 21 21 C 1.38740 * 120.05344 * 354.62288 * 20 19 16 22 22 C 1.38146 * 119.94197 * 179.97438 * 21 20 19 23 23 C 1.38266 * 120.05460 * 0.02562 * 22 21 20 24 24 C 1.38261 * 120.11557 * 0.27091 * 23 22 21 25 25 C 1.38150 * 120.05110 * 359.44683 * 24 23 22 26 26 H 1.08997 * 109.47273 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46877 * 299.99699 * 1 2 3 28 28 H 1.08999 * 109.46782 * 59.99292 * 1 2 3 29 29 H 1.08998 * 109.46927 * 54.99949 * 4 2 1 30 30 H 1.09001 * 109.47039 * 174.99363 * 4 2 1 31 31 H 0.97006 * 120.00113 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.47137 * 305.00245 * 13 2 1 33 33 H 1.08995 * 109.47577 * 184.99771 * 13 2 1 34 34 H 1.00897 * 110.99915 * 56.04963 * 14 13 2 35 35 H 1.09006 * 109.46848 * 60.00482 * 15 14 13 36 36 H 1.09003 * 109.47461 * 300.00299 * 15 14 13 37 37 H 1.08995 * 109.46790 * 180.02562 * 18 16 15 38 38 H 1.09003 * 109.46862 * 299.99896 * 18 16 15 39 39 H 1.08993 * 109.47048 * 60.00057 * 18 16 15 40 40 H 1.07995 * 120.02564 * 0.02562 * 21 20 19 41 41 H 1.08002 * 119.96784 * 180.02562 * 22 21 20 42 42 H 1.07999 * 119.93931 * 179.97438 * 23 22 21 43 43 H 1.07998 * 119.97307 * 179.70920 * 24 23 22 44 44 H 1.08001 * 120.02805 * 180.27633 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0569 2.4765 6 1 1.0807 0.9744 2.3757 7 6 1.9933 -0.4019 3.7282 8 7 1.6459 0.2775 4.7993 9 14 2.9637 -1.9886 3.9026 10 1 4.4172 -1.6851 3.8779 11 1 2.6164 -2.6423 5.1899 12 1 2.6290 -2.8995 2.7787 13 6 2.0400 -0.7212 -1.2493 14 7 1.6513 0.0375 -2.4456 15 6 2.1256 -0.6263 -3.6672 16 6 1.7033 0.1918 -4.8892 17 1 0.6243 0.3449 -4.8687 18 6 2.0875 -0.5610 -6.1646 19 8 2.3647 1.4584 -4.8661 20 6 1.7624 2.4810 -5.5282 21 6 0.6195 2.2454 -6.2787 22 6 0.0089 3.2868 -6.9504 23 6 0.5360 4.5628 -6.8755 24 6 1.6783 4.7991 -6.1332 25 6 2.2894 3.7622 -5.4550 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 1.6054 -1.7198 1.2950 30 1 3.1263 -0.7996 1.2054 31 1 1.8932 -0.0455 5.6799 32 1 1.6053 -1.7198 -1.2953 33 1 3.1262 -0.7995 -1.2058 34 1 1.9881 0.9874 -2.3966 35 1 1.6919 -1.6244 -3.7302 36 1 3.2126 -0.7036 -3.6402 37 1 1.7870 0.0221 -7.0351 38 1 3.1665 -0.7140 -6.1851 39 1 1.5831 -1.5271 -6.1822 40 1 0.2073 1.2490 -6.3371 41 1 -0.8810 3.1039 -7.5344 42 1 0.0574 5.3755 -7.4017 43 1 2.0908 5.7958 -6.0802 44 1 3.1791 3.9480 -4.8717 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602551410.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:45 Heat of formation + Delta-G solvation = -50.467312 kcal Electronic energy + Delta-G solvation = -21018.464582 eV Core-core repulsion = 17934.490908 eV Total energy + Delta-G solvation = -3083.973674 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.21477 -38.89516 -38.04098 -35.76034 -34.26118 -32.73075 -31.67471 -30.52451 -29.47745 -27.55107 -25.57971 -24.21278 -23.55496 -23.26171 -21.72281 -20.68516 -19.32463 -18.92765 -17.14596 -16.88759 -16.65913 -16.43411 -16.20794 -15.71673 -15.47291 -15.20587 -14.82672 -14.72860 -14.38117 -14.25288 -13.81014 -13.55580 -13.32897 -13.21780 -13.12425 -12.97374 -12.82139 -12.46886 -12.38971 -12.14726 -12.07150 -11.85681 -11.78216 -11.55744 -11.43876 -11.18241 -11.01264 -10.73836 -9.90598 -9.36706 -9.10062 -8.26321 -6.28932 0.43259 0.54444 1.35634 1.37513 1.49539 2.26423 2.37626 2.89460 3.08741 3.14328 3.79644 3.97172 4.00971 4.06571 4.14404 4.18769 4.26729 4.31526 4.46200 4.48067 4.54371 4.62023 4.66208 4.71476 4.84931 4.87717 4.90938 4.92858 4.96471 5.09476 5.12500 5.20360 5.37520 5.40062 5.42976 5.52559 5.54290 5.64146 5.69425 5.72235 5.92144 6.06150 6.34031 6.39736 6.53210 6.78731 7.34544 8.90633 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.025289 B = 0.003078 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.935421 B = 9095.139205 C = 9684.171116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.071 4.071 3 H 0.044 0.956 4 C -0.006 4.006 5 C -0.520 4.520 6 H 0.032 0.968 7 C 0.000 4.000 8 N -0.955 5.955 9 Si 0.950 3.050 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.245 1.245 13 C 0.075 3.925 14 N -0.690 5.690 15 C 0.064 3.936 16 C 0.084 3.916 17 H 0.082 0.918 18 C -0.172 4.172 19 O -0.328 6.328 20 C 0.117 3.883 21 C -0.218 4.218 22 C -0.087 4.087 23 C -0.168 4.168 24 C -0.086 4.086 25 C -0.177 4.177 26 H 0.047 0.953 27 H 0.025 0.975 28 H 0.062 0.938 29 H 0.021 0.979 30 H 0.014 0.986 31 H 0.265 0.735 32 H 0.077 0.923 33 H 0.026 0.974 34 H 0.340 0.660 35 H 0.105 0.895 36 H 0.036 0.964 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.092 0.908 40 H 0.139 0.861 41 H 0.146 0.854 42 H 0.145 0.855 43 H 0.147 0.853 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.267 1.130 -28.710 28.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.090 4.090 3 H 0.062 0.938 4 C -0.044 4.044 5 C -0.558 4.558 6 H 0.051 0.949 7 C -0.196 4.196 8 N -0.596 5.596 9 Si 0.773 3.227 10 H -0.194 1.194 11 H -0.211 1.211 12 H -0.168 1.168 13 C -0.054 4.054 14 N -0.320 5.320 15 C -0.065 4.065 16 C 0.028 3.972 17 H 0.100 0.900 18 C -0.230 4.230 19 O -0.243 6.243 20 C 0.072 3.928 21 C -0.236 4.236 22 C -0.105 4.105 23 C -0.186 4.186 24 C -0.104 4.104 25 C -0.196 4.196 26 H 0.066 0.934 27 H 0.045 0.955 28 H 0.081 0.919 29 H 0.039 0.961 30 H 0.032 0.968 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.045 0.955 34 H 0.158 0.842 35 H 0.123 0.877 36 H 0.054 0.946 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.111 0.889 40 H 0.157 0.843 41 H 0.163 0.837 42 H 0.163 0.837 43 H 0.165 0.835 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.706 0.821 -28.463 28.484 hybrid contribution 1.209 -0.154 0.932 1.534 sum 0.503 0.667 -27.532 27.544 Atomic orbital electron populations 1.21484 0.94961 1.00811 0.99924 1.20890 0.96575 0.98261 0.93281 0.93763 1.19561 0.95670 0.96003 0.93151 1.21456 1.34386 1.08611 0.91337 0.94931 1.26030 0.97064 1.01040 0.95472 1.70080 1.49153 1.41648 0.98734 0.85664 0.79060 0.79840 0.78104 1.19397 1.21126 1.16832 1.21921 0.97121 0.97639 0.88749 1.60509 1.63953 1.06096 1.01465 1.22143 0.98495 0.98032 0.87835 1.22618 0.97642 0.81006 0.95945 0.89980 1.22299 1.03129 1.01543 0.95991 1.86070 1.49308 1.18758 1.70122 1.19253 0.92723 0.88264 0.92585 1.21518 0.97776 1.01614 1.02722 1.21311 0.99439 0.92366 0.97396 1.21406 0.97495 0.97804 1.01849 1.21277 0.95231 0.98969 0.94954 1.20705 1.03284 0.90723 1.04890 0.93413 0.95540 0.91881 0.96062 0.96802 0.92662 0.90460 0.95539 0.84208 0.87659 0.94573 0.91521 0.91751 0.88890 0.84330 0.83658 0.83735 0.83517 0.85576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.44 8.89 71.98 0.64 -3.80 16 2 C -0.07 -2.82 2.48 -10.79 -0.03 -2.85 16 3 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 4 C -0.01 -0.28 3.52 29.85 0.10 -0.18 16 5 C -0.52 -30.48 8.96 25.60 0.23 -30.26 16 6 H 0.03 2.11 7.30 -2.91 -0.02 2.09 16 7 C 0.00 -0.01 5.47 84.65 0.46 0.46 16 8 N -0.95 -61.21 13.96 21.45 0.30 -60.91 16 9 Si 0.95 45.02 27.47 68.60 1.88 46.91 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 12 H -0.24 -10.69 6.54 99.48 0.65 -10.04 16 13 C 0.07 2.32 5.07 86.30 0.44 2.76 16 14 N -0.69 -18.64 5.96 -513.86 -3.06 -21.70 16 15 C 0.06 1.34 5.39 86.30 0.46 1.81 16 16 C 0.08 1.60 2.46 30.60 0.08 1.67 16 17 H 0.08 1.58 6.32 -2.39 -0.02 1.56 16 18 C -0.17 -2.42 9.17 71.98 0.66 -1.76 16 19 O -0.33 -7.80 9.32 -92.41 -0.86 -8.67 16 20 C 0.12 2.66 6.60 22.51 0.15 2.81 16 21 C -0.22 -4.16 8.24 22.37 0.18 -3.97 16 22 C -0.09 -1.41 10.04 22.25 0.22 -1.19 16 23 C -0.17 -2.62 10.04 22.28 0.22 -2.39 16 24 C -0.09 -1.50 10.04 22.25 0.22 -1.28 16 25 C -0.18 -3.84 9.99 22.37 0.22 -3.61 16 26 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.03 1.16 6.95 -2.38 -0.02 1.15 16 28 H 0.06 2.18 7.75 -2.39 -0.02 2.16 16 29 H 0.02 0.98 7.20 -2.39 -0.02 0.97 16 30 H 0.01 0.64 7.57 -2.39 -0.02 0.62 16 31 H 0.26 15.82 8.31 -92.70 -0.77 15.05 16 32 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.34 9.86 8.29 -89.70 -0.74 9.12 16 35 H 0.11 1.87 8.14 -2.38 -0.02 1.85 16 36 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.07 0.92 6.90 -2.39 -0.02 0.90 16 38 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.14 2.24 5.43 -2.91 -0.02 2.22 16 41 H 0.15 1.58 8.06 -2.91 -0.02 1.55 16 42 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 43 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 44 H 0.13 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -68.66 353.20 2.70 -65.97 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.16 Total: 20.18 kcal Atomic # 6 Polarization: -46.06 SS G_CDS: 4.28 Total: -41.79 kcal Atomic # 7 Polarization: -79.84 SS G_CDS: -2.76 Total: -82.61 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: -0.86 Total: -8.67 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.88 Total: 46.91 kcal Total: -68.66 2.70 -65.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602551410.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.498 kcal (2) G-P(sol) polarization free energy of solvation -68.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds